From: couturie Date: Wed, 31 Jul 2013 15:38:03 +0000 (+0200) Subject: new X-Git-Url: https://bilbo.iut-bm.univ-fcomte.fr/and/gitweb/book_gpu.git/commitdiff_plain/aa5e4797e8e8585b78ee799ff26314839eac0d13?ds=sidebyside new --- diff --git a/BookGPU/Chapters/chapter9/ch9.tex b/BookGPU/Chapters/chapter9/ch9.tex index a78e633..caf17c4 100644 --- a/BookGPU/Chapters/chapter9/ch9.tex +++ b/BookGPU/Chapters/chapter9/ch9.tex @@ -6,7 +6,7 @@ \chapterauthor{Nouredine Melab}{Université Lille 1, LIFL/UMR CNRS 8022, 59655-Villeneuve d'Ascq cedex, France} -\chapter{Parallel GPU-accelerated Metaheuristics} +\chapter{Parallel GPU-accelerated metaheuristics} \label{chapter9} \section{Introduction} This chapter presents GPU-based parallel @@ -26,8 +26,7 @@ Section~\ref{ch8:sec:challenges} highlights the main challenges related to the GPU implementation of metaheuristics. A state-of-the-art of GPU-based parallel metaheuristics\index{Metaheuristics!parallel~metaheuristics} is -summarized in Section~\ref{ch8:sec:state}. In Section -Section~\ref{ch8:sec:GPU_APIs}, the main developed GPU-based +summarized in Section~\ref{ch8:sec:state}. In Section~\ref{ch8:sec:frameworks}, the main developed GPU-based frameworks for metaheuristics are described. Finally, a case study is presented in Section~\ref{ch8:sec:case} and some concluding remarks are given in Section~\ref{ch8:conclusion} @@ -56,7 +55,7 @@ for solving an optimization problem, two classes of optimization methods can be distinguished: \emph{exact methods} and \emph{approximate methods}. Exact methods allow one to reach optimal solution(s) of the handled optimization problem with a -proof of its or their optimality. The most known methods of this +proof of its or their optimality. The known methods of this class are the \emph{branch and bound technique}, \emph{dynamic programming}, \emph{constraint programming}, and \emph{A* algorithm}. However, optimization problems, whether practical or @@ -73,7 +72,7 @@ these problems. Indeed, these methods allow one to reach good quality solutions in reasonable computation time compared to exact methods but with no guarantee to find optimal or even bounded solutions. This is due to the nature of the search process adopted -by these approaches which consists in performing a +by these approaches which consists of performing a search in a subset of the whole search space.\\ Regarding the number of solutions considered at each iteration in @@ -120,7 +119,7 @@ methods and the solving of large-sized optimization problems. \item Sequential processor architectures have reached their physical limit which prevents creating faster processors. The current trend of microprocessor manufacturers consists of placing -multiple cores on a single chip. Nowadays, laptops and +multicores on a single chip. Nowadays, laptops and workstations are multicore processors. In addition, the evolution of network technologies and the proliferation of broadband networks have made possible the emergence of clusters of @@ -131,7 +130,7 @@ high-performance computing. From the granularity of parallelism point of view, three major parallel models for metaheuristics can be distinguished~\cite{talbi2009mfdti}: \emph{algorithmic-level}\index{Metaheuristics!algorithmic-level parallelism}, -\emph{iteration-level} \index{Metaheuristics!iteration-level parallelism}, and \emph{solution-level} as illustrated in Figure~\ref{ch8:fig:paraMeta}. \\ +\emph{iteration-level}\index{Metaheuristics!iteration-level parallelism}, and \emph{solution-level} as illustrated in Figure~\ref{ch8:fig:paraMeta}. \\ \begin{figure}[h!] \centerline{\includegraphics[width=0.6\textwidth]{Chapters/chapter9/figures/paraMeta.pdf}} @@ -271,7 +270,7 @@ GPU is achieved when launching a large amount of threads (thousands of threads)~\cite{CUDA}. However, the execution order of these thousands of threads is unknown by the programmer which makes the prediction of their execution order a challenging issue. -On an other hand, the developer has to control explicitly the +Plus, the