Martin Quinson [Thu, 28 Nov 2019 16:29:08 +0000 (17:29 +0100)]
MC: also ignore a library that has multiple read-only segments on fedora
Arnaud Giersch [Thu, 28 Nov 2019 14:29:11 +0000 (15:29 +0100)]
Add norelro to link flags (see FG #35).
Arnaud Giersch [Wed, 27 Nov 2019 08:46:51 +0000 (09:46 +0100)]
Fix doubled semicolons.
Frederic Suter [Thu, 28 Nov 2019 12:38:46 +0000 (13:38 +0100)]
Merge branch 'master' of https://framagit.org/simgrid/simgrid
Frederic Suter [Thu, 28 Nov 2019 12:35:19 +0000 (13:35 +0100)]
e_smx_state_t is now kernel::activity::State
Augustin Degomme [Thu, 28 Nov 2019 09:32:19 +0000 (10:32 +0100)]
Add a test for mpi_cart_sub based on the bug report by Jonathan Borne.
Augustin Degomme [Thu, 28 Nov 2019 09:31:33 +0000 (10:31 +0100)]
replace ticks by version of python in project description when python is used for simgrid.
Augustin Degomme [Thu, 28 Nov 2019 09:28:39 +0000 (10:28 +0100)]
enhance shared tests to validate comms are skipped
Augustin Degomme [Thu, 28 Nov 2019 08:06:30 +0000 (09:06 +0100)]
Try to have a real mpi_cart_sub
Frederic Suter [Wed, 27 Nov 2019 12:55:37 +0000 (13:55 +0100)]
use by_name_or_null for links too
Frederic Suter [Wed, 27 Nov 2019 12:36:51 +0000 (13:36 +0100)]
fix asserts
Frederic Suter [Wed, 27 Nov 2019 12:16:59 +0000 (13:16 +0100)]
don't know why this was still a struct
Augustin Degomme [Tue, 26 Nov 2019 11:39:51 +0000 (12:39 +0100)]
Avoid copying data if it comes from/to a shared buffer, even internally.
Mainly useful for MPI_IN_PLACE collectives.
Augustin Degomme [Tue, 26 Nov 2019 00:31:37 +0000 (01:31 +0100)]
Ignore copies in plain shared_mallocs.
Arnaud Giersch [Sun, 24 Nov 2019 22:25:55 +0000 (23:25 +0100)]
Lame attempt to fix freebsd builds.
/usr/local/bin/ld: /usr/local/llvm-devel/lib/libomp.so: undefined reference to `kmp_set_thread_affinity_mask_initial'
Arnaud Giersch [Sun, 24 Nov 2019 21:23:30 +0000 (22:23 +0100)]
A single lookup is enough.
Arnaud Giersch [Fri, 22 Nov 2019 21:05:13 +0000 (22:05 +0100)]
Parentheses around macro parameters.
Arnaud Giersch [Fri, 22 Nov 2019 15:43:09 +0000 (16:43 +0100)]
Initialize allocated memory.
Arnaud Giersch [Fri, 22 Nov 2019 15:19:32 +0000 (16:19 +0100)]
Memory leak--
Arnaud Giersch [Thu, 21 Nov 2019 09:38:04 +0000 (10:38 +0100)]
Unused stuff.
Martin Quinson [Sat, 23 Nov 2019 17:15:08 +0000 (18:15 +0100)]
smpi colls: use C++ containers instead of nul-terminted C vectors
Martin Quinson [Sat, 23 Nov 2019 15:23:56 +0000 (16:23 +0100)]
cosmetics
Augustin Degomme [Fri, 22 Nov 2019 14:10:07 +0000 (15:10 +0100)]
don't forget that calloc assigns 0 to the buffer
Augustin Degomme [Fri, 22 Nov 2019 13:00:21 +0000 (14:00 +0100)]
cosmetics : I activated -pedantic for a quick pass
I decided to ignore errors related to printf %p which wants a void*-casted pointer
main changes are the removal of spurious ; in the code, and some forbidden dynamically sized arrays.
Augustin Degomme [Fri, 22 Nov 2019 11:07:18 +0000 (12:07 +0100)]
fix use after delete.
Augustin Degomme [Fri, 22 Nov 2019 11:07:05 +0000 (12:07 +0100)]
add calloc_intercept to avoid mistmatches.
