X-Git-Url: http://bilbo.iut-bm.univ-fcomte.fr/pub/gitweb/simgrid.git/blobdiff_plain/ce930ad96b622e2b3856b7d9c3d97e60ec2c93a1..dd6c6eb3be3c34316c99ab7fa520fe74c5f70ccb:/docs/source/Configuring_SimGrid.rst

diff --git a/docs/source/Configuring_SimGrid.rst b/docs/source/Configuring_SimGrid.rst
index c629d166ac..26a3fccbfd 100644
--- a/docs/source/Configuring_SimGrid.rst
+++ b/docs/source/Configuring_SimGrid.rst
@@ -5,7 +5,7 @@ Configuring SimGrid
 
 .. raw:: html
 
-   <object id="TOC" data="graphical-toc.svg" width="100%" type="image/svg+xml"></object>
+   <object id="TOC" data="graphical-toc.svg" type="image/svg+xml"></object>
    <script>
    window.onload=function() { // Wait for the SVG to be loaded before changing it
      var elem=document.querySelector("#TOC").contentDocument.getElementById("ConfigBox")
@@ -67,7 +67,7 @@ with :cpp:func:`simgrid::s4u::Engine::set_config` or :cpp:func:`MSG_config`.
    int main(int argc, char *argv[]) {
      simgrid::s4u::Engine e(&argc, argv);
 
-     e->set_config("Item:Value");
+     simgrid::s4u::Engine::set_config("Item:Value");
 
      // Rest of your code
    }
@@ -87,7 +87,6 @@ Existing Configuration Items
 - **contexts/factory:** :ref:`cfg=contexts/factory`
 - **contexts/guard-size:** :ref:`cfg=contexts/guard-size`
 - **contexts/nthreads:** :ref:`cfg=contexts/nthreads`
-- **contexts/parallel-threshold:** :ref:`cfg=contexts/parallel-threshold`
 - **contexts/stack-size:** :ref:`cfg=contexts/stack-size`
 - **contexts/synchro:** :ref:`cfg=contexts/synchro`
 
@@ -124,6 +123,8 @@ Existing Configuration Items
 - **network/bandwidth-factor:** :ref:`cfg=network/bandwidth-factor`
 - **network/crosstraffic:** :ref:`cfg=network/crosstraffic`
 - **network/latency-factor:** :ref:`cfg=network/latency-factor`
+- **network/loopback-lat:** :ref:`cfg=network/loopback`
+- **network/loopback-bw:** :ref:`cfg=network/loopback`
 - **network/maxmin-selective-update:** :ref:`Network Optimization Level <options_model_optim>`
 - **network/model:** :ref:`options_model_select`
 - **network/optim:** :ref:`Network Optimization Level <options_model_optim>`
@@ -131,6 +132,7 @@ Existing Configuration Items
 - **network/weight-S:** :ref:`cfg=network/weight-S`
 
 - **ns3/TcpModel:** :ref:`options_pls`
+- **ns3/seed:** :ref:`options_pls`
 - **path:** :ref:`cfg=path`
 - **plugin:** :ref:`cfg=plugin`
 
@@ -139,13 +141,17 @@ Existing Configuration Items
 - **surf/precision:** :ref:`cfg=surf/precision`
 