developer has to control explicitly the threads through the insertion of barrier synchronizations in the codes to avoid concurrent accesses to data structures and to meet some requirements related to data-dependent synchronizations. @@ -290,7 +289,7 @@ algorithm\index{Metaheuristics!genetic~algorithm} and the exploration of different paths using an ant colony\index{Metaheuristics!ant~colony~optimization} are random operations. Threads of the same warp have to execute -simultaneously instructions leading to different branches whereas +instructions simultaneously leading to different branches whereas in an SIMD model the threads of a same warp execute the same instruction. Consequently, the different branches of a conditional instruction which is data-dependent lead to a serial execution of @@ -339,12 +338,11 @@ of General Perpose GPU (GPGPU) brings new challenges for parallel metaheuristics The first works on metaheuristic algorithms implemented on GPUs started on old graphics cards before the appearance of modern GPUs equipped with high-level programming interfaces such as CUDA and -OpenCL. Among these pioneering works we cite the work of Wong -\emph{et al.}~\cite{wongOldGPU2006} dealing with the +OpenCL. Among these pioneering works we cite the work of Wong et al.~\cite{wongOldGPU2006} dealing with the implementation -of EAs on graphics processing cards and the work by Catala \emph{et al.} in~\cite{catala2007} where the ACO\index{Metaheuristics!ant~colony~optimization} algorithm -is implemented on old GPU architectures. Yu \emph{et al.}~\cite{yu2005} and -Li \emph{et al.}~\cite{li2007} proposed a full parallelization of genetic +of EAs on graphics processing cards and the work by Catala et al. in~\cite{catala2007} where the ACO\index{Metaheuristics!ant~colony~optimization} algorithm +is implemented on old GPU architectures. Yu et al.~\cite{yu2005} and +Li et al.~\cite{li2007} proposed a full parallelization of genetic algorithm\index{Metaheuristics!genetic~algorithm}s on old GPU architectures using shader libraries based on Direct3D and OpenGL.\\ @@ -386,12 +384,12 @@ overhead due to the communication and memory latencies. Therefore, large neighborhoods are necessary for efficient implementation of local searches on GPUs.\\ -Luong \emph{et al.}~\cite{luong2010large} proposed efficient +Luong et al.~\cite{luong2010large} proposed efficient mappings for large neighborhood structures on GPUs. In this work, three different neighborhoods are studied and mapped to the hierarchical GPU for binary problems. The three neighborhoods are -based on the \emph{Hamming} distance. The move operators used in -the three neighborhoods consider \emph{Hamming} distances of 1, +based on the Hamming distance. The move operators used in +the three neighborhoods consider Hamming distances of 1, 2, and 3 (this consists on flipping the binary value of one, two, or three positions at a time in the candidate binary vector). In~\cite{luong2010large}, each thread is associated to a unique @@ -402,7 +400,7 @@ solution associated to each CUDA thread's \textit{id}. %For 1-Hamming neighborhoods, as there is exactly n solutions in the neighborhood, the mapping of this neighborhood to CUDA threads is obvious: the CPU host offloads to GPU exactly $n$ threads, and each thread id is associated to one index in the binary vector. In the case of 2-Hamming and 3-Hamming neighborhoods, each thread id should be mapped respectively to two and three indexes in the candidate vector. The three neighborhoods are implemented and experimented on the Permuted Perceptron Problem (PPP) using a tabu search\index{Metaheuristics!tabu~search} algorithm (TS). Accelerations from $9.9 \times$ to $18.5 \times$ are obtained on different problem sizes.\\ % The experiments are performed on an Intel Xeon 8 cores 3GHz coupled with an NVIDIA GTX 280 card.\\ -In the same context, Deevacq \emph{et al.}~\cite{audreyANT} +In the same context, Deevacq et al.