X-Git-Url: https://bilbo.iut-bm.univ-fcomte.fr/and/gitweb/chloroplast13.git/blobdiff_plain/9fa4c949043a414e7632a542fe99e429060e6bf0..08900e952bee0d3f05497c376407fec03a531919:/biblio.bib

diff --git a/biblio.bib b/biblio.bib
index 92db33a..d5aaff6 100644
--- a/biblio.bib
+++ b/biblio.bib
@@ -53,6 +53,18 @@ DOI={10.1089/cmb.2010.0092}
   year={2004},
   publisher={Cold Spring Harbor Lab}
 }
+
+@article{chapman2000biopython,
+  title={Biopython: Python tools for computational biology},
+  author={Chapman, Brad and Chang, Jeffrey},
+  journal={ACM SIGBIO Newsletter},
+  volume={20},
+  number={2},
+  pages={15--19},
+  year={2000},
+  publisher={ACM}
+}
+
 @incollection{FI09,
 year={2009},
 isbn={978-3-642-04743-5},
@@ -91,6 +103,32 @@ pages={1-12}
     number = {12},
     doi = {10.1371/journal.pone.0052841}
 }        
+
+@article{Sayers01012011,
+author = {Sayers, Eric W. and Barrett, Tanya and Benson, Dennis A. and Bolton, Evan and Bryant, Stephen H. and Canese, Kathi and Chetvernin, Vyacheslav and Church, Deanna M. and DiCuccio, Michael and Federhen, Scott and Feolo, Michael and Fingerman, Ian M. and Geer, Lewis Y. and Helmberg, Wolfgang and Kapustin, Yuri and Landsman, David and Lipman, David J. and Lu, Zhiyong and Madden, Thomas L. and Madej, Tom and Maglott, Donna R. and Marchler-Bauer, Aron and Miller, Vadim and Mizrachi, Ilene and Ostell, James and Panchenko, Anna and Phan, Lon and Pruitt, Kim D. and Schuler, Gregory D. and Sequeira, Edwin and Sherry, Stephen T. and Shumway, Martin and Sirotkin, Karl and Slotta, Douglas and Souvorov, Alexandre and Starchenko, Grigory and Tatusova, Tatiana A. and Wagner, Lukas and Wang, Yanli and Wilbur, W. John and Yaschenko, Eugene and Ye, Jian}, 
+title = {Database resources of the National Center for Biotechnology Information},
+volume = {39}, 
+number = {suppl 1}, 
+pages = {D38-D51}, 
+year = {2011}, 
+doi = {10.1093/nar/gkq1172}, 
+abstract ={In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through the NCBI Web site. NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central (PMC), Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Primer-BLAST, COBALT, Electronic PCR, OrfFinder, Splign, ProSplign, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, dbVar, Epigenomics, Cancer Chromosomes, Entrez Genomes and related tools, the Map Viewer, Model Maker, Evidence Viewer, Trace Archive, Sequence Read Archive, Retroviral Genotyping Tools, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus (GEO), Entrez Probe, GENSAT, Online Mendelian Inheritance in Man (OMIM), Online Mendelian Inheritance in Animals (OMIA), the Molecular Modeling Database (MMDB), the Conserved Domain Database (CDD), the Conserved Domain Architecture Retrieval Tool (CDART), IBIS, Biosystems, Peptidome, OMSSA, Protein Clusters and the PubChem suite of small molecule databases. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. All of these resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov.}, 
+URL = {http://nar.oxfordjournals.org/content/39/suppl_1/D38.abstract}, 
+eprint = {http://nar.oxfordjournals.org/content/39/suppl_1/D38.full.pdf+html}, 
+journal = {Nucleic Acids Research} 
+}
+
+@article{zafar2002coregenes,
+  title={CoreGenes: A computational tool for identifying and cataloging},
+  author={Zafar, Nikhat and Mazumder, Raja and Seto, Donald},
+  journal={BMC bioinformatics},
+  volume={3},
+  number={1},
+  pages={12},
+  year={2002},
+  publisher={BioMed Central Ltd}
+}
+
 @Article{17623808,
 AUTHOR = {Gomez-Valero, Laura and Rocha, Eduardo P C and Latorre, Amparo and Silva, Francisco J},
 TITLE = {Reconstructing the ancestor of Mycobacterium leprae: the dynamics of gene loss and genome reduction.},
@@ -186,3 +224,20 @@ URL={http://www.biosci.utexas.edu/ib/faculty/jansen/pubs/Wyman%20et%20al.%202004
     number = {7},
     doi = {10.1371/journal.pone.0006291}
 }        
+
+@article{altschul1990basic,
+  title={Basic local alignment search tool},
+  author={Altschul, Stephen F and Gish, Warren and Miller, Webb and Myers, Eugene W and Lipman, David J},
+  journal={Journal of molecular biology},
+  volume={215},
+  number={3},
+  pages={403--410},
+  year={1990},
+  publisher={Elsevier}
+}
+
+@article{geneVision,
+  title={DNASTAR- GenVision Software for Genomic Visualizations},
+  author={DNASTAR},
+  url = {http://www.dnastar.com/products/genvision.php} 
+}
\ No newline at end of file