 - **For collective operations of SMPI,** please refer to Section :ref:`cfg=smpi/coll-selector`
+- **smpi/auto-shared-malloc-thresh:** :ref:`cfg=smpi/auto-shared-malloc-thresh`
 - **smpi/async-small-thresh:** :ref:`cfg=smpi/async-small-thresh`
 - **smpi/buffering:** :ref:`cfg=smpi/buffering`
 - **smpi/bw-factor:** :ref:`cfg=smpi/bw-factor`
 - **smpi/coll-selector:** :ref:`cfg=smpi/coll-selector`
 - **smpi/comp-adjustment-file:** :ref:`cfg=smpi/comp-adjustment-file`
 - **smpi/cpu-threshold:** :ref:`cfg=smpi/cpu-threshold`
+- **smpi/display-allocs:** :ref:`cfg=smpi/display-allocs`
 - **smpi/display-timing:** :ref:`cfg=smpi/display-timing`
+- **smpi/errors-are-fatal:** :ref:`cfg=smpi/errors-are-fatal`
+- **smpi/finalization-barrier:** :ref:`cfg=smpi/finalization-barrier`
 - **smpi/grow-injected-times:** :ref:`cfg=smpi/grow-injected-times`
 - **smpi/host-speed:** :ref:`cfg=smpi/host-speed`
 - **smpi/IB-penalty-factors:** :ref:`cfg=smpi/IB-penalty-factors`
@@ -158,6 +164,7 @@ Existing Configuration Items
 - **smpi/or:** :ref:`cfg=smpi/or`
 - **smpi/os:** :ref:`cfg=smpi/os`
 - **smpi/papi-events:** :ref:`cfg=smpi/papi-events`
+- **smpi/pedantic:** :ref:`cfg=smpi/pedantic`
 - **smpi/privatization:** :ref:`cfg=smpi/privatization`
 - **smpi/privatize-libs:** :ref:`cfg=smpi/privatize-libs`
 - **smpi/send-is-detached-thresh:** :ref:`cfg=smpi/send-is-detached-thresh`
@@ -166,6 +173,7 @@ Existing Configuration Items
 - **smpi/simulate-computation:** :ref:`cfg=smpi/simulate-computation`
 - **smpi/test:** :ref:`cfg=smpi/test`
 - **smpi/wtime:** :ref:`cfg=smpi/wtime`
+- **smpi/list-leaks** :ref:`cfg=smpi/list-leaks`
 
 - **Tracing configuration options** can be found in Section :ref:`tracing_tracing_options`
 
@@ -225,7 +233,7 @@ models for all existing resources.
 - ``cpu/model``: specify the used CPU model.  We have only one model
   for now:
 
-  - **Cas01:** Simplistic CPU model (time=size/power)
+  - **Cas01:** Simplistic CPU model (time=size/speed)
 
 - ``host/model``: The host concept is the aggregation of a CPU with a
   network card. Three models exists, but actually, only 2 of them are
@@ -342,7 +350,6 @@ and you should use the last one, which is the maximal size.
    cat /proc/sys/net/ipv4/tcp_rmem # gives the sender window
    cat /proc/sys/net/ipv4/tcp_wmem # gives the receiver window
 
-.. _cfg=smpi/IB-penalty-factors:
 .. _cfg=network/bandwidth-factor:
 .. _cfg=network/latency-factor:
 .. _cfg=network/weight-S:
@@ -358,21 +365,81 @@ one the timings of packet-level simulators, as described in `Accuracy
 Study and Improvement of Network Simulation in the SimGrid Framework
 <http://mescal.imag.fr/membres/arnaud.legrand/articles/simutools09.pdf>`_.
 
+- **network/latency-factor**: apply a multiplier to latency.
+  Models the TCP slow-start mechanism.
+- **network/bandwidth-factor**: actual bandwidth perceived by the
+  user.
+- **network/weight-S**: bottleneck sharing constant parameter. Used
+  to calculate RTT.
+
+These parameters are the same for all communications in your simulation,
+independently of message size or source/destination hosts. A more flexible
+mechanism based on callbacks was introduced in SimGrid. It provides the user
+a callback that will be called for each communication, allowing the user
+to set different latency and bandwidth factors, based on the message size, links used
+or zones traversed. To more details of how to use it, please look at the
+`examples/cpp/network-factors/s4u-network-factors.cpp <https://framagit.org/simgrid/simgrid/tree/master/examples/cpp/network-factors/s4u-network-factors.cpp>`_.
+
 
 If you are using the SMPI model, these correction coefficients are
 themselves corrected by constant values depending on the size of the
 exchange.  By default SMPI uses factors computed on the Stampede
 Supercomputer at TACC, with optimal deployment of processes on
 nodes. Again, only hardcore experts should bother about this fact.
+For more details, see SMPI sections about :ref:`cfg=smpi/bw-factor` and :ref:`cfg=smpi/lat-factor`.
+
+
+.. _cfg=smpi/IB-penalty-factors:
+
+Infiniband model
+^^^^^^^^^^^^^^^^
 
