update embedded fonts

[book_gpu.git] / BookGPU / Chapters / chapter17 / ch17.aux

diff --git a/BookGPU/Chapters/chapter17/ch17.aux b/BookGPU/Chapters/chapter17/ch17.aux
index 005df6d9070c5400b91540571733671a861620ce..4f932bde4d0187c7cb8028fc3988d7447a432347 100644 (file)
--- a/BookGPU/Chapters/chapter17/ch17.aux
+++ b/BookGPU/Chapters/chapter17/ch17.aux
@@ -6,76 +6,76 @@
 \@writefile{toc}{\author{B\IeC {\'e}n\IeC {\'e}dicte Herrmann}{}}
 \@writefile{toc}{\author{Laurent Philippe}{}}
 \@writefile{loa}{\addvspace {10\p@ }}
 \@writefile{toc}{\author{B\IeC {\'e}n\IeC {\'e}dicte Herrmann}{}}
 \@writefile{toc}{\author{Laurent Philippe}{}}
 \@writefile{loa}{\addvspace {10\p@ }}

-\@writefile{toc}{\contentsline {chapter}{\numberline {17}Implementing Multi-Agent Systems on GPU}{395}}
+\@writefile{toc}{\contentsline {chapter}{\numberline {17}Implementing Multi-Agent Systems on GPU}{399}}

 \@writefile{lof}{\addvspace {10\p@ }}
 \@writefile{lot}{\addvspace {10\p@ }}
 \@writefile{lof}{\addvspace {10\p@ }}
 \@writefile{lot}{\addvspace {10\p@ }}