Martin Quinson [Fri, 22 Nov 2019 06:35:12 +0000 (07:35 +0100)]
Merge remote-tracking branch 'framagit/master'
Martin Quinson [Fri, 22 Nov 2019 06:01:19 +0000 (07:01 +0100)]
expend more macros in MPI collectives
Augustin Degomme [Thu, 21 Nov 2019 18:09:54 +0000 (19:09 +0100)]
use catch2 way of doing this
Augustin Degomme [Thu, 21 Nov 2019 16:16:00 +0000 (17:16 +0100)]
Add tolerance for floating point precision comparisons.
Fails on 32bits if equality is used.
Augustin Degomme [Thu, 21 Nov 2019 14:55:29 +0000 (15:55 +0100)]
A change in cmake 3.16 makes this syntax necessary.
Let's see if old cmakes (and osx) allow this.
ref https://gitlab.kitware.com/cmake/cmake/issues/19747
Augustin Degomme [Thu, 21 Nov 2019 13:34:45 +0000 (14:34 +0100)]
Actually free the memory in these cases, should fix leaks and crashes on 32 bits.
Augustin Degomme [Thu, 21 Nov 2019 13:33:57 +0000 (14:33 +0100)]
include smpi helpers definitions in smpi.h, to define smpi_shared_free again.
Arnaud Giersch [Wed, 20 Nov 2019 21:51:59 +0000 (22:51 +0100)]
Kill now unused macros.
Arnaud Giersch [Wed, 20 Nov 2019 14:23:34 +0000 (15:23 +0100)]
Define simgrid::xbt::InitializationError (please Sonar).
Arnaud Giersch [Wed, 20 Nov 2019 13:49:26 +0000 (14:49 +0100)]
Cleanup around simgrid::ParseError.
Arnaud Giersch [Mon, 11 Nov 2019 13:47:24 +0000 (14:47 +0100)]
Update .mailmap.
Martin Quinson [Wed, 20 Nov 2019 13:09:40 +0000 (14:09 +0100)]
rnd: cosmetics to ease the implem
Martin Quinson [Wed, 20 Nov 2019 12:18:21 +0000 (13:18 +0100)]
Merge branch 'xbt_random' into 'master'
Choice between ad-hoc and standard distributions implementations
See merge request simgrid/simgrid!21
Yann Duplouy [Wed, 20 Nov 2019 10:37:44 +0000 (11:37 +0100)]
Reverting the change to xbt_uniform_int
Yann Duplouy [Wed, 20 Nov 2019 10:29:59 +0000 (11:29 +0100)]
Adding unit tests for the standard library distributions
Yann Duplouy [Wed, 20 Nov 2019 10:25:35 +0000 (11:25 +0100)]
Updating tests results for dht-chord (due to change to uniform int)
Yann Duplouy [Wed, 20 Nov 2019 10:25:16 +0000 (11:25 +0100)]
Modifying how uniform integer are generated
Yann Duplouy [Wed, 20 Nov 2019 09:52:42 +0000 (10:52 +0100)]
Introducing choice between the standard library and ad-hoc SimGrid distribution implementations.
Augustin Degomme [Tue, 19 Nov 2019 12:56:26 +0000 (13:56 +0100)]
add option "smpi/auto-shared-malloc-thresh"
This applies smpi_shared_malloc automatically to all allocations above a certain size.
Test based on the sample-shared one: malloc >= 8bytes is indeed shared, without using macros.
todo: calloc and co.
Martin Quinson [Tue, 19 Nov 2019 00:33:19 +0000 (01:33 +0100)]
plug a memleak on parse error :)
The most important fix ever!
Martin Quinson [Tue, 19 Nov 2019 00:27:14 +0000 (01:27 +0100)]
document recent changes
Martin Quinson [Tue, 19 Nov 2019 00:15:21 +0000 (01:15 +0100)]
Inventive hack to get flex raising exceptions on parse error
The core of this (over 2500 lines) patch reads as follows:
- fprintf(stderr, "%s\n", flexml_err_msg);
+ surf_parse_error(flexml_err_msg);
But the code we want to change is generated by Flex, so ... I have to
augment the perl script that rewrite some parts of the Flex result for
that purpose. Because yes, we do have such a perl script.
At the end, we need to regenerate the flex parser with the latest
version of Flex to apply this patch, resulting in that jumbo patch.