 InfiniBand network behavior can be modeled through 3 parameters
 ``smpi/IB-penalty-factors:"βe;βs;γs"``, as explained in `this PhD
 thesis
-<http://mescal.imag.fr/membres/jean-marc.vincent/index.html/PhD/Vienne.pdf>`_.
+<http://mescal.imag.fr/membres/jean-marc.vincent/index.html/PhD/Vienne.pdf>`_ (in French)
+or more concisely in `this paper <https://hal.inria.fr/hal-00953618/document>`_,
+even if that paper does only describe models for myrinet and ethernet.
+You can see in Fig 2 some results for Infiniband, for example. This model
+may be outdated by now for modern infiniband, anyway, so a new
+validation would be good. 
+
+The three paramaters are defined as follows:
+
+- βs: penalty factor for outgoing messages, computed by running a simple send to
+  two nodes and checking slowdown compared to a single send to one node,
+  dividing by 2
+- βe: penalty factor for ingoing messages, same computation method but with one
+  node receiving several messages
+- γr: slowdown factor when communication buffer memory is saturated. It needs a
+  more complicated pattern to run in order to be computed (5.3 in the thesis,
+  page 107), and formula in the end is γr = time(c)/(3×βe×time(ref)), where
+  time(ref) is the time of a single comm with no contention).
+
+Once these values are computed, a penalty is assessed for each message (this is
+the part implemented in the simulator) as shown page 106 of the thesis. Here is
+a simple translation of this text. First, some notations:
+
+- ∆e(e) which corresponds to the incoming degree of node e, that is to say the number of communications having as destination node e.
+- ∆s (s) which corresponds to the degree outgoing from node s, that is to say the number of communications sent by node s.
+- Φ (e) which corresponds to the number of communications destined for the node e but coming from a different node.
+- Ω (s, e) which corresponds to the number of messages coming from node s to node e. If node e only receives communications from different nodes then Φ (e) = ∆e (e). On the other hand if, for example, there are three messages coming from node s and going from node e then Φ (e) 6 = ∆e (e) and Ω (s, e) = 3
 
-.. todo:: This section should be rewritten, and actually explain the
-	  options network/bandwidth-factor, network/latency-factor,
-	  network/weight-S.
+To determine the penalty for a communication, two values need to be calculated. First, the penalty caused by the conflict in transmission, noted ps.
+
+
+- if ∆s (i) = 1 then ps = 1. 
+- if ∆s (i) ≥ 2 and ∆e (i) ≥ 3 then ps = ∆s (i) × βs × γr
+- else, ps = ∆s (i) × βs 
+
+
+Then,  the penalty caused by the conflict in reception (noted pe) should be computed as follows:
+
+- if ∆e (i) = 1 then pe = 1
+- else, pe = Φ (e) × βe × Ω (s, e) 
+
+Finally, the penalty associated with the communication is:
+p = max (ps ∈ s, pe)
 
 .. _cfg=network/crosstraffic:
 
@@ -395,6 +462,16 @@ can be set to 0 (disable this feature) or 1 (enable it).
 
 Note that with the default host model this option is activated by default.
 
+.. _cfg=network/loopback:
+
+Configuring loopback link
+^^^^^^^^^^^^^^^^^^^^^^^^^
+
+Several network model provide an implicit loopback link to account for local 
+communication on a host. By default it has a 10GBps bandwidth and a null latency.
+This can be changed with ``network/loopback-lat`` and ``network/loopback-bw`` 
+items.
+
 .. _cfg=smpi/async-small-thresh:
 
 Simulating Asynchronous Send
@@ -402,9 +479,9 @@ Simulating Asynchronous Send
 
 (this configuration item is experimental and may change or disappear)
 
-It is possible to specify that messages below a certain size will be
+It is possible to specify that messages below a certain size (in bytes) will be
 sent as soon as the call to MPI_Send is issued, without waiting for
-the correspondant receive. This threshold can be configured through
+the correspondent receive. This threshold can be configured through
 the ``smpi/async-small-thresh`` item. The default value is 0. This
 behavior can also be manually set for mailboxes, by setting the
 receiving mode of the mailbox with a call to
@@ -428,12 +505,21 @@ ns-3. The only valid values (enforced on the SimGrid side) are
 'default' (no change to the ns-3 configuration), 'NewReno' or 'Reno' or
 'Tahoe'.
 
+**Option** ``ns3/seed`` **Default:** "" (don't set the seed in ns-3)
+
+This option is the random seed to provide to ns-3 with
+``ns3::RngSeedManager::SetSeed`` and ``ns3::RngSeedManager::SetRun``.
+
+If left blank, no seed is set in ns-3. If the value 'time' is
+provided, the current amount of seconds since epoch is used as a seed.
+Otherwise, the provided value must be a number to use as a seed.
+
 Configuring the Storage model
 .............................
 
