From 4481eadb9a744686158a551c8823ad848558ff82 Mon Sep 17 00:00:00 2001 From: =?utf8?q?Jean-Fran=C3=A7ois=20Couchot?= Date: Mon, 25 Mar 2013 14:28:53 +0100 Subject: [PATCH] ajout travail epfl --- biblio.bib | 4 ++-- closedgenomes.tex | 9 ++++++++- 2 files changed, 10 insertions(+), 3 deletions(-) diff --git a/biblio.bib b/biblio.bib index 70aea3a..8e29940 100644 --- a/biblio.bib +++ b/biblio.bib @@ -65,7 +65,7 @@ ISSN = {1088-9051} } @Article{23424133, -AUTHOR = {Lin, Yu and Hu, Fei and Tang, Jijun and Moret, Bernard M E} +AUTHOR = {Lin, Yu and Hu, Fei and Tang, Jijun and Moret, Bernard M E}, TITLE = {Maximum likelihood phylogenetic reconstruction from high-resolution whole-genome data and a tree of 68 eukaryotes.}, JOURNAL = {Pac Symp Biocomput}, VOLUME = {}, @@ -74,5 +74,5 @@ NUMBER = {}, PAGES = {285-96}, URL = {http://www.biomedsearch.com/nih/Maximum-likelihood-phylogenetic-reconstruction-from/23424133.html}, PubMedID = {23424133}, -ISSN = {2335-6936}, +ISSN = {2335-6936} } \ No newline at end of file diff --git a/closedgenomes.tex b/closedgenomes.tex index 5ee33c2..4b7ecd4 100644 --- a/closedgenomes.tex +++ b/closedgenomes.tex @@ -56,7 +56,14 @@ vectors of Boolean values. % 4/ Using EPFL method \subsection{Adjacency based metric} -23424133 +Following~\cite{23424133}, a sequence +of all the adjacencies, which is present in +a genomes at least is computed. This sequence +is augmented with the pan genome content. +Then, each genome is compared +with such a sequence and a boolean vector is produced with the following rule. +%If the element $i$ in the sequence of adjacencies or content is present +%in the genome, the -- 2.39.5