From: Jean-François Couchot <couchot@couchot.iut-bm.univ-fcomte.fr>
Date: Mon, 25 Mar 2013 13:28:53 +0000 (+0100)
Subject: ajout travail epfl
X-Git-Url: https://bilbo.iut-bm.univ-fcomte.fr/and/gitweb/ancetre.git/commitdiff_plain/4481eadb9a744686158a551c8823ad848558ff82?ds=inline

ajout travail epfl
---

diff --git a/biblio.bib b/biblio.bib
index 70aea3a..8e29940 100644
--- a/biblio.bib
+++ b/biblio.bib
@@ -65,7 +65,7 @@ ISSN = {1088-9051}
 }
 
 @Article{23424133,
-AUTHOR = {Lin, Yu and Hu, Fei and Tang, Jijun and Moret, Bernard M E}
+AUTHOR = {Lin, Yu and Hu, Fei and Tang, Jijun and Moret, Bernard M E},
 TITLE = {Maximum likelihood phylogenetic reconstruction from high-resolution whole-genome data and a tree of 68 eukaryotes.},
 JOURNAL = {Pac Symp Biocomput},
 VOLUME = {},
@@ -74,5 +74,5 @@ NUMBER = {},
 PAGES = {285-96},
 URL = {http://www.biomedsearch.com/nih/Maximum-likelihood-phylogenetic-reconstruction-from/23424133.html},
 PubMedID = {23424133},
-ISSN = {2335-6936},
+ISSN = {2335-6936}
 }
\ No newline at end of file
diff --git a/closedgenomes.tex b/closedgenomes.tex
index 5ee33c2..4b7ecd4 100644
--- a/closedgenomes.tex
+++ b/closedgenomes.tex
@@ -56,7 +56,14 @@ vectors of Boolean values.
 
 % 4/ Using EPFL method
 \subsection{Adjacency based metric}
-23424133
+Following~\cite{23424133}, a sequence 
+of all the adjacencies, which is present in 
+a genomes at least is computed. This sequence
+is augmented with the pan genome content.
+Then, each genome is compared 
+with such a sequence and a boolean vector is produced with the following rule. 
+%If the element $i$ in the sequence of adjacencies or content is present 
+%in the genome, the