 .. _cfg=storage/max_file_descriptors:
 
-File Descriptor Cound per Host
+File Descriptor Count per Host
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 **Option** ``storage/max_file_descriptors`` **Default:** 1024
@@ -504,10 +590,10 @@ In SMPI, this depends on the message size, that is compared against two threshol
 - if (:ref:`smpi/send-is-detached-thresh <cfg=smpi/send-is-detached-thresh>` < size) then
   MPI_Send returns only when the message has actually been sent over the network. This is known as the rendez-vous mode.
 
-The ``smpi/buffering`` option gives an easier interface to choose between these semantics. It can take two values:
+The ``smpi/buffering`` (only valid with MC) option gives an easier interface to choose between these semantics. It can take two values:
 
-- **zero:** means that buffering should be disabled. Blocking communications are actually blocking.
-- **infty:** means that buffering should be made infinite. Blocking communications are non-blocking.
+- **zero:** means that buffering should be disabled. All communications are actually blocking.
+- **infty:** means that buffering should be made infinite. All communications are non-blocking.
 
 .. _cfg=model-check/property:
 
@@ -519,7 +605,7 @@ Specifying a liveness property
 If you want to specify liveness properties, you have to pass them on
 the command line, specifying the name of the file containing the
 property, as formatted by the `ltl2ba <https://github.com/utwente-fmt/ltl2ba>`_ program.
-Note that ltl2ba is not part of SimGrid and must be installed separatly.
+Note that ltl2ba is not part of SimGrid and must be installed separately.
 
 .. code-block:: shell
 
@@ -615,18 +701,18 @@ If set, the ``model-check/dot-output`` configuration item is the name
 of a file in which to write a dot file of the path leading to the
 property violation discovered (safety or liveness violation), as well
 as the cycle for liveness properties. This dot file can then be fed to the
-graphviz dot tool to generate an corresponding graphical representation.
+graphviz dot tool to generate a corresponding graphical representation.
 
 .. _cfg=model-check/max-depth:
 
 Exploration Depth Limit
 .......................
 
-The ``model-checker/max-depth`` can set the maximum depth of the
+The ``model-check/max-depth`` can set the maximum depth of the
 exploration graph of the model checker. If this limit is reached, a
 logging message is sent and the results might not be exact.
 
-By default, there is no depth limit.
+By default, the exploration is limited to the depth of 1000.
 
 .. _cfg=model-check/timeout:
 
@@ -708,10 +794,11 @@ MC-related options, keep non-MC-related ones and add
 Currently, if the path is of the form ``X;Y;Z``, each number denotes
 the actor's pid that is selected at each indecision point. If it's of
 the form ``X/a;Y/b``, the X and Y are the selected pids while the a
-and b are the return values of their simcalls. In the previouse
+and b are the return values of their simcalls. In the previous
 example, ``1/3;1/4``, you can see from the full output that the actor
 1 is doing MC_RANDOM simcalls, so the 3 and 4 simply denote the values
-that these simcall return.
+that these simcall return on the execution branch leading to the
+violation.
 
 Configuring the User Code Virtualization
 ----------------------------------------
@@ -782,10 +869,16 @@ stacks), leading to segfaults with corrupted stack traces.
 If you want to push the scalability limits of your code, you might
 want to reduce the ``contexts/stack-size`` item. Its default value is
 8192 (in KiB), while our Chord simulation works with stacks as small
-as 16 KiB, for example. This *setting is ignored* when using the
-thread factory. Instead, you should compile SimGrid and your
-application with ``-fsplit-stack``. Note that this compilation flag is
-not compatible with the model checker right now.
+as 16 KiB, for example. You can ensure that some actors have a specific
+size by simply changing the value of this configuration item before
+creating these actors. The :cpp:func:`simgrid::s4u::Engine::set_config` 
+functions are handy for that.
+
+This *setting is ignored* when using the thread factory (because there
+is no way to modify the stack size with C++ system threads). Instead,
+you should compile SimGrid and your application with
+``-fsplit-stack``. Note that this compilation flag is not compatible
+with the model checker right now.
 
 The operating system should only allocate memory for the pages of the
 stack which are actually used and you might not need to use this in
@@ -814,7 +907,6 @@ on other parts of the memory if their size is too small for the
 application.
 
