-\author{\IEEEauthorblockN{Rapha\"el Couturier\IEEEauthorrefmark{1}, Lilia Ziane Khodja\IEEEauthorrefmark{2}, and Christophe Guyeux\IEEEauthorrefmark{1}}
+\author{\IEEEauthorblockN{Rapha\"el Couturier\IEEEauthorrefmark{1}, Lilia Ziane Khodja \IEEEauthorrefmark{2}, and Christophe Guyeux\IEEEauthorrefmark{1}}
\IEEEauthorblockA{\IEEEauthorrefmark{1} Femto-ST Institute, University of Franche Comte, France\\
Email: \{raphael.couturier,christophe.guyeux\}@univ-fcomte.fr}
\IEEEauthorblockA{\IEEEauthorrefmark{2} INRIA Bordeaux Sud-Ouest, France\\
\IEEEauthorblockA{\IEEEauthorrefmark{1} Femto-ST Institute, University of Franche Comte, France\\
Email: \{raphael.couturier,christophe.guyeux\}@univ-fcomte.fr}
\IEEEauthorblockA{\IEEEauthorrefmark{2} INRIA Bordeaux Sud-Ouest, France\\
equals to the restart number of the GMRES-like method. Moreover, a tolerance
threshold must be specified for the solver. In practice, this threshold must be
much smaller than the convergence threshold of the TSIRM algorithm (\emph{i.e.}
equals to the restart number of the GMRES-like method. Moreover, a tolerance
threshold must be specified for the solver. In practice, this threshold must be
much smaller than the convergence threshold of the TSIRM algorithm (\emph{i.e.}
-$\epsilon_{tsirm}$). Line~\ref{algo:store}, $S_{k~ mod~ s}=x^k$ consists in copying the
-solution $x_k$ into the column $k~ mod~ s$ of the matrix $S$. After the
+$\epsilon_{tsirm}$). Line~\ref{algo:store}, $S_{k \mod s}=x^k$ consists in copying the
+solution $x_k$ into the column $k \mod s$ of the matrix $S$, where $S$ is a matrix of size $n\times s$ whose column vector $i$ is denoted by $S_i$. After the
minimization, the matrix $S$ is reused with the new values of the residuals. To
solve the minimization problem, an iterative method is used. Two parameters are
required for that: the maximum number of iterations and the threshold to stop the
minimization, the matrix $S$ is reused with the new values of the residuals. To
solve the minimization problem, an iterative method is used. Two parameters are
required for that: the maximum number of iterations and the threshold to stop the
parts. More precisely, except the least-squares step, all the other parts are
obvious to achieve out in parallel. In order to develop a parallel version of
our code, we have chosen to use PETSc~\cite{petsc-web-page}. For
line~\ref{algo:matrix_mul} the matrix-matrix multiplication is implemented and
efficient since the matrix $A$ is sparse and since the matrix $S$ contains few
parts. More precisely, except the least-squares step, all the other parts are
obvious to achieve out in parallel. In order to develop a parallel version of
our code, we have chosen to use PETSc~\cite{petsc-web-page}. For
line~\ref{algo:matrix_mul} the matrix-matrix multiplication is implemented and
efficient since the matrix $A$ is sparse and since the matrix $S$ contains few
interesting to solve the least-squares minimization, CGLS and LSQR.
In the following we remind the CGLS algorithm. The LSQR method follows more or
interesting to solve the least-squares minimization, CGLS and LSQR.
In the following we remind the CGLS algorithm. The LSQR method follows more or
+$\begin{array}{ll}
+& = \min_{x \in Vect\left(x_0, x_1, \hdots, x_{k-1} \right)} ||b-AS\alpha ||_2\\
+& \leqslant \min_{x \in Vect\left( S_{k-1} \right)} ||b-Ax ||_2\\
+& \leqslant ||b-Ax_{k-1}||
+\end{array}$
%%%*********************************************************
%%%*********************************************************
\section{Experiments using PETSc}
%%%*********************************************************
%%%*********************************************************
\section{Experiments using PETSc}
example ex15 of PETSc on the Juqueen architecture. Different numbers of cores
are studied ranging from 2,048 up-to 16,383. Two preconditioners have been
tested: {\it mg} and {\it sor}. For those experiments, the number of components (or unknowns of the
example ex15 of PETSc on the Juqueen architecture. Different numbers of cores
are studied ranging from 2,048 up-to 16,383. Two preconditioners have been
tested: {\it mg} and {\it sor}. For those experiments, the number of components (or unknowns of the
number can seem relatively small. In fact, for some applications that need a lot
of memory, the number of components per processor requires sometimes to be
small.
number can seem relatively small. In fact, for some applications that need a lot
of memory, the number of components per processor requires sometimes to be
small.