Martin Quinson [Mon, 18 Nov 2019 23:41:09 +0000 (00:41 +0100)]
also throw an exception when asked to parse an inexisting file
Martin Quinson [Mon, 18 Nov 2019 23:32:21 +0000 (00:32 +0100)]
smpi: expend a bunch of macros so that the functions' prototypes become accessible to my IDE
Martin Quinson [Mon, 18 Nov 2019 14:57:30 +0000 (15:57 +0100)]
Change smpi::Colls static class into a namespace of functions
Martin Quinson [Tue, 19 Nov 2019 00:13:06 +0000 (01:13 +0100)]
Merge branch 'xbt_random' into 'master'
A module for RNG calls
See merge request simgrid/simgrid!20
Frederic Suter [Mon, 18 Nov 2019 18:45:36 +0000 (19:45 +0100)]
Merge branch 'master' of https://framagit.org/simgrid/simgrid
Frederic Suter [Mon, 18 Nov 2019 16:35:39 +0000 (17:35 +0100)]
power is speed
Yann Duplouy [Mon, 18 Nov 2019 12:58:45 +0000 (13:58 +0100)]
Assertion to force maximum value to be greater or equal to minimum in uniform int
Augustin Degomme [Mon, 18 Nov 2019 10:39:57 +0000 (11:39 +0100)]
fix fortran + ARM 64 bits.
I would like to get rid of these lists of architectures, and rely on cmake sizeof_voidp ... but this would mean relying on internal_config from smpi.h, and this is bad practice in simgrid :p Any idea ? Feel free to change it.
Anyway I changed the one in a cpp file that handles 99% of the cases, le .h is there for some ugly corner cases... This should not trigger too many errors in case of a new 64bits architecture popping.
Martin Quinson [Mon, 18 Nov 2019 05:55:28 +0000 (06:55 +0100)]
Energy plugins now throws std::logic_error when not properly inited before use
Martin Quinson [Mon, 18 Nov 2019 05:25:09 +0000 (06:25 +0100)]
parsing: less asserts, more exception raising
Martin Quinson [Mon, 18 Nov 2019 05:13:09 +0000 (06:13 +0100)]
handle flexer errors within the parsing module
Raise the exception ourselves instead of leaking an error code that
must be converted into an exception by our caller.
Martin Quinson [Mon, 18 Nov 2019 05:05:08 +0000 (06:05 +0100)]
Parse errors now raise a simgrid::ParseError that you may want to catch
Frederic Suter [Sun, 17 Nov 2019 23:49:28 +0000 (00:49 +0100)]
a bit of cleanup, could go further but not now
Martin Quinson [Sun, 17 Nov 2019 23:03:36 +0000 (00:03 +0100)]
reduce code dupplication
Martin Quinson [Sat, 16 Nov 2019 01:57:58 +0000 (02:57 +0100)]
smpi: many classes died tonight, but that will save kitten on the long term.
smpi::Coll was a class with 11 static methods (one per MPI function
that has several implementations: allgather, allgatherv, etc) and
nothing else.
That class was derivated for each implementation of a given MPI
function, and the resulting class was overloading only one of the
methods while the others were ignored. There was well over 100 such
child classes.
The overloaded methods were static in their class, and always used as
a function (the class was never instanciated).
All this was written with some macros to reduce the burden.
Instead, we now use regular functions in the smpi namespace.
Martin Quinson [Thu, 14 Nov 2019 17:15:48 +0000 (18:15 +0100)]
fix ns3 builds
Martin Quinson [Thu, 14 Nov 2019 09:39:20 +0000 (10:39 +0100)]
deprecate MSG_set_function, that seems useless since we cannot bypass the parser nowadays
Frederic Suter [Thu, 14 Nov 2019 10:00:12 +0000 (11:00 +0100)]
store kernel-level objects in EngineImpl
Frederic Suter [Wed, 13 Nov 2019 12:22:12 +0000 (13:22 +0100)]
make piface_ private and have get_iface() everywhere
Frederic Suter [Tue, 12 Nov 2019 14:54:48 +0000 (15:54 +0100)]
don't use a deleted container by the newly created one
Martin Quinson [Tue, 12 Nov 2019 14:46:29 +0000 (15:46 +0100)]
fix make distcheck and useless cosmetics
This should have been 2 commits, but I don't want to artificially
increase the commit amount even further.
Martin Quinson [Tue, 12 Nov 2019 14:39:24 +0000 (15:39 +0100)]
Revert "Add the files generated by javasphinx in the git"
This reverts commit
1ae0a4689470568e864ef356ead1c9a0b67df03c.