 .. _cfg=contexts/nthreads:
-.. _cfg=contexts/parallel-threshold:
 .. _cfg=contexts/synchro:
 
 Running User Code in Parallel
@@ -832,17 +924,6 @@ run. To activate this, set the ``contexts/nthreads`` item to the amount
 of cores that you have in your computer (or lower than 1 to have the
 amount of cores auto-detected).
 
-Even if you asked several worker threads using the previous option,
-you can request to start the parallel execution (and pay the
-associated synchronization costs) only if the potential parallelism is
-large enough. For that, set the ``contexts/parallel-threshold``
-item to the minimal amount of user contexts needed to start the
-parallel execution. In any given simulation round, if that amount is
-not reached, the contexts will be run sequentially directly by the
-main thread (thus saving the synchronization costs). Note that this
-option is mainly useful when the grain of the user code is very fine,
-because our synchronization is now very efficient.
-
 When parallel execution is activated, you can choose the
 synchronization schema used with the ``contexts/synchro`` item,
 which value is either:
@@ -862,10 +943,10 @@ Configuring the Tracing
 -----------------------
 
 The :ref:`tracing subsystem <outcomes_vizu>` can be configured in
-several different ways depending on the nature of the simulator (MSG,
-SimDag, SMPI) and the kind of traces that need to be obtained. See the
+several different ways depending on the used interface (S4U, SMPI, SimDag)
+and the kind of traces that needs to be obtained. See the
 :ref:`Tracing Configuration Options subsection
-<tracing_tracing_options>` to get a detailed description of each
+<tracing_tracing_options>` for a full description of each
 configuration option.
 
 We detail here a simple way to get the traces working for you, even if
@@ -876,24 +957,21 @@ you never used the tracing API.
 
   .. code-block:: shell
 
-     --cfg=tracing:yes --cfg=tracing/uncategorized:yes --cfg=triva/uncategorized:uncat.plist
+     --cfg=tracing:yes --cfg=tracing/uncategorized:yes
 
-  The first parameter activates the tracing subsystem, the second
+  The first parameter activates the tracing subsystem, and the second
   tells it to trace host and link utilization (without any
-  categorization) and the third creates a graph configuration file to
-  configure Triva when analysing the resulting trace file.
+  categorization).
 
 - MSG or SimDag-based simulator and categorized traces (you need to
   declare categories and classify your tasks according to them) 
 
   .. code-block:: shell
 
-     --cfg=tracing:yes --cfg=tracing/categorized:yes --cfg=triva/categorized:cat.plist
+     --cfg=tracing:yes --cfg=tracing/categorized:yes
 
-  The first parameter activates the tracing subsystem, the second
-  tells it to trace host and link categorized utilization and the
-  third creates a graph configuration file to configure Triva when
-  analysing the resulting trace file.
+  The first parameter activates the tracing subsystem, and the second
+  tells it to trace host and link categorized utilization.
 
 - SMPI simulator and traces for a space/time view:
 
@@ -961,10 +1039,16 @@ a ``MPI_Send()``, SMPI will automatically benchmark the duration of
 this code, and create an execution task within the simulator to take
 this into account. For that, the actual duration is measured on the
 host machine and then scaled to the power of the corresponding
-simulated machine. The variable ``smpi/host-speed`` allows one to specify
-the computational speed of the host machine (in flop/s) to use when
-scaling the execution times. It defaults to 20000, but you really want
-to adjust it to get accurate simulation results.
+simulated machine. The variable ``smpi/host-speed`` allows one to
+specify the computational speed of the host machine (in flop/s by
+default) to use when scaling the execution times.
+
+The default value is ``smpi/host-speed=20kf`` (= 20,000 flop/s). This
+is probably underestimated for most machines, leading SimGrid to
+overestimate the amount of flops in the execution blocks that are
+automatically injected in the simulator. As a result, the execution
+time of the whole application will probably be overestimated until you
+use a realistic value.
 