~\cite{audreyANT} proposed two parallelization strategies inspired by the multi-walk parallelization strategy, of a 3-opt iterated local search\index{Metaheuristics!iterated local search} algorithm (ILS) @@ -419,7 +417,7 @@ shared memory to store the related data structures. The two strategies have been experimented on standard benchmarks of the Traveling Salesman Problem (TSP) with sizes varying from $100$ to $3038$ cities. The results indicate that increasing the number of solutions to be explored simultaneously improves the speedup in the two strategies, but at the same time it decreases final solution quality. The greater speedup factor reached by the second strategy is $6 \times$.\\ -The same strategy is used by Luong \emph{et al.} +The same strategy is used by Luong et al. in~\cite{luongMultiStart} to implement multistart parallel local search algorithms (a special case of the algorithmic-level\index{Metaheuristics!algorithmic-level @@ -451,10 +449,10 @@ parallelism} with usage of texture memory rise from $7.8\times$ to $12\times$ (for different QAP benchmark sizes). \\ -Janiak \emph{et al.}~\cite{Janiak_et_al_2008} implemented two +Janiak et al.~\cite{Janiak_et_al_2008} implemented two algorithms for TSP and the flow-shop scheduling problem (FSP). These algorithms are based on a multistart tabu -search\index{Metaheuristics!tabu~search} model. Both of the two +search\index{Metaheuristics!tabu~search} model. Both of the algorithms exploit multicore CPU and GPU. A full parallelization on GPU is adopted using shader libraries where each thread is mapped with one tabu search\index{Metaheuristics!tabu~search}. @@ -462,9 +460,9 @@ However, even though their experiments report that the use of GPU speedups the serial execution almost $16 \times$, the mapping of one thread with one tabu search\index{Metaheuristics!tabu~search} requires a large number of local search algorithms to -cover the memory access latency. The same mapping policy is adopted by Zhu \emph{et al.} in~\cite{zhu_et_al_2008} (one thread is associated to one local search) solving the quadratic assignment problem but using the CUDA toolkit instead of shader libraries.\\ +cover the memory access latency. The same mapping policy is adopted by Zhu et al. in~\cite{zhu_et_al_2008} (one thread is associated to one local search) solving the quadratic assignment problem but using the CUDA toolkit instead of shader libraries.\\ -Luong \emph{et al.}~\cite{luong2012ppsn} proposed a GPU-based +Luong et al.~\cite{luong2012ppsn} proposed a GPU-based implementation of hybrid metaheuristics on heterogeneous parallel architectures (multicore CPU coupled to one GPU). The challenge of using such a heterogeneous architecture is how to distribute @@ -473,7 +471,7 @@ optimal performances. Among the three traditional parallel models (solution-level\index{Metaheuristics!solution-level~parallelism}, iteration-level\index{Metaheuristics!iteration-level parallelism}, and algorithmic-level\index{Metaheuristics!algorithmic-level -parallelism}), the authors pointed out that the most convenient +parallelism}), the authors point out that the most convenient model for the considered heterogeneous architecture is a hybrid model combining iteration-level\index{Metaheuristics!iteration-level parallelism} @@ -484,7 +482,7 @@ associated to one CPU core and used to accelerate the neighborhood calculation of several S-metaheuristics at the same time. In order to efficiently exploit the remaining CPU cores, a load-balancing heuristic is also proposed in order to decide on the number of additional -S-metaheuristics to launch on the remaining CPU cores relative to the efficiency of the GPU calculations. The proposed approach is applied to the QAP using several instances of the fast ant colony algorithm (FANT)~\cite{taillardFant}. \\ +S-metaheuristics to launch on the remaining CPU cores relative to the efficiency of the GPU calculations. The proposed approach is applied to the QAP using several instances of the Fast Ant Colony Algorithm (FANT)~\cite{taillardFant}. \\ All the previously noted works exploit