-\newlabel{chapter17}{{17}{396}}
-\@writefile{toc}{\contentsline {section}{\numberline {17.1}Introduction}{396}}
-\newlabel{ch17:intro}{{17.1}{396}}
-\@writefile{toc}{\contentsline {section}{\numberline {17.2}Running Agent-Based Simulations}{397}}
-\newlabel{ch17:ABM}{{17.2}{397}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {17.2.1}Multi-agent systems and parallelism}{397}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {17.2.2}MAS Implementation on GPU}{399}}
-\newlabel{ch17:subsec:gpu}{{17.2.2}{399}}
-\@writefile{toc}{\contentsline {section}{\numberline {17.3}A first practical example}{400}}
-\newlabel{ch17:sec:1stmodel}{{17.3}{400}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {17.3.1}The Collembola model}{400}}
-\newlabel{ch17:subsec:collembolamodel}{{17.3.1}{400}}
-\@writefile{lof}{\contentsline {figure}{\numberline {17.1}{\ignorespaces Evolution algorithm of Collembola model\relax }}{401}}
-\newlabel{ch17:fig:collem_algorithm}{{17.1}{401}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {17.3.2}Collembola Implementation}{401}}
-\newlabel{ch17:listing:collembola-diffuse}{{17.1}{402}}
-\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.1}Collembola OpenCL Diffusion kernel}{402}}
-\newlabel{ch17:listing:collembola-reduc}{{17.2}{402}}
-\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.2}Collembola OpenCL reduction kernel}{402}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {17.3.3}Collembola performance}{403}}
-\@writefile{lof}{\contentsline {figure}{\numberline {17.2}{\ignorespaces Performance of the Collembola model on CPU and GPU\relax }}{404}}
-\newlabel{ch17:fig:mior_perfs_collem}{{17.2}{404}}
-\@writefile{toc}{\contentsline {section}{\numberline {17.4}Second example}{404}}
-\newlabel{ch17:sec:2ndmodel}{{17.4}{404}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {17.4.1}The MIOR model}{404}}
-\newlabel{ch17:subsec:miormodel}{{17.4.1}{404}}
-\@writefile{loa}{\contentsline {algocf}{\numberline {19}{\ignorespaces Evolution step of each Meta-Mior (microbial colony) agent\relax }}{405}}
-\newlabel{ch17:seqalgo}{{19}{405}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {17.4.2}MIOR Implementation}{405}}
-\@writefile{lof}{\contentsline {figure}{\numberline {17.3}{\ignorespaces Execution distribution retained on GPU\relax }}{406}}
-\newlabel{ch17:fig:gpu_distribution}{{17.3}{406}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {17.4.2.1}Execution mapping on GPU}{406}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {17.4.2.2}Data structures translation}{407}}
-\newlabel{ch17:subsec:datastructures}{{17.4.2.2}{407}}
-\newlabel{ch17:listing:mior_data_structures}{{17.3}{407}}
-\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.3}Main data structures used in a MIOR simulation}{407}}
-\@writefile{lof}{\contentsline {figure}{\numberline {17.4}{\ignorespaces Compact representation of the topology of a MIOR simulation\relax }}{408}}
-\newlabel{ch17:fig:csr_representation}{{17.4}{408}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {17.4.2.3}Critical resources access management}{408}}
-\newlabel{ch17:subsec:concurrency}{{17.4.2.3}{408}}
-\newlabel{ch17:listing:mior_kernels}{{17.4}{409}}
-\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.4}Main MIOR kernel}{409}}
-\newlabel{ch17:fig:mior_launcher}{{17.5}{410}}
-\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.5}MIOR simulation launcher}{410}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {17.4.2.4}Termination detection}{410}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {17.4.3}Performance of MIOR implementations}{411}}
-\newlabel{ch17:subsec:miorexperiments}{{17.4.3}{411}}
-\@writefile{lof}{\contentsline {figure}{\numberline {17.5}{\ignorespaces CPU and GPU performance on a Tesla C1060 node\relax }}{412}}
-\newlabel{ch17:fig:mior_perfs_tesla}{{17.5}{412}}
-\@writefile{lof}{\contentsline {figure}{\numberline {17.6}{\ignorespaces CPU and GPU performance on a personal computer with a Geforce 8800GT\relax }}{413}}
-\newlabel{ch17:fig:mior_perfs_8800gt}{{17.6}{413}}
-\@writefile{toc}{\contentsline {section}{\numberline {17.5}Analysis and recommendations}{413}}
-\newlabel{ch17:analysis}{{17.5}{413}}
-\@writefile{lof}{\contentsline {figure}{\numberline {17.7}{\ignorespaces Execution time of one multi-simulation kernel on the Tesla platform\relax }}{414}}
-\newlabel{ch17:fig:monokernel_graph}{{17.7}{414}}
-\@writefile{lof}{\contentsline {figure}{\numberline {17.8}{\ignorespaces Total execution time for 1000 simulations on the Tesla platform, while varying the number of simulations for each kernel\relax }}{414}}
-\newlabel{ch17:fig:multikernel_graph}{{17.8}{414}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {17.5.1}Analysis}{414}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {17.5.2}MAS execution workflow}{415}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {17.5.3}Implementation challenges}{416}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {17.5.4}MCSMA}{416}}
-\newlabel{ch17:Mcsma}{{17.5.4}{416}}
-\@writefile{toc}{\contentsline {section}{\numberline {17.6}Conclusion}{417}}
-\newlabel{ch17:conclusion}{{17.6}{417}}
-\@writefile{toc}{\contentsline {section}{Bibliography}{418}}
+\newlabel{chapter17}{{17}{400}}
+\@writefile{toc}{\contentsline {section}{\numberline {17.1}Introduction}{400}}
+\newlabel{ch17:intro}{{17.1}{400}}
+\@writefile{toc}{\contentsline {section}{\numberline {17.2}Running Agent-Based Simulations}{401}}
+\newlabel{ch17:ABM}{{17.2}{401}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {17.2.1}Multi-agent systems and parallelism}{401}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {17.2.2}MAS Implementation on GPU}{403}}
+\newlabel{ch17:subsec:gpu}{{17.2.2}{403}}
+\@writefile{toc}{\contentsline {section}{\numberline {17.3}A first practical example}{404}}
+\newlabel{ch17:sec:1stmodel}{{17.3}{404}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {17.3.1}The Collembola model}{404}}
+\newlabel{ch17:subsec:collembolamodel}{{17.3.1}{404}}
+\@writefile{lof}{\contentsline {figure}{\numberline {17.1}{\ignorespaces Evolution algorithm of Collembola model\relax }}{405}}
+\newlabel{ch17:fig:collem_algorithm}{{17.1}{405}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {17.3.2}Collembola Implementation}{405}}
+\newlabel{ch17:listing:collembola-diffuse}{{17.1}{406}}
+\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.1}Collembola OpenCL Diffusion kernel}{406}}
+\newlabel{ch17:listing:collembola-reduc}{{17.2}{406}}
+\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.2}Collembola OpenCL reduction kernel}{406}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {17.3.3}Collembola performance}{407}}
+\@writefile{lof}{\contentsline {figure}{\numberline {17.2}{\ignorespaces Performance of the Collembola model on CPU and GPU\relax }}{408}}
+\newlabel{ch17:fig:mior_perfs_collem}{{17.2}{408}}
+\@writefile{toc}{\contentsline {section}{\numberline {17.4}Second example}{408}}
+\newlabel{ch17:sec:2ndmodel}{{17.4}{408}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {17.4.1}The MIOR model}{408}}
+\newlabel{ch17:subsec:miormodel}{{17.4.1}{408}}
+\@writefile{loa}{\contentsline {algocf}{\numberline {21}{\ignorespaces Evolution step of each Meta-Mior (microbial colony) agent\relax }}{409}}
+\newlabel{ch17:seqalgo}{{21}{409}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {17.4.2}MIOR Implementation}{409}}
+\@writefile{lof}{\contentsline {figure}{\numberline {17.3}{\ignorespaces Execution distribution retained on GPU\relax }}{410}}
+\newlabel{ch17:fig:gpu_distribution}{{17.3}{410}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {17.4.2.1}Execution mapping on GPU}{410}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {17.4.2.2}Data structures translation}{411}}
+\newlabel{ch17:subsec:datastructures}{{17.4.2.2}{411}}
+\newlabel{ch17:listing:mior_data_structures}{{17.3}{411}}
+\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.3}Main data structures used in a MIOR simulation}{411}}
+\@writefile{lof}{\contentsline {figure}{\numberline {17.4}{\ignorespaces Compact representation of the topology of a MIOR simulation\relax }}{412}}
+\newlabel{ch17:fig:csr_representation}{{17.4}{412}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {17.4.2.3}Critical resources access management}{412}}
+\newlabel{ch17:subsec:concurrency}{{17.4.2.3}{412}}
+\newlabel{ch17:listing:mior_kernels}{{17.4}{413}}
+\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.4}Main MIOR kernel}{413}}
+\newlabel{ch17:fig:mior_launcher}{{17.5}{414}}
+\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.5}MIOR simulation launcher}{414}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {17.4.2.4}Termination detection}{414}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {17.4.3}Performance of MIOR implementations}{415}}
+\newlabel{ch17:subsec:miorexperiments}{{17.4.3}{415}}
+\@writefile{lof}{\contentsline {figure}{\numberline {17.5}{\ignorespaces CPU and GPU performance on a Tesla C1060 node\relax }}{416}}
+\newlabel{ch17:fig:mior_perfs_tesla}{{17.5}{416}}
+\@writefile{lof}{\contentsline {figure}{\numberline {17.6}{\ignorespaces CPU and GPU performance on a personal computer with a Geforce 8800GT\relax }}{417}}
+\newlabel{ch17:fig:mior_perfs_8800gt}{{17.6}{417}}
+\@writefile{toc}{\contentsline {section}{\numberline {17.5}Analysis and recommendations}{417}}
+\newlabel{ch17:analysis}{{17.5}{417}}
+\@writefile{lof}{\contentsline {figure}{\numberline {17.7}{\ignorespaces Execution time of one multi-simulation kernel on the Tesla platform\relax }}{418}}
+\newlabel{ch17:fig:monokernel_graph}{{17.7}{418}}
+\@writefile{lof}{\contentsline {figure}{\numberline {17.8}{\ignorespaces Total execution time for 1000 simulations on the Tesla platform, while varying the number of simulations for each kernel\relax }}{418}}
+\newlabel{ch17:fig:multikernel_graph}{{17.8}{418}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {17.5.1}Analysis}{418}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {17.5.2}MAS execution workflow}{419}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {17.5.3}Implementation challenges}{420}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {17.5.4}MCSMA}{420}}
+\newlabel{ch17:Mcsma}{{17.5.4}{420}}
+\@writefile{toc}{\contentsline {section}{\numberline {17.6}Conclusion}{421}}
+\newlabel{ch17:conclusion}{{17.6}{421}}
+\@writefile{toc}{\contentsline {section}{Bibliography}{422}}