 When the code consists of numerous consecutive MPI calls, the
 previous mechanism feeds the simulation kernel with numerous tiny
@@ -1050,7 +1134,7 @@ The possible throughput of network links is often dependent on the
 message sizes, as protocols may adapt to different message sizes. With
 this option, a series of message sizes and factors are given, helping
 the simulation to be more realistic. For instance, the current default
-value means that messages with size 65472 and more will get a total of
+value means that messages with size 65472 bytes and more will get a total of
 MAX_BANDWIDTH*0.940694, messages of size 15424 to 65471 will get
 MAX_BANDWIDTH*0.697866, and so on (where MAX_BANDWIDTH denotes the
 bandwidth of the link).
@@ -1073,6 +1157,23 @@ code, making it difficult to report the simulated time when the
 simulation ends. If you enable the ``smpi/display-timing`` item,
 ``smpirun`` will display this information when the simulation
 ends.
+SMPI will also display information about the amout of real time spent
+in application code and in SMPI internals, to provide hints about the
+need to use sampling to reduce simulation time.
+
+.. _cfg=smpi/display-allocs:
+
+Reporting memory allocations
+............................
+
+**Option** ``smpi/display-allocs`` **Default:** 0 (false)
+
+SMPI intercepts malloc and calloc calls performed inside the running
+application, if it wasn't compiled with SMPI_NO_OVERRIDE_MALLOC.
+With this option, SMPI will show at the end of execution the amount of
+memory allocated through these calls, and locate the most expensive one.
+This helps finding the targets for manual memory sharing, or the threshold
+to use for smpi/auto-shared-malloc-thresh option (see :ref:`cfg=smpi/auto-shared-malloc-thresh`).
 
 .. _cfg=smpi/keep-temps:
 
@@ -1222,6 +1323,42 @@ Each collective operation can be manually selected with a
 .. TODO:: All available collective algorithms will be made available
           via the ``smpirun --help-coll`` command.
 
+Add a barrier in MPI_Finalize
+.............................
+
+.. _cfg=smpi/finalization-barrier:
+
+**Option** ``smpi/finalization-barrier`` **default:** off
+
+By default, SMPI processes are destroyed as soon as soon as their code ends,
+so after a successful MPI_Finalize call returns. In some rare cases, some data
+might have been attached to MPI objects still active in the remaining processes,
+and can be destroyed eagerly by the finished process.
+If your code shows issues at finalization, such as segmentation fault, triggering
+this option will add an explicit MPI_Barrier(MPI_COMM_WORLD) call inside the
+MPI_Finalize, so that all processes will terminate at almost the same point.
+It might affect the total timing by the cost of a barrier.
+
+.. _cfg=smpi/errors-are-fatal:
+
+**Option** ``smpi/errors-are-fatal`` **default:** on
+
+By default, SMPI processes will crash if a MPI error code is returned. MPI allows
+to explicitely set MPI_ERRORS_RETURN errhandler to avoid this behaviour. This flag
+will turn on this behaviour by default (for all concerned types and errhandlers).
+This can ease debugging by going after the first reported error.
+
+.. _cfg=smpi/pedantic:
+
+**Option** ``smpi/pedantic`` **default:** on
+
+By default, SMPI will report all errors it finds in MPI codes. Some of these errors
+may not be considered as errors by all developers. This flag can be turned off to
+avoid reporting some usually harmless mistakes.
+Concerned errors list (will be expanded in the future):
+  - Calling MPI_Win_fence only once in a program, hence just opening an epoch without
+  ever closing it.
+
 .. _cfg=smpi/iprobe:
 
 Inject constant times for MPI_Iprobe
@@ -1289,7 +1426,7 @@ values, for example ``1:3:2;10:5:1``.  The sections are divided by ";"
 so this example contains two sections.  Furthermore, each section
 consists of three values.
 
-1. The first value denotes the minimum size for this section to take effect;
+1. The first value denotes the minimum size in bytes for this section to take effect;
    read it as "if message size is greater than this value (and other section has a larger
    first value that is also smaller than the message size), use this".
    In the first section above, this value is "1".
@@ -1382,7 +1519,7 @@ for each shared block.
 With the ``global`` algorithm, each call to SMPI_SHARED_MALLOC()
 returns a new address, but it only points to a shadow block: its memory
 area is mapped on a 1 MiB file on disk. If the returned block is of size
-N MiB, then the same file is mapped N times to cover the whole bloc.
+N MiB, then the same file is mapped N times to cover the whole block.
 At the end, no matter how many times you call SMPI_SHARED_MALLOC, this will
 only consume 1 MiB in memory.
 
@@ -1419,6 +1556,24 @@ Then, you can pass the option
 ``--cfg=smpi/shared-malloc-hugepage:/home/huge`` to smpirun to
 actually activate the huge page support in shared mallocs.
 
