X-Git-Url: https://bilbo.iut-bm.univ-fcomte.fr/and/gitweb/ancetre.git/blobdiff_plain/014ab041d18a034bfd4827cc403871e4f28776d8..HEAD:/closedgenomes.tex?ds=sidebyside

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+++ b/closedgenomes.tex
@@ -53,9 +53,23 @@ vectors of Boolean values.
 % plus il y a de diff, plus le nombre est élevé
 
 
-\subsection{}
 
 % 4/ Using EPFL method
+\subsection{Adjacency based metric}
+Following~\cite{23424133}, a sequence 
+of all the adjacencies, which is present in 
+a genomes at least is computed. This sequence
+is augmented with the pan genome content.
+Then, each genome is compared 
+with such a sequence and a boolean vector is produced with the following rule. 
+%If the element $i$ in the sequence of adjacencies or content is present 
+%in the genome, the 
+
+
+
+
+
+
 \subsection{Shared Synteny based Metric}
 Given two genomes abstracted as sequences of classes, it is classical
 to computes all the maximum shared synteny chains.