-Table~\ref{tab:01} is displayed. It can be noticed that the number of
-iterations per second of FMGRES is constant whereas it decrease with TSIRM with
-both preconditioner. This can be explained by the fact that when the number of
-core increases the time for the minimization step also increases but, generally,
+Table~\ref{tab:03} is displayed. It can be noticed that the number of
+iterations per second of FMGRES is constant whereas it decreases with TSIRM with
+both preconditioners. This can be explained by the fact that when the number of
+cores increases the time for the least-squares minimization step also increases but, generally,
when the number of cores increases, the number of iterations to reach the
threshold also increases, and, in that case, TSIRM is more efficient to reduce
the number of iterations. So, the overall benefit of using TSIRM is interesting.
when the number of cores increases, the number of iterations to reach the
threshold also increases, and, in that case, TSIRM is more efficient to reduce
the number of iterations. So, the overall benefit of using TSIRM is interesting.
\cline{3-8}
& & Time & \# Iter. & Time & \# Iter. & Time & \# Iter. & \\\hline \hline
2,048 & 8e-5 & 108.88 & 16,560 & 23.06 & 3,630 & 22.79 & 3,630 & 4.77 \\
\cline{3-8}
& & Time & \# Iter. & Time & \# Iter. & Time & \# Iter. & \\\hline \hline
2,048 & 8e-5 & 108.88 & 16,560 & 23.06 & 3,630 & 22.79 & 3,630 & 4.77 \\
-\caption{Comparison of FGMRES and 2 stage FGMRES algorithms for ex54 of Petsc (both with the MG preconditioner) with 25000 components per core on Curie (restart=30, s=12), time is expressed in seconds.}
+\caption{Comparison of FGMRES and TSIRM with FGMRES algorithms for ex54 of Petsc (both with the MG preconditioner) with 25,000 components per core on Curie (restart=30, s=12), time is expressed in seconds.}
512 & 3,969.69 & 33,120 & 709.57 & 5,790 & 622.76 & 5,070 & 6.37 & 1 & 1 & 1 \\
1024 & 1,530.06 & 25,860 & 290.95 & 4,830 & 307.71 & 5,070 & 5.25 & 1.30 & 1.21 & 1.01 \\
2048 & 919.62 & 31,470 & 237.52 & 8,040 & 194.22 & 6,510 & 4.73 & 1.08 & .75 & .80\\
512 & 3,969.69 & 33,120 & 709.57 & 5,790 & 622.76 & 5,070 & 6.37 & 1 & 1 & 1 \\
1024 & 1,530.06 & 25,860 & 290.95 & 4,830 & 307.71 & 5,070 & 5.25 & 1.30 & 1.21 & 1.01 \\
2048 & 919.62 & 31,470 & 237.52 & 8,040 & 194.22 & 6,510 & 4.73 & 1.08 & .75 & .80\\
-\caption{Comparison of FGMRES and 2 stage FGMRES algorithms for ex54 of Petsc (both with the MG preconditioner) with 204,919,225 components on Curie with different number of cores (restart=30, s=12, threshol 5e-5), time is expressed in seconds.}
+\caption{Comparison of FGMRES and TSIRM with FGMRES for ex54 of Petsc (both with the MG preconditioner) with 204,919,225 components on Curie with different number of cores (restart=30, s=12, threshold 5e-5), time is expressed in seconds.}
- adaptative number of outer iterations to minimize\\
- other methods to minimize the residuals?\\
- implement our solver inside PETSc
- adaptative number of outer iterations to minimize\\
- other methods to minimize the residuals?\\
- implement our solver inside PETSc
%%%*********************************************************
\section*{Acknowledgment}
This paper is partially funded by the Labex ACTION program (contract
%%%*********************************************************
\section*{Acknowledgment}
This paper is partially funded by the Labex ACTION program (contract