+.. _cfg=smpi/auto-shared-malloc-thresh:
+
+Automatically share allocations
+...............................
+
+**Option** ``smpi/auto-shared-malloc-thresh:`` **Default:** 0 (false)
+   This value in bytes represents the size above which all allocations
+   will be "shared" by default (as if they were performed through
+   SMPI_SHARED_MALLOC macros). Default = 0 = disabled feature.
+   The value must be carefully chosen to only select data buffers which
+   will not modify execution path or cause crash if their content is false.
+   Option :ref:`cfg=smpi/display-allocs` can be used to locate the largest
+   allocation detected in a run, and provide a good starting threshold.
+   Note : malloc, calloc and free are overridden by smpicc/cxx by default.
+   This can cause some troubles if codes are already overriding these. If this
+   is the case, defining SMPI_NO_OVERRIDE_MALLOC in the compilation flags can
+   help, but will make this feature unusable.
+
 .. _cfg=smpi/wtime:
 
 Inject constant times for MPI_Wtime, gettimeofday and clock_gettime
@@ -1450,6 +1605,16 @@ to be broken out of and reset each time your code asks for the current time.
 If the simulation speed really matters to you, you can avoid this
 extra delay by setting smpi/wtime to 0.
 
+.. _cfg=smpi/list-leaks:
+
+Report leaked MPI objects
+.........................
+
+**Option** ``smpi/list-leaks`` **default:** 0
+
+This option controls whether to report leaked MPI objects.
+The parameter is the number of leaks to report.
+
 Other Configurations
 --------------------
 
@@ -1522,10 +1687,122 @@ the tests: the full file path would makes the tests non-reproducible because
 the paths of source files depend of the build settings. That would
 break most of the tests since their output is continually compared.
 
-Logging Configuration
+.. _logging_config:
+
+Logging configuration
 ---------------------
 
