X-Git-Url: https://bilbo.iut-bm.univ-fcomte.fr/and/gitweb/GMRES2stage.git/blobdiff_plain/649421a46874291325940af659c9eb66d83411b4..b751185010fba3e771ea8f9a6ef579aba3848e1f:/paper.tex diff --git a/paper.tex b/paper.tex index f4dba97..b96fa3a 100644 --- a/paper.tex +++ b/paper.tex @@ -601,7 +601,14 @@ is summarized while intended perspectives are provided. %%%********************************************************* \section{Related works} \label{sec:02} -%Wherever Times is specified, Times Roman or Times New Roman may be used. If neither is available on your system, please use the font closest in appearance to Times. Avoid using bit-mapped fonts if possible. True-Type 1 or Open Type fonts are preferred. Please embed symbol fonts, as well, for math, etc. +Krylov subspace iteration methods have increasingly become useful and successful techniques for solving linear and nonlinear systems and eigenvalue problems, especially since the increase development of the preconditioners~\cite{Saad2003,Meijerink77}. One reason of the popularity of these methods is their generality, simplicity and efficiency to solve systems of equations arising from very large and complex problems. %A Krylov method is based on a projection process onto a Krylov subspace spanned by vectors and it forms a sequence of approximations by minimizing the residual over the subspace formed~\cite{}. + +GMRES is one of the most widely used Krylov iterative method for solving sparse and large linear systems. It is developed by Saad and al.~\cite{Saad86} as a generalized method to deal with unsymmetric and non-Hermitian problems, and indefinite symmetric problems too. In its original version called full GMRES, it minimizes the residual over the current Krylov subspace until convergence in at most $n$ iterations, where $n$ is the size of the sparse matrix. It should be noted that full GMRES is too expensive in the case of large matrices since the required orthogonalization process per iteration grows quadratically with the number of iterations. For that reason, in practice GMRES is restarted after each $m\ll n$ iterations to avoid the storage of a large orthonormal basis. However, the convergence behavior of the restarted GMRES, called GMRES($m$), in many cases depends quite critically on the value of $m$~\cite{Huang89}. Therefore in most cases, a preconditioning technique is applied to the restarted GMRES method in order to improve its convergence. + +In order to enhance the robustness of Krylov iterative solvers, some techniques have been proposed allowing the use of different preconditioners, if necessary, within the iteration instead of restarting. Those techniques may lead to considerable savings in CPU time and memory requirements. Van der Vorst in~\cite{Vorst94} has proposed variants of the GMRES algorithm in which a different preconditioner is applied in each iteration, so-called GMRESR family of nested methods. In fact, the GMRES method is effectively preconditioned with other iterative schemes (or GMRES itself), where the iterations of the GMRES method are called outer iterations while the iterations of the preconditioning process referred to as inner iterations. Saad in~\cite{Saad:1993} has proposed FGMRES which is another variant of the GMRES algorithm using a variable preconditioner. In FGMRES the search directions are preconditioned whereas in GMRESR the residuals are preconditioned. However in practice the good preconditioners are those based on direct methods, as ILU preconditioners, which are not easy to parallelize and suffer from the scalability problems on large clusters of thousands of cores. + +% two-stage, communication avoiding + %%%********************************************************* %%%********************************************************* @@ -654,10 +661,10 @@ appropriate than a single direct method in a parallel context. \Input $A$ (sparse matrix), $b$ (right-hand side) \Output $x$ (solution vector)\vspace{0.2cm} \State Set the initial guess $x_0$ - \For {$k=1,2,3,\ldots$ until convergence (error$<\epsilon_{tsirm}$)} \label{algo:conv} + \For {$k=1,2,3,\ldots$ until convergence ($error<\epsilon_{tsirm}$)} \label{algo:conv} \State $[x_k,error]=Solve(A,b,x_{k-1},max\_iter_{kryl})$ \label{algo:solve} - \State $S_{k \mod s}=x_k$ \label{algo:store} \Comment{update column (k mod s) of S} - \If {$k \mod s=0$ {\bf and} error$>\epsilon_{kryl}$} + \State $S_{k \mod s}=x_k$ \label{algo:store} \Comment{update column ($k \mod s$) of $S$} + \If {$k \mod s=0$ {\bf and} $error>\epsilon_{kryl}$} \State $R=AS$ \Comment{compute dense matrix} \label{algo:matrix_mul} \State $\alpha=Least\_Squares(R,b,max\_iter_{ls})$ \label{algo:} \State $x_k=S\alpha$ \Comment{compute new solution} @@ -675,10 +682,10 @@ method. Moreover, a tolerance threshold must be specified for the solver. In practice, this threshold must be much smaller than the convergence threshold of the TSIRM algorithm (\emph{i.e.}, $\epsilon_{tsirm}$). We also consider that after the call of the $Solve$ function, we obtain the vector $x_k$ and the error -which is defined by $||Ax^k-b||_2$. +which is defined by $||Ax_k-b||_2$. Line~\ref{algo:store}, -$S_{k \mod s}=x^k$ consists in copying the solution $x_k$ into the column $k +$S_{k \mod s}=x_k$ consists in copying the solution $x_k$ into the column $k \mod s$ of $S$. After the minimization, the matrix $S$ is reused with the new values of the residuals. To solve the minimization problem, an iterative method is used. Two parameters are required for that: the maximum number of iterations @@ -1099,6 +1106,26 @@ taken into account with TSIRM. \label{fig:02} \end{figure} + +Concerning the experiments some other remarks are interesting. +\begin{itemize} +\item We can tested other examples of PETSc (ex29, ex45, ex49). For all these + examples, we also obtained similar gain between GMRES and TSIRM but those + examples are not scalable with many cores. In general, we had some problems + with more than $4,096$ cores. +\item We have tested many iterative solvers available in PETSc. In fast, it is + possible to use most of them with TSIRM. From our point of view, the condition + to use a solver inside TSIRM is that the solver must have a restart + feature. More precisely, the solver must support to be stoped and restarted + without decrease its converge. That is why with GMRES we stop it when it is + naturraly restarted (i.e. with $m$ the restart parameter). The Conjugate + Gradient (CG) and all its variants do not have ``restarted'' version in PETSc, + so they are not efficient. They will converge with TSIRM but not quickly + because if we compare a normal CG with a CG for which we stop it each 16 + iterations for example, the normal CG will be for more efficient. Some + restarted CG or CG variant versions exist and may be interested to study in + future works. +\end{itemize} %%%********************************************************* %%%********************************************************* @@ -1121,13 +1148,14 @@ experiments up to 16,394 cores have been led to verify that TSIRM runs 5 or 7 times faster than GMRES. -For future work, the authors' intention is to investigate -other kinds of matrices, problems, and inner solvers. The -influence of all parameters must be tested too, while -other methods to minimize the residuals must be regarded. -The number of outer iterations to minimize should become -adaptative to improve the overall performances of the proposal. -Finally, this solver will be implemented inside PETSc. +For future work, the authors' intention is to investigate other kinds of +matrices, problems, and inner solvers. The influence of all parameters must be +tested too, while other methods to minimize the residuals must be regarded. The +number of outer iterations to minimize should become adaptative to improve the +overall performances of the proposal. Finally, this solver will be implemented +inside PETSc. This would be very interesting because it would allow us to test +all the non-linear examples and compare our algorithm with the other algorithm +implemented in PETSc. % conference papers do not normally have an appendix