

\subsection{Phylogenetic tree based on NCBI core 58}
\label{philoTree}

\begin{center}
\includegraphics[scale=0.4]{phylo11}
\end{center}


\subsection{Example}

\begin{table}[h]
\begin{tabular}{cccccccc}
\hline
             &    &          & \multicolumn{3}{c}{Nb. of Genes} &           &            \\
Genome       & Th & GAM      & NCBI     & DOGMA     & Common    & NCBI (\%) & DOGMA (\%) \\ \hline
NC\_000925.1 & 60 & osneedle & 209      & 171       & 125       & 59.81     & 73.1       \\
NC\_000927.1 & 60 & osneedle & 147      & 130       & 89        & 60.54     & 68.46      \\
NC\_001319.1 & 60 & osneedle & 89       & 126       & 74        & 83.15     & 58.73      \\
NC\_001568.1 & 60 & osneedle & 21       & 51        & 20        & 95.24     & 39.22      \\
NC\_001603.2 & 60 & osneedle & 67       & 59        & 33        & 49.25     & 55.93      \\
NC\_001666.2 & 60 & osneedle & 105      & 118       & 74        & 70.48     & 62.71      \\
NC\_001713.1 & 60 & osneedle & 138      & 155       & 119       & 86.23     & 76.77      \\
NC\_001840.1 & 60 & osneedle & 197      & 106       & 72        & 36.55     & 67.92      \\
NC\_002186.1 & 60 & osneedle & 105      & 141       & 96        & 91.43     & 68.09      \\
NC\_003386.1 & 60 & osneedle & 95       & 124       & 77        & 81.05     & 62.1       \\
NC\_004543.1 & 60 & osneedle & 88       & 115       & 75        & 85.23     & 65.22      \\
NC\_005086.1 & 60 & osneedle & 79       & 119       & 74        & 93.67     & 62.18      \\
NC\_005087.1 & 60 & osneedle & 85       & 122       & 78        & 91.76     & 63.93      \\
NC\_005353.1 & 60 & osneedle & 66       & 73        & 46        & 69.7      & 63.01      \\
NC\_006050.1 & 60 & osneedle & 79       & 120       & 77        & 97.47     & 64.17      \\
NC\_006137.1 & 60 & osneedle & 203      & 227       & 188       & 92.61     & 82.82      \\
NC\_006290.1 & 60 & osneedle & 79       & 120       & 77        & 97.47     & 64.17      \\
NC\_006861.1 & 60 & osneedle & 86       & 124       & 84        & 97.67     & 67.74      \\
NC\_007288.1 & 60 & osneedle & 119      & 91        & 61        & 51.26     & 67.03      \\
NC\_007578.1 & 60 & osneedle & 78       & 118       & 76        & 97.44     & 64.41      \\
NC\_007898.3 & 60 & osneedle & 80       & 120       & 78        & 97.5      & 65         \\
NC\_007957.1 & 60 & osneedle & 79       & 120       & 77        & 97.47     & 64.17      \\
NC\_007977.1 & 60 & osneedle & 79       & 118       & 77        & 97.47     & 65.25      \\
NC\_008097.1 & 60 & osneedle & 104      & 109       & 69        & 66.35     & 63.3       \\
NC\_008099.1 & 60 & osneedle & 83       & 89        & 57        & 68.67     & 64.04      \\
NC\_008114.1 & 60 & osneedle & 103      & 81        & 52        & 50.49     & 64.2       \\
NC\_008289.1 & 60 & osneedle & 60       & 68        & 42        & 70        & 61.76      \\
NC\_008325.1 & 60 & osneedle & 79       & 119       & 77        & 97.47     & 64.71      \\
NC\_008336.1 & 60 & osneedle & 79       & 121       & 77        & 97.47     & 63.64      \\
NC\_008359.1 & 60 & osneedle & 78       & 119       & 76        & 97.44     & 63.87      \\