the same parallel models used on CPUs based on the task parallelism. A different @@ -497,18 +495,18 @@ swap moves are calculated and stored relative to the initial permutation $p$. For the GPU implementation, the authors used the parallel implementation of neighborhood exploration. The time-consuming tasks in the SA-matrix are identified by the -authors as: updating the matrix and passing through it to select +authors as updating the matrix and passing through it to select the next accepted move. To initialize the delta matrix, several threads from different blocks explore different segments of the matrix (different moves) at the same time. In order to select the -next accepted, swap several threads are also used. Starting from +next accepted swap, several threads are also used. Starting from the last move, a group of threads explores different subsets of the delta matrix. The shared memory is used to preload all the necessary elements for a given group of threads responsible for the updating of the delta matrix. The main difference in this work compared to the previous works resides in the introduction of a data parallelism using the precalculated delta matrix. The use of -this matrix allows the increasing of the number of threads +this matrix allows the increase in the number of threads involved in the evaluation of a single move. Experimentations are done on standard QAP instances from the QAPLIB~\cite{burkard1991qaplib}. Speedups up to $10 \times$ are @@ -530,10 +528,10 @@ colony\index{Metaheuristics!ant~colony~optimization} optimization swarm optimization\index{Metaheuristics!particle swarm optimization} (PSO). -\subsubsection*{Evolutionary Algorithms} +\subsubsection*{Evolutionary algorithms} Traditional parallel models for EAs are classified in three main -classes: coarse grain models using several sub-populations +classes: coarse-grain models using several subpopulations (islands), master-slave models used for the parallelization of CPU intensive steps (evaluation and transformation), and cellular models based on the use of one population disposed (generally) on @@ -566,15 +564,15 @@ related to each individual. The obtained speedups range from $10 \times$ to $47 \times$ for population sizes ranging from $50$ to $10000$. \\ -Maitre \emph{et al.}~\cite{maitre2009} also exploited the +Maitre et al.~\cite{maitre2009} also exploited the master-slave parallelism of EAs on GPUs using EASEA. EASEA is a C-like metalanguage for easy development of EAs. The user writes a -description of the problem specific components (fitness function, +description of the problem-specific components (fitness function, problem representation, etc) in EASEA. The code is then compiled to obtain a ready-to-use evolutionary algorithm\index{Metaheuristics!evolutionary~algorithm}. The EASEA compiler uses genetic -algorithm\index{Metaheuristics!genetic~algorithm}LIB and EO +algorithm\index{Metaheuristics!genetic~algorithm} LIB and EO Libraries to produce C++ or JAVA written EA codes. In~\cite{maitre2009}, the authors proposed an extension of EASEA to produce CUDA code from the EASEA files. This extension has been @@ -585,18 +583,18 @@ during the experiments: a benchmark mathematical function and a real problem (molecular structure prediction). In order to maximize the GPU occupation, very large populations are used (from $2000$ to $20000$). Even though transferring such large -populations from the CPU to the GPU device memory at every generation is very costly, the authors reported important speedups on the two problems on a GTX260 card: $105 \times$ is reported for the benchmark function while for the real problem the reported speedup is $60 \times$. This may be best explained by the complexity of the fitness functions. Nevertheless, there is no indication in the paper about the memory management\index{GPU Challenges!memory~management} of the populations on GPU.