<html><head><meta name="color-scheme" content="light dark"></head><body><pre style="word-wrap: break-word; white-space: pre-wrap;">X-Git-Url: https://bilbo.iut-bm.univ-fcomte.fr/and/gitweb/chloroplast13.git/blobdiff_plain/c3bc9b78abb7c8a25cd497b8d4b80f0ba8b8edb3..547209d5b59ac06b961d32253f6de68b69701c8c:/population_Table.tex?ds=sidebyside

diff --git a/population_Table.tex b/population_Table.tex
index 6071e66..7f1536c 100644
--- a/population_Table.tex
+++ b/population_Table.tex
@@ -1,117 +1,166 @@
-\footnotesize 
-\setlength\LTleft{-30pt}            
-\setlength\LTright{-30pt}           
-\begin{longtable}{@{\extracolsep{\fill}}llllllllll@{}}
-\caption[NCBI Genomes Families]{List of family groups of Chloroplast Genomes from NCBI\label{Tab2}}\\
-% Heading
-	\hline\hline
-	{\textbf{Category}} &amp; {\textbf{Counts}} &amp; {\textbf{Accession No}} &amp; {\textbf{Scientific Name}} \\ 
-	\hline
+\begin{center}  
+  \begin{table}
+    \tiny
+    \caption[NCBI Genomes Families]{List of chloroplast genomes of photosynthetic Eucaryotes lineages from NCBI\label{Tab2}}
+    \begin{minipage}{0.50\textwidth}
+      \setlength{\tabcolsep}{4pt}
+      \begin{tabular}{|p{0.1cm}|p{0.1cm}|p{1.3cm}|p{3cm}|}
+      \hline
+      {{F.}}&amp;{{\#}} &amp; {{Acc. No}} &amp; {{Scientific Name}} \\ 
+      \hline
 	%Entering First line
-	  &amp; &amp; NC\_001713.1 &amp; Odontella sinensis \\ 
-	  &amp; &amp; NC\_008588.1 &amp; Phaeodactylum tricornutum \\ 
-	  &amp; &amp; NC\_010772.1 &amp; Heterosigma akashiwo \\ 
-	  &amp; &amp; NC\_011600.1 &amp; Vaucheria litorea \\ 
-	  &amp; &amp; NC\_012903.1 &amp; Aureoumbra lagunensis \\ 
-	  Brown Algae &amp; 11 &amp; NC\_014808.1 &amp; Thalassiosira oceanica \\ 
-	  &amp; &amp; NC\_015403.1 &amp; Fistulifera sp \\ 
-	  &amp; &amp; NC\_016731.1 &amp; Synedra acus \\ 
-	  &amp; &amp; NC\_016735.1 &amp; Fucus vesiculosus \\ 
-	  &amp; &amp; NC\_018523.1 &amp; Saccharina japonica \\ 
-	  &amp; &amp; NC\_020014.1 &amp; Nannochloropsis gadtina \\ [1ex]
-	%Entering second group
-	  &amp; &amp; NC\_000925.1 &amp; Porphyra purpurea \\ 
-	  Red Algae &amp; 3 &amp; NC\_001840.1 &amp; Cyanidium caldarium \\ 
-	  &amp; &amp; NC\_006137.1 &amp; Gracilaria tenuistipitata \\ [1ex]
-	 %Entering third group
-	  &amp; &amp; NC\_000927.1 &amp; Nephroselmis olivacea \\ 
-	  &amp; &amp; NC\_002186.1 &amp; Mesotigma viride \\ 
-	  &amp; &amp; NC\_005353.1 &amp; Chlamydomonas reinhardtii \\ 
-	  &amp; &amp; NC\_008097.1 &amp; Chara vulgaris \\ 