NC\_008372.1 & 60 & osneedle & 79       & 73        & 45        & 56.96     & 61.64      \\
NC\_008407.1 & 60 & osneedle & 78       & 116       & 73        & 93.59     & 62.93      \\
NC\_008456.1 & 60 & osneedle & 79       & 121       & 77        & 97.47     & 63.64      \\
NC\_008457.1 & 60 & osneedle & 79       & 120       & 77        & 97.47     & 64.17      \\
NC\_008535.1 & 60 & osneedle & 79       & 121       & 77        & 97.47     & 63.64      \\
NC\_008588.1 & 60 & osneedle & 131      & 160       & 129       & 98.47     & 80.62      \\
NC\_008796.1 & 60 & osneedle & 78       & 119       & 75        & 96.15     & 63.03      \\
NC\_008822.1 & 60 & osneedle & 113      & 131       & 91        & 80.53     & 69.47      \\
NC\_008829.1 & 60 & osneedle & 85       & 119       & 79        & 92.94     & 66.39      \\
NC\_009143.1 & 60 & osneedle & 91       & 117       & 73        & 80.22     & 62.39      \\
NC\_009598.1 & 60 & osneedle & 79       & 121       & 77        & 97.47     & 63.64      \\
NC\_009599.1 & 60 & osneedle & 79       & 119       & 77        & 97.47     & 64.71      \\
NC\_009600.1 & 60 & osneedle & 79       & 121       & 77        & 97.47     & 63.64      \\
NC\_009601.1 & 60 & osneedle & 78       & 119       & 76        & 97.44     & 63.87      \\
NC\_009618.1 & 60 & osneedle & 118      & 125       & 80        & 67.8      & 64         \\
NC\_009765.1 & 60 & osneedle & 59       & 86        & 52        & 88.14     & 60.47      \\
NC\_009808.1 & 60 & osneedle & 78       & 118       & 75        & 96.15     & 63.56      \\
NC\_010361.1 & 60 & osneedle & 78       & 120       & 76        & 97.44     & 63.33      \\
NC\_010433.1 & 60 & osneedle & 78       & 118       & 76        & 97.44     & 64.41      \\
NC\_010442.1 & 60 & osneedle & 74       & 112       & 66        & 89.19     & 58.93      \\
NC\_010772.1 & 60 & osneedle & 143      & 112       & 80        & 55.94     & 71.43      \\
NC\_011031.1 & 60 & osneedle & 83       & 78        & 46        & 55.42     & 58.97      \\
NC\_011600.1 & 60 & osneedle & 139      & 108       & 74        & 53.24     & 68.52      \\
NC\_011942.1 & 60 & osneedle & 63       & 88        & 46        & 73.02     & 52.27      \\
NC\_012097.1 & 60 & osneedle & 68       & 71        & 44        & 64.71     & 61.97      \\
NC\_012099.1 & 60 & osneedle & 87       & 95        & 64        & 73.56     & 67.37      \\
NC\_012568.1 & 60 & osneedle & 27       & 29        & 0         & 0         & 0          \\
NC\_012903.1 & 60 & osneedle & 110      & 98        & 64        & 58.18     & 65.31      \\
NC\_013707.2 & 60 & osneedle & 78       & 121       & 75        & 96.15     & 61.98      \\
NC\_013823.1 & 60 & osneedle & 79       & 121       & 77        & 97.47     & 63.64      \\
NC\_013991.2 & 60 & osneedle & 80       & 121       & 78        & 97.5      & 64.46      \\
NC\_014267.1 & 60 & osneedle & 139      & 167       & 136       & 97.84     & 81.44      \\
NC\_014287.1 & 60 & osneedle & 127      & 156       & 125       & 98.43     & 80.13      \\
NC\_014346.1 & 60 & osneedle & 74       & 73        & 43        & 58.11     & 58.9       \\
NC\_014348.1 & 60 & osneedle & 84       & 117       & 77        & 91.67     & 65.81      \\