\\ +populations from the CPU to the GPU device memory at every generation is very costly, the authors report important speedups on the two problems on a GTX260 card: $105 \times$ is reported for the benchmark function while for the real problem the reported speedup is $60 \times$. This may be best explained by the complexity of the fitness functions. Nevertheless, there is no indication in the paper about the memory management\index{GPU Challenges!memory~management} of the populations on GPU.\\ The master-slave model is efficient when the fitness function is highly time intensive. Nevertheless, it requires the use of large-sized populations in order to saturate the GPU unless the per-block is used (one individual perblock) when the acceleration of the fitness function itself is possible. The use of many -sub-populations of medium sizes is another way to obtain a maximum +subpopulations of medium sizes is another way to obtain a maximum occupation of the GPU. This is coarse-grained parallelism (island model).\\ -The coarse grained model is used by Pospichal \emph{et al.} +The coarse-grained model is used by Pospichal et al. in~\cite{pospichal10} to implement a parallel genetic algorithm\index{Metaheuristics!genetic~algorithm} on GPU. In this work the entire genetic @@ -630,17 +628,16 @@ compared to a single core implementation of a coarse-grained genetic algorithm\index{Metaheuristics!genetic~algorithm} on a Intel i7 processor.\\ -Nowotniak \emph{et al.}~\cite{nowotniak} proposed a GPU-based -implementation of a quantum inspired genetic -algorithm\index{Metaheuristics!genetic~algorithm} (QIGA). The used -parallel model is a hierarchical model based on two levels: each +Nowotniak and Kucharski~\cite{nowotniak} proposed a GPU-based +implementation of a Quantum Inspired Genetic Algorithm\index{Metaheuristics!genetic~algorithm} (QIGA). The +parallel model used is a hierarchical model based on two levels: each thread in a block transforms a unique individual and a different population is assigned to each block. The algorithm is run entirely on GPU. A different instance of the QIGA is run on each block and the computations have been shared between 8 GPUs. This approach is very convenient to speed up the experimental process on metaheuristics that require several independent runs of the -same algorithm in order to asses statistical efficiency. The +same algorithm in order to assess statistical efficiency. The populations are stored in the shared memory, the data matrix used for fitness evaluation is placed in read only constant memory, and finally seeds for random numbers generated on the GPU are stored @@ -654,7 +651,7 @@ EAs) have been used by many authors to implement parallel EAs on GPUs. Indeed, the fine-grained parallelism of EAs fits perfectly to the SIMD architecture of the GPU. \\ -Pinel \emph{et al.} in~\cite{pinel2012JPDC} developed a highly +Pinel et al. in~\cite{pinel2012JPDC} developed a highly parallel synchronous cellular genetic algorithm\index{Metaheuristics!genetic~algorithm} (CGA), called GraphCell, to solve the independent task scheduling problem on GPU @@ -693,7 +690,7 @@ performed on a set of standard benchmark functions with different grid sizes ranging from $32^2$ to $512^2$. The speedups reached by the GPU implementation against the CPU version range from $5\times$ to $24\times$ and increase as the size of the population -increases. However, the CPU implementation run faster than the GPU +increases. However, the CPU implementation runs faster than the GPU version for all the tested benchmarks when the size of the population is set to $32^2$. When the size of the population is too small, there are not enough computations to cover the overhead @@ -701,10 +698,10 @@ created by the call of kernel functions, CPU/GPU communication\index{GPU Challenges!CPU/GPU~communication}s, synchronization, and access to global memory. Finally, an interesting review on GPU parallel computation in bio-inspired -algorithms is proposed by Arenas \emph{et al.