-	  &amp; &amp; NC\_008099.1 &amp; Oltmannsiellopsis viridis \\ 
-	  &amp; &amp; NC\_008114.1 &amp; Pseudoclonium akinetum \\ 
-	  &amp; &amp; NC\_008289.1 &amp; Ostreococcus tauri \\ 
-	  &amp; &amp; NC\_008372.1 &amp; Stigeoclonium helveticum \\ 
-	  Green Algae &amp; 17 &amp; NC\_008822.1 &amp; Chlorokybus atmophyticus \\ 
-	  &amp; &amp; NC\_011031.1 &amp; Oedogonium cardiacum \\ 
-	  &amp; &amp; NC\_012097.1 &amp; Pycnococcus provaseolii \\ 
-	  &amp; &amp; NC\_012099.1 &amp; Pyramimonas parkeae \\ 
-	  &amp; &amp; NC\_012568.1 &amp; Micromonas pusilla \\ 
-	  &amp; &amp; NC\_014346.1 &amp; Floydiella terrestris \\ 
-	  &amp; &amp; NC\_015645.1 &amp; Schizomeris leibleinii \\ 
-	  &amp; &amp; NC\_016732.1 &amp; Dunaliella salina \\ 
-	  &amp; &amp; NC\_016733.1 &amp; Pedinomonas minor \\ [1ex] 
-	 %Entering fourth group
-	  &amp; &amp; NC\_001319.1 &amp; Marchantia polymorpha \\ 
-	  Brypoytes &amp; 3 &amp; NC\_004543.1 &amp; Anthoceros formosae \\ 
-	  &amp; &amp; NC\_005087.1 &amp; Physcomitrella patens \\ [1ex]
-	 %Entering fifth group
-	  &amp; &amp; NC\_014267.1 &amp; Kryptoperidinium foliaceum \\ 
-	  Dinoflagellates &amp; 2
-	  	&amp; NC\_014287.1 &amp; Durinskia baltica \\ [1ex]
-	 %Entering sixth group
-	  &amp; &amp; NC\_001603.2 &amp; Euglena gracilis \\ 
-	  Euglena &amp; 2 &amp; NC\_020018.1 &amp; Monomorphina aenigmatica \\ [1ex]
-	 %Entering seventh group
-	  &amp; &amp; NC\_003386.1 &amp; Psilotum nudum \\ 
-	  &amp; &amp; NC\_008829.1 &amp; Angiopteris evecta \\
-	  Fern &amp; 5 &amp; NC\_014348.1 &amp; Pteridium aquilinum \\ 
-	  &amp; &amp; NC\_014699.1 &amp; Equisetum arvense \\ 
-	  &amp; &amp; NC\_017006.1 &amp; Mankyua chejuensis \\ [1ex]
-	  % Entering eighth group
-	  &amp; &amp; NC\_007898.3 &amp; Solanum lyopersicum \\
-	  &amp; &amp; NC\_001568.1 &amp; Epifagus virginiana \\ 
-	  &amp; &amp; NC\_001666.2 &amp; Zea Mays \\ 
-	  &amp; &amp; NC\_005086.1 &amp; Amborella trichopoda \\ 
-	  &amp; &amp; NC\_006050.1 &amp; Nymphaea alba \\ 
-	  &amp; &amp; NC\_006290.1 &amp; Panax ginseng \\ 
-	  &amp; &amp; NC\_007578.1 &amp; Lactuca sativa \\ 
-	  &amp; &amp; NC\_007957.1 &amp; vitis vinifera \\ 
-	  &amp; &amp; NC\_007977.1 &amp; Helianthus annuus \\ 
-	  &amp; &amp; NC\_008325.1 &amp; Daucus carota \\ 
-	  &amp; &amp; NC\_008336.1 &amp; Nandina domestica \\ 
-	  &amp; &amp; NC\_008359.1 &amp; Morus indica \\ 
-	  &amp; &amp; NC\_008407.1 &amp; Jasminum nudiflorum \\ 
-	  &amp; &amp; NC\_008456.1 &amp; Drimys granadensis \\ 