NC\_014570.1 & 60 & osneedle & 69       & 120       & 67        & 97.1      & 55.83      \\
NC\_014674.1 & 60 & osneedle & 77       & 120       & 75        & 97.4      & 62.5       \\
NC\_014675.1 & 60 & osneedle & 82       & 115       & 74        & 90.24     & 64.35      \\
NC\_014676.2 & 60 & osneedle & 76       & 119       & 75        & 98.68     & 63.03      \\
NC\_014699.1 & 60 & osneedle & 84       & 115       & 73        & 86.9      & 63.48      \\
NC\_014808.1 & 60 & osneedle & 142      & 152       & 124       & 87.32     & 81.58      \\
NC\_015403.1 & 60 & osneedle & 134      & 154       & 122       & 91.04     & 79.22      \\
NC\_015645.1 & 60 & osneedle & 77       & 74        & 45        & 58.44     & 60.81      \\
NC\_015830.1 & 60 & osneedle & 77       & 118       & 75        & 97.4      & 63.56      \\
NC\_015899.1 & 60 & osneedle & 77       & 120       & 76        & 98.7      & 63.33      \\
NC\_016058.1 & 60 & osneedle & 71       & 115       & 70        & 98.59     & 60.87      \\
NC\_016063.1 & 60 & osneedle & 82       & 120       & 76        & 92.68     & 63.33      \\
NC\_016065.1 & 60 & osneedle & 83       & 117       & 75        & 90.36     & 64.1       \\
NC\_016068.1 & 60 & osneedle & 103      & 120       & 77        & 74.76     & 64.17      \\
NC\_016069.1 & 60 & osneedle & 69       & 116       & 69        & 100       & 59.48      \\
NC\_016433.2 & 60 & osneedle & 80       & 120       & 78        & 97.5      & 65         \\
NC\_016468.1 & 60 & osneedle & 78       & 120       & 77        & 98.72     & 64.17      \\
NC\_016670.1 & 60 & osneedle & 77       & 118       & 75        & 97.4      & 63.56      \\
NC\_016727.1 & 60 & osneedle & 77       & 119       & 75        & 97.4      & 63.03      \\
NC\_016731.1 & 60 & osneedle & 128      & 149       & 116       & 90.62     & 77.85      \\
NC\_016732.1 & 60 & osneedle & 79       & 71        & 45        & 56.96     & 63.38      \\
NC\_016733.1 & 60 & osneedle & 79       & 82        & 52        & 65.82     & 63.41      \\
NC\_016734.1 & 60 & osneedle & 79       & 117       & 77        & 97.47     & 65.81      \\
NC\_016735.1 & 60 & osneedle & 139      & 96        & 65        & 46.76     & 67.71      \\
NC\_016736.1 & 60 & osneedle & 78       & 120       & 76        & 97.44     & 63.33      \\
NC\_016753.1 & 60 & osneedle & 79       & 121       & 77        & 97.47     & 63.64      \\
NC\_016986.1 & 60 & osneedle & 82       & 123       & 80        & 97.56     & 65.04      \\
NC\_017006.1 & 60 & osneedle & 87       & 119       & 73        & 83.91     & 61.34      \\
NC\_017609.1 & 60 & osneedle & 67       & 115       & 65        & 97.01     & 56.52      \\
NC\_018357.1 & 60 & osneedle & 78       & 121       & 76        & 97.44     & 62.81      \\
NC\_018523.1 & 60 & osneedle & 139      & 107       & 74        & 53.24     & 69.16      \\
NC\_019601.1 & 60 & osneedle & 78       & 120       & 76        & 97.44     & 63.33      \\
NC\_020014.1 & 60 & osneedle & 118      & 86        & 51        & 43.22     & 59.3       \\
NC\_020018.1 & 60 & osneedle & 62       & 67        & 42        & 67.74     & 62.69      \\ \hline
\end{tabular}
\end{table}