} +algorithms is proposed by Arenas et al. in~\cite{arenas2011}. \\ -\subsubsection*{Ant Colony Optimization} +\subsubsection*{Ant colony optimization} Ant colony optimization (ACO\index{Metaheuristics!ant~colony~optimization}) is another @@ -715,7 +712,7 @@ accelerating the tour construction step performed by each ant by taking a task-based parallelism approach, with pheromone deposition on the CPU.\\ -In~\cite{cecilia}, Cecilia \emph{et al.} present a GPU-based +In~\cite{cecilia}, Cecilia et al. present a GPU-based implementation of ACO\index{Metaheuristics!ant~colony~optimization} for TSP where the two steps (tour construction and pheromone update) are @@ -737,10 +734,10 @@ matrices that are easily updated by several threads (one thread per matrix entry). The achieved speedups are $21 \times$ for tour construction and $20 \times$ for pheromone updates.\\ -In another work, Tsutsui \emph{et al.}~\cite{tsutsui} propose a +In another work, Tsutsui and Fujimoto~\cite{tsutsui} propose a hybrid algorithm combining ACO\index{Metaheuristics!ant~colony~optimization} metaheuristic -and tabu search (TS)\index{Metaheuristics!tabu~search} implemented +and Tabu Search (TS)\index{Metaheuristics!tabu~search} implemented on GPU to solve the QAP. A solution of QAP is represented as a permutation of ${1,2,..,n}$ with $n$ being the size of the problem. The TS algorithm is based on the 2-opt neighborhood @@ -771,7 +768,7 @@ compared to the CPU implementation, compared with a speedup of only $5 \times$ when MATA is not used. \\ -\subsubsection*{Particle Swarm Optimization} +\subsubsection*{Particle swarm optimization} In~\cite{zhou2009} Zhou and Tan propose a full GPU implementation of a standard PSO algorithm. All the data is stored in global memory (velocities, positions, swarm population, etc). Only @@ -897,7 +894,7 @@ Algorithmic-level parallelism consists of launching several self-contained algor The implementation of the multistart model is based on two different mapping strategies~\cite{luongMultiStart, audreyANT}: -(1) each local search (LS) is associated to a unique thread and +(1) each Local Search (LS) is associated to a unique thread and (2) each solution (from multiple neighborhoods) is associated to a unique thread. The first mapping strategy (one thread per LS) presents a big drawback: the number of LS to use should be very @@ -943,13 +940,13 @@ The three frameworks reviewed in this section are PUGACE\index{GPU-based frameworks!PUGACE}~\cite{pugace}, ParadisEO-MO-GPU\index{GPU-based frameworks!ParadisEO-MO-GPU}~\cite{paradiseoGPU}, and -libCudaOptimize\index{GPU-based -frameworks!libCudaOptimize}~\cite{libcuda}. PUGACE\index{GPU-based +libCUDAOptimize\index{GPU-based +frameworks!libCUDAOptimize}~\cite{libcuda}. PUGACE\index{GPU-based frameworks!PUGACE} is a framework for implementing EAs on GPUs. ParadisEO-MO-GPU is an extension of the framework ParadisEO~\cite{paradiseo} for implementing s-metaheuristics on -GPU. Finally, libCudaOptimize\index{GPU-based -frameworks!libCudaOptimize} is a library intended for the +GPU. Finally, libCUDAOptimize\index{GPU-based +frameworks!libCUDAOptimize} is a library intended for the implementation of p-metaheuristics on GPU. The three frameworks are presented in more detail in the following. @@ -965,7 +962,7 @@ implementation on GPUs compared to other parallel models for EAs (island, master-slave). The main standard evolutionary operators are already implemented in PUGACE\index{GPU-based frameworks!PUGACE}: different selection strategies, standard -crossover, and mutation operators (\emph{PMX, swap, 2-exchange}, +crossover, and mutation operators (PMX, swap, 2-exchange, etc.). Different problem encoding is also supported. The framework is organized as a set of modules in which the different functionalities are separated as much as possible in order to @@ -986,8 +983,7 @@ crossover is taken at the block level and applied to all the individuals within the block. It is the decision on the choose of the cutting point for the crossover.