-	  &amp; &amp; NC\_008457.1 &amp; Piper cenocladum \\ 
-	  &amp; &amp; NC\_009601.1 &amp; Dioscorea elephantipes \\ 
-	  &amp; &amp; NC\_009765.1 &amp; Cuscuta gronovii \\ 
-	  &amp; &amp; NC\_009808.1 &amp; Ipomea purpurea \\ 
-	 Angiosperms &amp; 45 &amp; NC\_010361.1 &amp; Oenothera biennis \\ 
-	  &amp; &amp; NC\_010433.1 &amp; Manihot esculenta \\ 
-	  &amp; &amp; NC\_010442.1 &amp; Trachelium caeruleum \\ 
-	  &amp; &amp; NC\_013707.2 &amp; Olea europea \\ 
-	  &amp; &amp; NC\_013823.1 &amp; Typha latifolia \\ 
-	  &amp; &amp; NC\_014570.1 &amp; Eucalyptus \\ 
-	  &amp; &amp; NC\_014674.1 &amp; Castanea mollissima \\ 
-	  &amp; &amp; NC\_014676.2 &amp; Theobroma cacao \\ 
-	  &amp; &amp; NC\_015830.1 &amp; Bambusa emeiensis \\ 
-	  &amp; &amp; NC\_015899.1 &amp; Wolffia australiana \\ 
-	  &amp; &amp; NC\_016433.2 &amp; Sesamum indicum \\ 
-	  &amp; &amp; NC\_016468.1 &amp; Boea hygrometrica \\ 
-	  &amp; &amp; NC\_016670.1 &amp; Gossypium darwinii \\ 
-	  &amp; &amp; NC\_016727.1 &amp; Silene vulgaris \\ 
-	  &amp; &amp; NC\_016734.1 &amp; Brassica napus \\ 
-	  &amp; &amp; NC\_016736.1 &amp; Ricinus communis \\ 
-	  &amp; &amp; NC\_016753.1 &amp; Colocasia esculenta \\ 
-	  &amp; &amp; NC\_017609.1 &amp; Phalaenopsis equestris \\ 
-	  &amp; &amp; NC\_018357.1 &amp; Magnolia denudata \\ 
-	  &amp; &amp; NC\_019601.1 &amp; Fragaria chiloensis \\ 
-	  &amp; &amp; NC\_008796.1 &amp; Ranunculus macranthus \\ 
-	  &amp; &amp; NC\_013991.2 &amp; Phoenix dactylifera \\ 
-	  &amp; &amp; NC\_016068.1 &amp; Nicotiana undulata \\ [1ex]
-	  %Entering ninth group
-	  &amp; &amp; NC\_009618.1 &amp; Cycas taitungensis \\ 
-	  &amp; &amp; NC\_011942.1 &amp; Gnetum parvifolium \\ 
-	  &amp; &amp; NC\_016058.1 &amp; Larix decidua \\ 
-	  Gymnosperms &amp; 7 &amp; NC\_016063.1 &amp; Cephalotaxus wilsoniana \\ 
-	  &amp; &amp; NC\_016065.1 &amp; Taiwania cryptomerioides \\ 
-	  &amp; &amp; NC\_016069.1 &amp; Picea morrisonicola \\ 
-	  &amp; &amp; NC\_016986.1 &amp; Gingko biloba \\ [1ex]
-	  %Entering tenth group
-	  Haptophytes &amp; 1 &amp; NC\_007288.1 &amp; Emiliana huxleyi\\ [1ex]
-	  %Entering eleventh group
-	  Lycopodiophyta &amp; 2 &amp; NC\_014675.1 &amp; Isoetes flaccida \\
-	  &amp; &amp; NC\_006861.1 &amp; Huperzia lucidula \\
-	\hline
-\end{longtable}
\ No newline at end of file
+      \parbox[t]{1mm}{\multirow{11}{*}{\rotatebox[origin=c]{90}{Brown Algae}}} &amp;\multirow{11}{*}{11}  &amp; NC\_001713.1 &amp; Odontella sinensis \\ 
+      &amp; &amp; NC\_008588.1 &amp; Phaeodactylum tricornutum \\ 
