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[ancetre.git] / closedgenomes.tex

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@@ -53,9 +53,23 @@ vectors of Boolean values.
 % plus il y a de diff, plus le nombre est élevé
 
 
 % plus il y a de diff, plus le nombre est élevé
 
 

-\subsection{}

 
 % 4/ Using EPFL method
 
 % 4/ Using EPFL method

+\subsection{Adjacency based metric}
+Following~\cite{23424133}, a sequence 
+of all the adjacencies, which is present in 
+a genomes at least is computed. This sequence
+is augmented with the pan genome content.
+Then, each genome is compared 
+with such a sequence and a boolean vector is produced with the following rule. 
+%If the element $i$ in the sequence of adjacencies or content is present 
+%in the genome, the 
+
+
+
+
+
+

 \subsection{Shared Synteny based Metric}
 Given two genomes abstracted as sequences of classes, it is classical
 to computes all the maximum shared synteny chains. 
 \subsection{Shared Synteny based Metric}
 Given two genomes abstracted as sequences of classes, it is classical
 to computes all the maximum shared synteny chains.