 \@setckpt{Chapters/chapter17/ch17}{
 \@setckpt{Chapters/chapter17/ch17}{

-\setcounter{page}{422}
+\setcounter{page}{426}

 \setcounter{equation}{0}
 \setcounter{enumi}{3}
 \setcounter{enumii}{0}
 \setcounter{equation}{0}
 \setcounter{enumi}{3}
 \setcounter{enumii}{0}


@@ -101,9 +101,9 @@
 \setcounter{lstnumber}{21}
 \setcounter{ContinuedFloat}{0}
 \setcounter{AlgoLine}{17}
 \setcounter{lstnumber}{21}
 \setcounter{ContinuedFloat}{0}
 \setcounter{AlgoLine}{17}

-\setcounter{algocfline}{19}
-\setcounter{algocfproc}{19}
-\setcounter{algocf}{19}
+\setcounter{algocfline}{21}
+\setcounter{algocfproc}{21}
+\setcounter{algocf}{21}

 \setcounter{nprt@mantissa@digitsbefore}{0}
 \setcounter{nprt@mantissa@digitsafter}{0}
 \setcounter{nprt@exponent@digitsbefore}{0}
 \setcounter{nprt@mantissa@digitsbefore}{0}
 \setcounter{nprt@mantissa@digitsafter}{0}
 \setcounter{nprt@exponent@digitsbefore}{0}