+      &amp; &amp; NC\_010772.1 &amp; Heterosigma akashiwo \\ 
+      &amp; &amp; NC\_011600.1 &amp; Vaucheria litorea \\ 
+      &amp; &amp; NC\_012903.1 &amp; Aureoumbra lagunensis \\ 
+      &amp;  &amp; NC\_014808.1 &amp; Thalassiosira oceanica \\ 
+      &amp; &amp; NC\_015403.1 &amp; Fistulifera sp \\ 
+      &amp; &amp; NC\_016731.1 &amp; Synedra acus \\ 
+      &amp; &amp; NC\_016735.1 &amp; Fucus vesiculosus \\ 
+      &amp; &amp; NC\_018523.1 &amp; Saccharina japonica \\ 
+      &amp; &amp; NC\_020014.1 &amp; Nannochloropsis gadtina \\ 
+      \hline
+      % Entering second group
+      \parbox[t]{1mm}{\multirow{3}{*}{\rotatebox[origin=c]{90}{F1}}} &amp;
+      \multirow{3}{*}{3} &amp; NC\_000925.1 &amp; Porphyra purpurea \\ 
+       &amp;  &amp; NC\_001840.1 &amp; Cyanidium caldarium \\ 
+      &amp; &amp; NC\_006137.1 &amp; Gracilaria tenuistipitata \\ 
+      \hline
+      % Entering third group
+      \parbox[t]{1mm}{\multirow{17}{*}{\rotatebox[origin=c]{90}{Green Algae}}} &amp;
+      \multirow{17}{*}{17} &amp; NC\_000927.1 &amp; Nephroselmis olivacea \\ 
+      &amp; &amp; NC\_002186.1 &amp; Mesotigma viride \\ 
+      &amp; &amp; NC\_005353.1 &amp; Chlamydomonas reinhardtii \\ 
+      &amp; &amp; NC\_008097.1 &amp; Chara vulgaris \\ 
+      &amp; &amp; NC\_008099.1 &amp; Oltmannsiellopsis viridis \\ 
+      &amp; &amp; NC\_008114.1 &amp; Pseudoclonium akinetum \\ 
+      &amp; &amp; NC\_008289.1 &amp; Ostreococcus tauri \\ 
+      &amp; &amp; NC\_008372.1 &amp; Stigeoclonium helveticum \\ 
+      &amp; &amp; NC\_008822.1 &amp; Chlorokybus atmophyticus \\ 
+      &amp; &amp; NC\_011031.1 &amp; Oedogonium cardiacum \\ 
+      &amp; &amp; NC\_012097.1 &amp; Pycnococcus provaseolii \\ 
+      &amp; &amp; NC\_012099.1 &amp; Pyramimonas parkeae \\ 
+      &amp; &amp; NC\_012568.1 &amp; Micromonas pusilla \\ 
+      &amp; &amp; NC\_014346.1 &amp; Floydiella terrestris \\ 
+      &amp; &amp; NC\_015645.1 &amp; Schizomeris leibleinii \\ 
+      &amp; &amp; NC\_016732.1 &amp; Dunaliella salina \\ 
+      &amp; &amp; NC\_016733.1 &amp; Pedinomonas minor \\ % 
+      \hline
+      % Entering fourth group
+      \parbox[t]{1mm}{\multirow{3}{*}{\rotatebox[origin=c]{90}{F2}}} &amp;
+      \multirow{3}{*}{3} &amp; NC\_001319.1 &amp; Marchantia polymorpha \\ 
+       &amp;  &amp; NC\_004543.1 &amp; Anthoceros formosae \\ 
+      &amp; &amp; NC\_005087.1 &amp; Physcomitrella patens \\ %
+      \hline
+      % Entering fifth group