\\ -The framework is validated on standard benchmarks of the quadratic -assignment problem (QAP). Speedups of $15.44 \times$ to $18.41 +The framework is validated on standard benchmarks of the QAP. Speedups of $15.44 \times$ to $18.41 \times$ are achieved compared to a CPU implementation of a cEA using population sizes rising from 512 to 1024 and from 1024 to 2048. @@ -1005,7 +1001,7 @@ using population sizes rising from 512 to 1024 and from 1024 to \subsection{ParadisEO-MO-GPU} -Melab \emph{et al.}~\cite{paradiseoGPU} developed a reusable +Melab et al.~\cite{paradiseoGPU} developed a reusable framework ParadisEO-MO-GPU\index{GPU-based frameworks!ParadisEO-MO-GPU} for parallel local search metaheuristics (s-metaheuristics) on GPUs. It focuses on the @@ -1046,11 +1042,11 @@ evaluation. After all the neighborhood is generated and evaluated, it is sent back to the CPU which selects the best solution (See Figure~\ref{ch1:fig:paradiseoGPU}). -\subsection{libCudaOptimize: an open source library of GPU-based metaheuristics} +\subsection{libCUDAOptimize: an open source library of GPU-based metaheuristics} \index{GPU-based frameworks!libCudaOptimize} -LibCudaOptimize~\cite{libcuda} is a C++/Cuda open source library +LibCUDAOptimize~\cite{libcuda} is a C++/CUDA open source library for the design and implementation of metaheuristics on GPUs. Until -now, the metaheuristics supported by LibCudaOptimize are: scatter +now, the metaheuristics supported by LibCUDAOptimize are: scatter search, differential evolution, and particle swarm optimization\index{Metaheuristics!particle swarm optimization}. Nevertheless, the library is designed in such a way to allow @@ -1065,9 +1061,9 @@ on CPU. In this case study, a large neighborhood GPU-based local search\index{GPU-based Metaheuristics!GPU-based~local~search} -method for solving the quadratic 3-dimensional assignment problem -(Q3AP) will be presented. The local search method is an iterated -local search\index{Metaheuristics!iterated local search} +method for solving the Quadratic 3-dimensional Assignment Problem +(Q3AP) will be presented. The local search method is an Iterated +Local Search\index{Metaheuristics!iterated local search} (ILS)~\cite{stutzle2006ILSforQAP} using an embedded TS\index{Metaheuristics!tabu~search} algorithm. The ILS principle consists of executing iteratively the embedded local search, each @@ -1089,7 +1085,7 @@ ILS algorithm is given by the Algorithm~\ref{ch8:ils_algorithm_template}.\\ $s^*$=AcceptationCriteria($s^*,s^{*'},history$)\; } -\caption{Iterated local search template} +\caption{iterated local search template} \label{ch8:ils_algorithm_template} \end{algorithm} @@ -1117,7 +1113,7 @@ ILS algorithm is given by the Algorithm~\ref{ch8:ils_algorithm_template}.\\ \subsection{The quadratic 3-dimensional assignment problem} The Q3AP is an extension of the well-known NP-hard QAP. The latter -is one of the most studied problem by the combinatorial +is one of the most studied problems by the combinatorial optimization community due to its wide range of practical applications (site planning, schedule problem, computer-aided design, etc.) and to its computational challenges since it is @@ -1127,7 +1123,7 @@ optimization problems.\\ The Q3AP was first introduced by William P. Pierskalla in 1967~\cite{Pierskalla1967Q3AP} and, unlike the QAP, the Q3AP is a less studied problem. Indeed, the Q3AP was revisited only this -past years and has recently been used to model some advanced +past year and has recently been used to model some advanced assignment problems such as the symbol-mapping problem encountered in wireless communication systems and described in~\cite{Hahn2008q3ap}. The Q3AP optimization problem can be @@ -1146,7 +1142,7 @@ where \begin{eqnarray} X=(x_{ijl})\in I \cap J \cap L, \label{Q3APConstraints1}\\ - x_{ijl}\in \{0,1\}, \quad i,j,l=0,1,...,n-1. \label{Q3APConstraints2} + x_{ijl}\in \{0,1\}, \quad i,j,l=0,1,...,n-1 \label{Q3APConstraints2} \end{eqnarray} $I$, $J$, and $L$ sets are defined as follows: \begin{displaymath} I=\lbrace X=(x_{ijl}): \sum_{j=0}^{n-1}\sum_{l=0}^{n-1}x_{ijl}=1, \quad @@ -1156,7 +1152,7 @@ i=0,1,...,n-1\rbrace \mathrm{;} \end{displaymath} j=0,1,...,n-1\rbrace \mathrm{;} \end{displaymath} \begin{displaymath} L=\lbrace X=(x_{ijl}): \sum_{i=0}^{n-1}\sum_{j=0}^{n-1}x_{ijl}=1, \quad -l=0,1,...,n-1\rbrace \mathrm{.