X-Git-Url: https://bilbo.iut-bm.univ-fcomte.fr/and/gitweb/book_gpu.git/blobdiff_plain/620e57fe130fbf0a4aa2cba23938159c7ab14719..d6c0eb8af968b2b5d3562240345777b17776520b:/BookGPU/Chapters/chapter17/ch17.aux diff --git a/BookGPU/Chapters/chapter17/ch17.aux b/BookGPU/Chapters/chapter17/ch17.aux index 005df6d..1745216 100644 --- a/BookGPU/Chapters/chapter17/ch17.aux +++ b/BookGPU/Chapters/chapter17/ch17.aux @@ -6,76 +6,76 @@ \@writefile{toc}{\author{B\IeC {\'e}n\IeC {\'e}dicte Herrmann}{}} \@writefile{toc}{\author{Laurent Philippe}{}} \@writefile{loa}{\addvspace {10\p@ }} -\@writefile{toc}{\contentsline {chapter}{\numberline {17}Implementing Multi-Agent Systems on GPU}{395}} +\@writefile{toc}{\contentsline {chapter}{\numberline {17}Implementing Multi-Agent Systems on GPU}{397}} \@writefile{lof}{\addvspace {10\p@ }} \@writefile{lot}{\addvspace {10\p@ }} -\newlabel{chapter17}{{17}{396}} -\@writefile{toc}{\contentsline {section}{\numberline {17.1}Introduction}{396}} -\newlabel{ch17:intro}{{17.1}{396}} -\@writefile{toc}{\contentsline {section}{\numberline {17.2}Running Agent-Based Simulations}{397}} -\newlabel{ch17:ABM}{{17.2}{397}} -\@writefile{toc}{\contentsline {subsection}{\numberline {17.2.1}Multi-agent systems and parallelism}{397}} -\@writefile{toc}{\contentsline {subsection}{\numberline {17.2.2}MAS Implementation on GPU}{399}} -\newlabel{ch17:subsec:gpu}{{17.2.2}{399}} -\@writefile{toc}{\contentsline {section}{\numberline {17.3}A first practical example}{400}} -\newlabel{ch17:sec:1stmodel}{{17.3}{400}} -\@writefile{toc}{\contentsline {subsection}{\numberline {17.3.1}The Collembola model}{400}} -\newlabel{ch17:subsec:collembolamodel}{{17.3.1}{400}} -\@writefile{lof}{\contentsline {figure}{\numberline {17.1}{\ignorespaces Evolution algorithm of Collembola model\relax }}{401}} -\newlabel{ch17:fig:collem_algorithm}{{17.1}{401}} -\@writefile{toc}{\contentsline {subsection}{\numberline {17.3.2}Collembola Implementation}{401}} -\newlabel{ch17:listing:collembola-diffuse}{{17.1}{402}} -\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.1}Collembola OpenCL Diffusion kernel}{402}} -\newlabel{ch17:listing:collembola-reduc}{{17.2}{402}} -\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.2}Collembola OpenCL reduction kernel}{402}} -\@writefile{toc}{\contentsline {subsection}{\numberline {17.3.3}Collembola performance}{403}} -\@writefile{lof}{\contentsline {figure}{\numberline {17.2}{\ignorespaces Performance of the Collembola model on CPU and GPU\relax }}{404}} -\newlabel{ch17:fig:mior_perfs_collem}{{17.2}{404}} -\@writefile{toc}{\contentsline {section}{\numberline {17.4}Second example}{404}} -\newlabel{ch17:sec:2ndmodel}{{17.4}{404}} -\@writefile{toc}{\contentsline {subsection}{\numberline {17.4.1}The MIOR model}{404}} -\newlabel{ch17:subsec:miormodel}{{17.4.1}{404}} -\@writefile{loa}{\contentsline {algocf}{\numberline {19}{\ignorespaces Evolution step of each Meta-Mior (microbial colony) agent\relax }}{405}} -\newlabel{ch17:seqalgo}{{19}{405}} -\@writefile{toc}{\contentsline {subsection}{\numberline {17.4.2}MIOR Implementation}{405}} -\@writefile{lof}{\contentsline {figure}{\numberline {17.3}{\ignorespaces Execution distribution retained on GPU\relax }}{406}} -\newlabel{ch17:fig:gpu_distribution}{{17.3}{406}} -\@writefile{toc}{\contentsline {subsubsection}{\numberline {17.4.2.1}Execution mapping on GPU}{406}} -\@writefile{toc}{\contentsline {subsubsection}{\numberline {17.4.2.2}Data structures translation}{407}} -\newlabel{ch17:subsec:datastructures}{{17.4.2.2}{407}} -\newlabel{ch17:listing:mior_data_structures}{{17.3}{407}} -\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.3}Main data structures used in a MIOR simulation}{407}} -\@writefile{lof}{\contentsline {figure}{\numberline {17.4}{\ignorespaces Compact representation of the topology of a MIOR simulation\relax }}{408}} -\newlabel{ch17:fig:csr_representation}{{17.4}{408}} -\@writefile{toc}{\contentsline {subsubsection}{\numberline {17.4.2.3}Critical resources access