Martin Quinson [Tue, 12 Nov 2019 14:27:47 +0000 (15:27 +0100)]
teshsuite: drop a test that is superseeded by a public example
Martin Quinson [Tue, 12 Nov 2019 13:11:59 +0000 (14:11 +0100)]
fix clang builds
Yann Duplouy [Tue, 12 Nov 2019 11:48:33 +0000 (12:48 +0100)]
Adding the unit-test for xbt/random to the Manifest
Frederic Suter [Tue, 12 Nov 2019 11:46:58 +0000 (12:46 +0100)]
factoring
Frederic Suter [Tue, 12 Nov 2019 11:46:32 +0000 (12:46 +0100)]
migrate to set_host in java too
Martin Quinson [Tue, 12 Nov 2019 11:25:51 +0000 (12:25 +0100)]
further doc improvements
Martin Quinson [Tue, 12 Nov 2019 11:05:01 +0000 (12:05 +0100)]
s4u::Actor: Rename migrate() into set_host()
Martin Quinson [Tue, 12 Nov 2019 11:04:21 +0000 (12:04 +0100)]
tiny doc improvments
Martin Quinson [Tue, 12 Nov 2019 10:48:38 +0000 (11:48 +0100)]
s4u::Actor: Merge signals on_migration_start/end into on_host_change
Yann Duplouy [Tue, 12 Nov 2019 10:30:36 +0000 (11:30 +0100)]
Adding xbt::random unit test to the list of unit tests
Yann Duplouy [Tue, 12 Nov 2019 10:30:24 +0000 (11:30 +0100)]
Unit tests for xbt::random
Yann Duplouy [Tue, 12 Nov 2019 10:29:59 +0000 (11:29 +0100)]
Fixes to xbt::random
Frederic Suter [Mon, 11 Nov 2019 09:59:47 +0000 (10:59 +0100)]
deprecate a couple of SIMIX functions
Martin Quinson [Mon, 11 Nov 2019 00:17:00 +0000 (01:17 +0100)]
further API doc improvement
Martin Quinson [Mon, 11 Nov 2019 00:13:59 +0000 (01:13 +0100)]
Add the files generated by javasphinx in the git
That way, we don't need that deprecated piece of code. Plus, the java
code is near to dead so it should not evolve in the future.
If I am to add new java bindings (for s4u), I'll write the doc weaved
into the current doc that already contains the C++/Python/C doc. So I
won't use javasphinx for that either.
As a bonus, I may be able to generate the doc in the Debian package.
Martin Quinson [Mon, 11 Nov 2019 00:12:29 +0000 (01:12 +0100)]
docker/build-deps: install sphinx elements from the packages, not with pip3
Martin Quinson [Mon, 11 Nov 2019 00:11:33 +0000 (01:11 +0100)]
autodoxy: show the class name when displaying method or fields
Martin Quinson [Sun, 10 Nov 2019 21:09:16 +0000 (22:09 +0100)]
Meld autodoxy into a single file for sake of import simplicity
Martin Quinson [Sun, 10 Nov 2019 20:55:16 +0000 (21:55 +0100)]
gitlab-ci: define PYTHONPATH explicitly to see if it helps
Martin Quinson [Sun, 10 Nov 2019 20:48:28 +0000 (21:48 +0100)]
Try to debug the autodoxy pb on framagit builders
- increase sphinx verbosity on gitlab
- build pages asap (not after regular builds)
- simplify the imports that are not found (top of file, not within a function)
Martin Quinson [Sun, 10 Nov 2019 20:46:06 +0000 (21:46 +0100)]
Fix autodoxy warnings
Martin Quinson [Sun, 10 Nov 2019 19:13:34 +0000 (20:13 +0100)]
gitlab-ci: show sphinx output on error
Martin Quinson [Sun, 10 Nov 2019 18:41:36 +0000 (19:41 +0100)]
doc: let's import existing stuff
I'm wondering why it's working on my machine with the borken name...
Martin Quinson [Sun, 10 Nov 2019 18:15:23 +0000 (19:15 +0100)]
python cosmetics: not X in Y => X not in Y
Martin Quinson [Sun, 10 Nov 2019 18:09:00 +0000 (19:09 +0100)]
doc: use sections instead of rubric
Martin Quinson [Sun, 10 Nov 2019 18:00:24 +0000 (19:00 +0100)]
Document the Actor with the new autodoxy extension of mine
Martin Quinson [Sun, 10 Nov 2019 17:57:54 +0000 (18:57 +0100)]
autodoxy: bug fix (copy/paste failure)
Martin Quinson [Sun, 10 Nov 2019 17:20:38 +0000 (18:20 +0100)]
autodoxy: if the meth signature does not match but only one meth is found, use it
This tries to be more permissive to user errors. A warning is spit.
Martin Quinson [Sun, 10 Nov 2019 16:59:08 +0000 (17:59 +0100)]
doc: add a autodoxyvar directive
There is too much shared content between this directive and the
autodoxymethod, but I'm getting tired of that game.
Martin Quinson [Sun, 10 Nov 2019 16:58:31 +0000 (17:58 +0100)]
doc: try to add a :show: attribute to the showfile directive