-This can be done by using XBT. Go to :ref:`XBT_log` for more details.
+As introduced in :ref:`outcome_logs`, the SimGrid logging mechanism allows to configure at runtime the messages that should be displayed and those that should be omitted. Each
+message produced in the code is given a category (denoting its topic) and a priority. Then at runtime, each category is given a threshold (only messages of priority higher than
+that threshold are displayed), a layout (deciding how the messages in this category are formatted), and an appender (deciding what to do with the message: either print on stderr or
+to a file).
+
+This section explains how to configure this logging features. You can also refer to the documentation of the :ref:`programmer's interface <logging_prog>`, that allows to produce
+messages from your code.
+
+Most of the time, the logging mechanism is configured at runtime using the ``--log`` command-line argument, even if you can also use :c:func:`xbt_log_control_set()` to control it from
+your program. To pass configure more than one setting, you can either pass several ``--log`` arguments, or separate your settings with spaces, that must be quoted accordingly. In
+practice, the following is equivalent to the above settings: ``--log=root.thresh:error --log=s4u_host.thresh:debug``.
+
+If you want to specify more than one setting, you can either pass several ``--log`` argument to your program as above, or separate them with spaces. In this case, you want to quote
+your settings, as in ``--log="root.thresh:error s4u_host.thresh:debug"``. The parameters are interpreted in order, from left to right.
+
+
+Threshold configuration
+.......................
+
+The keyword ``threshold`` controls which logging event will get displayed in a given category. For example, ``--log=root.threshold:debug`` displays *every* message produced in the
+``root`` category and its subcategories (i.e., every message produced -- this is *extremely* verbose), while ``--log=root.thres:critical`` turns almost everything off. As you can
+see, ``threshold`` can be abbreviated here.
+
+Existing thresholds:
+
+ - ``trace`` some functions display a message at this level when entering or returning
+ - ``debug`` output that is mostly useful when debugging the corresponding module.
+ - ``verbose`` verbose output that is only mildly interesting and can easily be ignored
+ - ``info`` usual output (this is the default threshold of all categories)
+ - ``warning`` minor issue encountered
+ - ``error`` issue encountered
+ - ``critical`` major issue encountered, such as assertions failures
+
+.. _log/fmt:
+
+Format configuration
+....................
+
+The keyword ``fmt`` controls the layout (the format) of a logging category. For example, ``--log=root.fmt:%m`` reduces the output to the user-message only, removing any decoration such
+as the date, or the actor ID, everything. Existing format directives:
+
+ - %%: the % char
+ - %n: line separator (LOG4J compatible)
+ - %e: plain old space (SimGrid extension)
+
+ - %m: user-provided message
+
+ - %c: Category name (LOG4J compatible)
+ - %p: Priority name (LOG4J compatible)
+
+ - %h: Hostname (SimGrid extension)
+ - %a: Actor name (SimGrid extension -- note that with SMPI this is the integer value of the process rank)
+ - %i: Actor PID (SimGrid extension -- this is a 'i' as in 'i'dea)
+ - %t: Thread "name" (LOG4J compatible -- actually the address of the thread in memory)
+
+ - %F: file name where the log event was raised (LOG4J compatible)
+ - %l: location where the log event was raised (LOG4J compatible, like '%%F:%%L' -- this is a l as in 'l'etter)
+ - %L: line number where the log event was raised (LOG4J compatible)
+ - %M: function name (LOG4J compatible -- called method name here of course).
+
+ - %d: date (UNIX-like epoch)
+ - %r: application age (time elapsed since the beginning of the application)
+
+
+``--log=root.fmt:'[%h:%a:(%i) %r] %l: %m%n'`` gives you the default layout used for info messages while ``--log=root.fmt:'[%h:%a:(%i) %r] %l: [%c/%p] %m%n'`` gives you the default
+layout for the other priorities (it adds the source code location). Also, the actor identification is omitted by the default layout for the messages coming directly from the
+SimGrid kernel, so info messages are formatted with ``[%r] [%c/%p] %m%n`` in this case. When specifying the layout manually, such distinctions are currently impossible, and the
+provided layout is used for every messages.
+
+As with printf, you can specify the precision and width of the fields. For example, ``%.4r`` limits the date precision to four digits while ``%15h`` limits the host name to at most
+15 chars.
+
+
+If you want to have spaces in your log format, you should protect it. Otherwise, SimGrid will consider that this is a space-separated list of several parameters. But you should
+also protect it from the shell that also splits command line arguments on spaces. At the end, you should use something such as ``--log="'root.fmt:%l: [%p/%c]: %m%n'"``. 
+Another option is to use the ``%e`` directive for spaces, as in ``--log=root.fmt:%l:%e[%p/%c]:%e%m%n``. 
+
+Category appender
+.................
+
+The keyword ``app`` controls the appended of a logging category. For example ``--log=root.app:file:mylogfile`` redirects every output to the file ``mylogfile``.
+
+With the ``splitfile`` appender, a new file is created when the size of the output reaches the specified size. The format is ``--log=root.app:splitfile:<size>:<file name>``. For
+example, ``--log=root.app:splitfile:500:mylog_%`` creates log files of at most 500 bytes, using the names ``mylog_0``, ``mylog_1``, ``mylog_2``, etc.
+
+The ``rollfile`` appender uses one file only, but the file is emptied and recreated when its size reaches the specified maximum. For example, ``--log=root.app:rollfile:500:mylog``
+ensures that the log file ``mylog`` will never overpass 500 bytes in size.
+
+Any appender setup this way have its own layout format, that you may change afterward. When specifying a new appender, its additivity is set to false to prevent log event displayed
+by this appender to "leak" to any other appender higher in the hierarchy. You can naturally change that if you want your messages to be displayed twice.
+
+Category additivity
+...................
+
+The keyword ``add`` controls the additivity of a logging category. By default, the messages are only passed one appender only: the more specific, i.e. the first one found when
+climbing the tree from the category in which they were produced. In Log4J parlance, it is said that the default additivity of appenders is false. If you change this setting to
+``on`` (or ``yes`` or ``1``), the produced messages will also be passed to the upper appender.
+
+Let's consider a more complex example: ``--log="root.app:file:all.log s4u.app:file:iface.log xbt.app:file:xbt.log xbt.add:yes``. Here, the logging of s4u will be sent to the
+``iface.log`` file; the logging of the xbt toolbox will be sent to both the ``xbt.log`` file and the ``all.log`` file (because xbt additivity was enabled); and every other loggings
+will only be sent to ``all.log``.
+
+Other options
+.............
+
+``--help-logs`` displays a complete help message about logging in SimGrid.
+
+``--help-log-categories`` displays the actual hierarchy of log categories for this binary.
+
+``--log=no_loc`` hides the source locations (file names and line numbers) from the messages. This is useful to make tests reproducible.
+
 
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