adding the directory of paper2

[chloroplast13.git] / main.tex

diff --git a/main.tex b/main.tex
index e7234bb64848f46c44060cbb7a43e17c69a41cd3..fd5f236d437af08541be86a10b7458d0feeffc2b 100755 (executable)
--- a/main.tex
+++ b/main.tex
@@ -4,78 +4,68 @@
 \usepackage{graphicx}
 \usepackage{url}
 \usepackage{cite}
 \usepackage{graphicx}
 \usepackage{url}
 \usepackage{cite}

+\usepackage{algorithm}
+\usepackage{algorithmic}
+\usepackage{pdflscape}
+\usepackage{authblk}
+\usepackage[T1]{fontenc}
+\usepackage{multirow,longtable}
+\usepackage{amsmath,mathtools}
+\usepackage{amssymb}
+\usepackage[standard]{ntheorem}
+\usepackage{stmaryrd}
+\usepackage[utf8]{inputenc}
+\usepackage{tikz}
+\usetikzlibrary{shapes,arrows}

 
 % correct bad hyphenation here
 \hyphenation{op-tical net-works semi-conduc-tor}
 
 
 % correct bad hyphenation here
 \hyphenation{op-tical net-works semi-conduc-tor}
 

- 
+
+\title{Finding the Core-Genes of Plant Species Chloroplast}
+\author[1]{Bassam AlKindy} %\footnote{email: bassam.al-kindy@univ-fcomte.fr}
+\author[1]{Jean-Fran\c{c}ois Couchot} 
+\author[1]{Christophe Guyeux} 
+\author[2]{Arnaud Mouly}
+\author[1]{Michel Salomon}
+\author[1]{Jacques Bahi}
+\affil[1]{FEMTO-ST Institute, UMR 6174 CNRS, Computer Science Department DISC, Universit\'{e} de Franche-Comt\'{e}, France}
+\affil[2]{Lab. Chrono-Environnement, UMR 6249 CNRS, Universit\'{e} de Franche-Comt\'{e}, France}
+%{\small \it Authors in alphabetic order}
+
+\renewcommand\Authands{ and }

 \begin{document}
 \begin{document}

-\title{Finding the core-genes of Chloroplast Species}
-
-
-\author{
-Bassam Al-Kindy,
-Jean-Fran\c{c}ois Couchot,  
-Christophe Guyeux,
-and Michel Salomon*\\
-  FEMTO-ST Institute, UMR 6174 CNRS\\
-  Computer Science Laboratory DISC,
-  University of Franche-Comt\'{e},
-  Besan\c con, France.\\
- $*:$ Authors in alphabetic order.\\
-}
+

 \newcommand{\JFC}[1]{\begin{color}{green}\textit{}\end{color}}
 \newcommand{\CG}[1]{\begin{color}{blue}\textit{}\end{color}}
 % make the title area
 \newcommand{\JFC}[1]{\begin{color}{green}\textit{}\end{color}}
 \newcommand{\CG}[1]{\begin{color}{blue}\textit{}\end{color}}
 % make the title area

-\maketitle
-
-
-
-
-%IEEEtran, journal, \LaTeX, paper, template.

 
 \maketitle
 
 
 \maketitle
 

-\begin{abstract}
-\end{abstract}
-
-
-
-
-
-
-
+%IEEEtran, journal, \LaTeX, paper, template.
+\input{abstract}

 
 \section{Introduction}\label{sec:intro}
 
 \section{Introduction}\label{sec:intro}

-%\input{intro.tex}
-
+\input{intro.tex}

 
 

-\section{Similarity-based Approach }
-%input 
+\section{Similarity-based approach}

 % Main author : jfc
 \input{classEquiv}
 
 % Main author : jfc
 \input{classEquiv}
 

-
-
-\section{Annotated-based Approach}
+\section{Annotation-based approaches}

 % Main author : bassam
 % Main author : bassam

-
-
-
-
-
+\input{annotated}

 
 % \section{Second Stage: to Find Closed Genomes}
 % \input{closedgenomes}
 
 % \section{Second Stage: to Find Closed Genomes}
 % \input{closedgenomes}

-
-
+\section{Discussion}
+\input{discussion.tex}

 \section{Conclusion}\label{sec:concl}
 \section{Conclusion}\label{sec:concl}

-
+\input{conclusion}

 
 \bibliographystyle{plain}
 
 \bibliographystyle{plain}

-\bibliography{biblio}
-

 
 

+\bibliography{biblio}

 
 \end{document}
 
 
 \end{document}