management}{408}} -\newlabel{ch17:subsec:concurrency}{{17.4.2.3}{408}} -\newlabel{ch17:listing:mior_kernels}{{17.4}{409}} -\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.4}Main MIOR kernel}{409}} -\newlabel{ch17:fig:mior_launcher}{{17.5}{410}} -\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.5}MIOR simulation launcher}{410}} -\@writefile{toc}{\contentsline {subsubsection}{\numberline {17.4.2.4}Termination detection}{410}} -\@writefile{toc}{\contentsline {subsection}{\numberline {17.4.3}Performance of MIOR implementations}{411}} -\newlabel{ch17:subsec:miorexperiments}{{17.4.3}{411}} -\@writefile{lof}{\contentsline {figure}{\numberline {17.5}{\ignorespaces CPU and GPU performance on a Tesla C1060 node\relax }}{412}} -\newlabel{ch17:fig:mior_perfs_tesla}{{17.5}{412}} -\@writefile{lof}{\contentsline {figure}{\numberline {17.6}{\ignorespaces CPU and GPU performance on a personal computer with a Geforce 8800GT\relax }}{413}} -\newlabel{ch17:fig:mior_perfs_8800gt}{{17.6}{413}} -\@writefile{toc}{\contentsline {section}{\numberline {17.5}Analysis and recommendations}{413}} -\newlabel{ch17:analysis}{{17.5}{413}} -\@writefile{lof}{\contentsline {figure}{\numberline {17.7}{\ignorespaces Execution time of one multi-simulation kernel on the Tesla platform\relax }}{414}} -\newlabel{ch17:fig:monokernel_graph}{{17.7}{414}} -\@writefile{lof}{\contentsline {figure}{\numberline {17.8}{\ignorespaces Total execution time for 1000 simulations on the Tesla platform, while varying the number of simulations for each kernel\relax }}{414}} -\newlabel{ch17:fig:multikernel_graph}{{17.8}{414}} -\@writefile{toc}{\contentsline {subsection}{\numberline {17.5.1}Analysis}{414}} -\@writefile{toc}{\contentsline {subsection}{\numberline {17.5.2}MAS execution workflow}{415}} -\@writefile{toc}{\contentsline {subsection}{\numberline {17.5.3}Implementation challenges}{416}} -\@writefile{toc}{\contentsline {subsection}{\numberline {17.5.4}MCSMA}{416}} -\newlabel{ch17:Mcsma}{{17.5.4}{416}} -\@writefile{toc}{\contentsline {section}{\numberline {17.6}Conclusion}{417}} -\newlabel{ch17:conclusion}{{17.6}{417}} -\@writefile{toc}{\contentsline {section}{Bibliography}{418}} +\newlabel{chapter17}{{17}{398}} +\@writefile{toc}{\contentsline {section}{\numberline {17.1}Introduction}{398}} +\newlabel{ch17:intro}{{17.1}{398}} +\@writefile{toc}{\contentsline {section}{\numberline {17.2}Running Agent-Based Simulations}{399}} +\newlabel{ch17:ABM}{{17.2}{399}} +\@writefile{toc}{\contentsline {subsection}{\numberline {17.2.1}Multi-agent systems and parallelism}{399}} +\@writefile{toc}{\contentsline {subsection}{\numberline {17.2.2}MAS Implementation on GPU}{401}} +\newlabel{ch17:subsec:gpu}{{17.2.2}{401}} +\@writefile{toc}{\contentsline {section}{\numberline {17.3}A first practical example}{402}} +\newlabel{ch17:sec:1stmodel}{{17.3}{402}} +\@writefile{toc}{\contentsline {subsection}{\numberline {17.3.1}The Collembola model}{402}} +\newlabel{ch17:subsec:collembolamodel}{{17.3.1}{402}} +\@writefile{lof}{\contentsline {figure}{\numberline {17.1}{\ignorespaces Evolution algorithm of Collembola model\relax }}{403}} +\newlabel{ch17:fig:collem_algorithm}{{17.1}{403}} +\@writefile{toc}{\contentsline {subsection}{\numberline {17.3.2}Collembola Implementation}{403}} +\newlabel{ch17:listing:collembola-diffuse}{{17.1}{404}} +\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.1}Collembola OpenCL Diffusion kernel}{404}} +\newlabel{ch17:listing:collembola-reduc}{{17.2}{404}} +\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.2}Collembola OpenCL reduction kernel}{404}} +\@writefile{toc}{\contentsline {subsection}{\numberline {17.3.3}Collembola performance}{405}} +\@writefile{lof}{\contentsline {figure}{\numberline {17.2}{\ignorespaces Performance of the Collembola model on CPU and GPU\relax }}{406}} +\newlabel{ch17:fig:mior_perfs_collem}{{17.2}{406}} +\@writefile{toc}{\contentsline {section}{\numberline {17.4}Second example}{406}} +\newlabel{ch17:sec:2ndmodel}{{17.4}{406}} +\@writefile{toc}{\contentsline {subsection}{\numberline {17.4.1}The MIOR model}{406}} +\newlabel{ch17:subsec:miormodel}{{17.4.1}{406}} +\@writefile{loa}{\contentsline {algocf}{\numberline {21}{\ignorespaces Evolution step of each Meta-Mior (microbial colony) agent\relax }}{407}} +\newlabel{ch17:seqalgo}{{21}{407}} +\@writefile{toc}{\contentsline {subsection}{\numberline {17.4.2}MIOR Implementation}{407}} +\@writefile{lof}{\contentsline {figure}{\numberline {17.3}{\ignorespaces Execution distribution retained on GPU\relax }}{408}} +\newlabel{ch17:fig:gpu_distribution}{{17.3}{408}} +\@writefile{toc}{\contentsline {subsubsection}{\numberline {17.4.2.1}Execution mapping on GPU}{408}} +\@writefile{toc}{\contentsline {subsubsection}{\numberline {17.4.2.2}Data structures translation}{409}} +\newlabel{ch17:subsec:datastructures}{{17.4.2.2}{409}} +\newlabel{ch17:listing:mior_data_structures}{{17.3}{409}} +\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.3}Main data structures used in a MIOR simulation}{409}} +\@writefile{lof}{\contentsline {figure}{\numberline {17.4}{\ignorespaces Compact representation of the topology of a MIOR simulation\relax }}{410}} +\newlabel{ch17:fig:csr_representation}{{17.4}{410}} +\@writefile{toc}{\contentsline {subsubsection}{\numberline {17.4.2.3}Critical resources access management}{410}} +\newlabel{ch17:subsec:concurrency}{{17.4.2.3}{410}} +\newlabel{ch17:listing:mior_kernels}{{17.4}{411}} +\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.4}Main MIOR kernel}{411}} +\newlabel{ch17:fig:mior_launcher}{{17.5}{412}} +\@writefile{lol}{\contentsline {lstlisting}{\numberline {17.5}MIOR simulation launcher}{412}} +\@writefile{toc}{\contentsline {subsubsection}{\numberline {17.4.2.4}Termination detection}{412}} +\@writefile{toc}{\contentsline {subsection}{\numberline {17.4.3}Performance of MIOR implementations}{413}} +\newlabel{ch17:subsec:miorexperiments}{{17.4.3}{413}} +\@writefile{lof}{\contentsline {figure}{\numberline {17.5}{\ignorespaces CPU and GPU performance on a Tesla C1060 node\relax }}{414}} +\newlabel{ch17:fig:mior_perfs_tesla}{{17.5}{414}} +\@writefile{lof}{\contentsline {figure}{\numberline {17.6}{\ignorespaces CPU and GPU performance on a personal computer with a Geforce 8800GT\relax }}{415}} +\newlabel{ch17:fig:mior_perfs_8800gt}{{17.6}{415}} +\@writefile{toc}{\contentsline {section}{\numberline {17.5}Analysis and recommendations}{415}} +\newlabel{ch17:analysis}{{17.5}{415}} +\@writefile{lof}{\contentsline {figure}{\numberline {17.7}{\ignorespaces Execution time of one multi-simulation kernel on the Tesla platform\relax }}{416}} +\newlabel{ch17:fig:monokernel_graph}{{17.7}{416}} +\@writefile{lof}{\contentsline {figure}{\numberline {17.8}{\ignorespaces Total execution time for 1000 simulations on the Tesla platform, while varying the number of simulations for each kernel\relax }}{416}} +\newlabel{ch17:fig:multikernel_graph}{{17.8}{416}} +\@writefile{toc}{\contentsline {subsection}{\numberline {17.5.1}Analysis}{416}} +\@writefile{toc}{\contentsline {subsection}{\numberline {17.5.2}MAS execution workflow}{417}} +\@writefile{toc}{\contentsline {subsection}{\numberline {17.5.3}Implementation challenges}{418}} +\@writefile{toc}{\contentsline {subsection}{\numberline {17.5.4}MCSMA}{418}} +\newlabel{ch17:Mcsma}{{17.5.4}{418}} +\@writefile{toc}{\contentsline {section}{\numberline {17.6}Conclusion}{419}} +\newlabel{ch17:conclusion}{{17.6}{419}} +\@writefile{toc}{\contentsline {section}{Bibliography}{420}} \@setckpt{Chapters/chapter17/ch17}{ -\setcounter{page}{422} +\setcounter{page}{424} \setcounter{equation}{0} \setcounter{enumi}{3} \setcounter{enumii}{0} @@ -101,9 +101,9 @@ \setcounter{lstnumber}{21} \setcounter{ContinuedFloat}{0} \setcounter{AlgoLine}{17} -\setcounter{algocfline}{19} -\setcounter{algocfproc}{19} -\setcounter{algocf}{19} +\setcounter{algocfline}{21} +\setcounter{algocfproc}{21} +\setcounter{algocf}{21} \setcounter{nprt@mantissa@digitsbefore}{0} \setcounter{nprt@mantissa@digitsafter}{0} \setcounter{nprt@exponent@digitsbefore}{0}