} \end{displaymath} +l=0,1,...,n-1\rbrace \end{displaymath} % fin------------------------------------------------------------------------------ Other equivalent formulations of the Q3AP can be found in the literature. A particularly useful one is the @@ -1193,12 +1189,12 @@ procedure~\cite{Glover1989TS} starts from an initial feasible solution and tries, at each step, to move to a neighboring solution that minimizes the fitness (for a minimization case). If no such move exists, the neighbor solution that less degrades the -fitness is chosen as a next move. This enables, TS process to +fitness is chosen as a next move. This enables the TS process to escape local optima. However, this strategy may generate cycles, i.e., previous moves can be selected again. To avoid cycles, the TS manages a short-term memory that contains the moves that have been recently performed. A TS\index{Metaheuristics!tabu~search} -template is given by the Algorithm \ref{TS_pseudo_code}.\\ +template is given by Algorithm \ref{TS_pseudo_code}.\\ % % \begin{algorithm} % \label{TS_pseudo_code} @@ -1231,7 +1227,7 @@ template is given by the Algorithm \ref{TS_pseudo_code}.\\ $t = t + 1$\; } -\caption{Tabu search template} +\caption{tabu search template} \label{TS_pseudo_code} \end{algorithm} @@ -1405,7 +1401,7 @@ given number of iterations has been reached. Update the tabu list\; Copy the chosen solution on GPU device memory\; } -\caption{Template of an iterated tabu search on GPU for solving the Q3AP} +\caption{template of an iterated tabu search on GPU for solving the Q3AP} \label{ch8:algoITS} \end{algorithm} @@ -1458,7 +1454,7 @@ each average measurement is shown in small type characters.\\ \small \begin{tabular}{|l|r|r|r|r|r|r|r|r|} \hline \multicolumn{1}{|c|}{Instance }& \multicolumn{1}{|c|}{Optimal}& \multicolumn{1}{|c|}{Average} & \multicolumn{1}{|c|}{Maximal} & \multicolumn{1}{|c|}{Hits} & \multicolumn{1}{|c|}{CPU} & \multicolumn{1}{|c|}{GPU} & \multicolumn{1}{|c|}{Speed-} & \multicolumn{1}{|c|}{ITS} \\ -& \multicolumn{1}{|c|}{/BKV\footnotemark }& \multicolumn{1}{|c|}{value }& \multicolumn{1}{|c|}{value }& & \multicolumn{1}{|c|}{time }& \multicolumn{1}{|c|}{time }& \multicolumn{1}{|c|}{up}& \multicolumn{1}{|c|}{iteration}\\ \hline +& \multicolumn{1}{|c|}{/BKV\footnotemark }& \multicolumn{1}{|c|}{value }& \multicolumn{1}{|c|}{value }& \multicolumn{1}{|c|}{} & \multicolumn{1}{|c|}{time }& \multicolumn{1}{|c|}{time }& \multicolumn{1}{|c|}{up}& \multicolumn{1}{|c|}{iter.}\\ \hline Nug12-d & $580$ & $615.4$ & $744$ & $35$\% & $87.7$ & $2.5$ & $34.7 \times$& $16$ \\ & & \tiny{$41.7$} & && \tiny{$40.9$} & \tiny{$0.9$} & & \tiny{$6.3$} \\ \hline Nug13-d & $1912$ & $1985.4$ & $2100$ & $20$\% & $209.2$ & $3.3$ & $63.5 \times$ & $17$ \\ @@ -1518,7 +1514,7 @@ three-dimensional assignment problem (Q3AP). \\ Implementing parallel metaheuristics\index{Metaheuristics!parallel~metaheuristics} on GPU architectures poses new issues and challenges such as memory -management\index{GPU Challenges!memory~management}, finding +management\index{GPU Challenges!memory~management}; finding efficient mapping strategies between tasks to parallelize; and the GPU threads, thread divergence\index{GPU Challenges!thread~divergence}, and synchronization. Actually, most diff --git a/BookGPU/Chapters/chapter9/figures/classification.pdf b/BookGPU/Chapters/chapter9/figures/classification.pdf index c708e99..a0b78ad 100644 Binary files a/BookGPU/Chapters/chapter9/figures/classification.pdf and b/BookGPU/Chapters/chapter9/figures/classification.pdf differ diff --git a/BookGPU/Chapters/chapter9/figures/paradiseoGPU.pdf b/BookGPU/Chapters/chapter9/figures/paradiseoGPU.pdf index 4e521b3..13de615 100644 Binary files a/BookGPU/Chapters/chapter9/figures/paradiseoGPU.pdf and b/BookGPU/Chapters/chapter9/figures/paradiseoGPU.pdf differ