X-Git-Url: https://bilbo.iut-bm.univ-fcomte.fr/and/gitweb/chloroplast13.git/blobdiff_plain/7c7d06eb39defd8bcc5eebe8804d2b547184a176..337a82cd19a074b2bb9c3a50d71ec0d31587e768:/abstract.tex?ds=inline

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-DNA analysis techniques have received  a lot of attention  these last 
-years,  because they play an  important role  in understanding 
-genomes evolution over time, and in phylogenetic and genetic analyses. Various models 
-of genomes evolution  are based on the analysis  of DNA sequences, SNPs, 
-mutations, and so on. We have recently investigated the use of
-core (\emph{i.e.}, common  genes) and pan genomes  to infer evolutionary information 
-on a collection of 107 chloroplasts. In particular,
-we have regarded methods to  build a genes content evolutionary tree  using  
-distances to core  genome. However,  
-the production of reliable core and pan genomes is not an easy task,
-due to error annotations of the NCBI. The presentation will then
-consist in various compared approaches to construct such a tree using
-fully annotated genomes by NCBI and Dogma, followed by a gene quality 
-control among the  common genes. We will finally explain how, by comparing 
-sequences from Dogma with NCBI contents, we achieved to identify the 
-genes that play a key role in the dynamics of genomes evolution. \\
+\begin{abstract}
+DNA analysis  techniques have received  a lot of attention  these last
+years, because  they play an  important role in  understanding genomes
+evolution over time, and in phylogenetic and genetic analyses. Various
+models  of  genomes  evolution  are  based  on  the  analysis  of  DNA
+sequences, SNPs,  mutations, and so on. We  have recently investigated
+the use of  core (\emph{i.e.}, common genes) and  pan genomes to infer
+evolutionary  information  on  a  collection of  99~chloroplasts.   In
+particular,  we  have  regarded  methods  to  build  a  genes  content
+evolutionary  tree  using  distances  to core  genome.   However,  the
+production of reliable  core and pan genomes is not  an easy task, due
+to error  annotations. We will  first compare different  approaches to
+construct such a tree using fully annoted genomes provided by NCBI and
+Dogma, followed by a gene quality control among the common genes. Then
+we  will explain  how, by  comparing  sequences from  Dogma with  NCBI
+contents, we  achieved to identify the  genes that play a  key role in
+the dynamics of genomes evolution.
 
 \textbf{Keywords:} genome evolution, phylogenetic tree, core genes, evolution tree, genome annotation  
-\end{abstract}
\ No newline at end of file
+\end{abstract}