+      \parbox[t]{1mm}{\multirow{2}{*}{\rotatebox[origin=c]{90}{F3}}} &amp;
+      \multirow{2}{*}{2} &amp; NC\_014267.1 &amp; Kryptoperidinium foliaceum \\ 
+      &amp; 
+      &amp; NC\_014287.1 &amp; Durinskia baltica \\ 
+      \hline
+
+      % Entering sixth group
+      \parbox[t]{1mm}{\multirow{2}{*}{\rotatebox[origin=c]{90}{F4}}}     &amp;
+      \multirow{2}{*}{2} &amp; NC\_001603.2 &amp; Euglena gracilis \\ 
+      &amp;  &amp; NC\_020018.1 &amp; Monomorphina aenigmatica \\ 
+       \hline
+       % Entering seventh group
+       \parbox[t]{1mm}{\multirow{5}{*}{\rotatebox[origin=c]{90}{Ferns}}}     &amp;       \multirow{5}{*}{5}
+       &amp; NC\_003386.1 &amp; Psilotum nudum \\ 
+      &amp; &amp; NC\_008829.1 &amp; Angiopteris evecta \\
+      &amp;  &amp; NC\_014348.1 &amp; Pteridium aquilinum \\ 
+      &amp; &amp; NC\_014699.1 &amp; Equisetum arvense \\ 
+      &amp; &amp; NC\_017006.1 &amp; Mankyua chejuensis \\ 
+      \hline
+    % Entering tenth group
+       &amp; &amp; &amp; \\
+      \parbox[t]{1mm}{\multirow{1}{*}{\rotatebox[origin=c]{90}{F5}}}
+ &amp; 1 &amp; NC\_007288.1 &amp; Emiliana huxleyi\\
+       &amp; &amp; &amp; \\
+ \hline
+      % Entering eleventh group
+      \parbox[t]{1mm}{\multirow{2}{*}{\rotatebox[origin=c]{90}{F6}}}
+       &amp; \multirow{2}{*}{2} &amp; NC\_014675.1 &amp; Isoetes flaccida \\
+      &amp; &amp; NC\_006861.1 &amp; Huperzia lucidula \\
+      \hline
+ 
+
+    \end{tabular}
+  \end{minipage}    
+  \begin{minipage}{0.45\textwidth}
+   \begin{tabular}{|p{0.1cm}|p{0.1cm}|p{1.2cm}|p{2.7cm}|}
+      \hline
+      {{F.}}&amp;{{\#}} &amp; {{Acc. No}} &amp; {{Scientific Name}} \\ 
+      \hline
+
+      % Entering eighth group
+      \parbox[t]{1mm}{\multirow{45}{*}{\rotatebox[origin=c]{90}{Angiosperms}}}  
+      &amp; 
+      \multirow{45}{*}{45} &amp; NC\_007898.3 &amp; Solanum lyopersicum \\
+      &amp; &amp; NC\_001568.1 &amp; Epifagus virginiana \\ 
+      &amp; &amp; NC\_001666.2 &amp; Zea Mays \\ 
+      &amp; &amp; NC\_005086.1 &amp; Amborella trichopoda \\ 
+      &amp; &amp; NC\_006050.1 &amp; Nymphaea alba \\ 
+      &amp; &amp; NC\_006290.1 &amp; Panax ginseng \\ 
+      &amp; &amp; NC\_007578.1 &amp; Lactuca sativa \\ 
+      &amp; &amp; NC\_007957.1 &amp; vitis vinifera \\ 
+      &amp; &amp; NC\_007977.1 &amp; Helianthus annuus \\ 
+      &amp; &amp; NC\_008325.1 &amp; Daucus carota \\ 
+      &amp; &amp; NC\_008336.1 &amp; Nandina domestica \\ 
+      &amp; &amp; NC\_008359.1 &amp; Morus indica \\ 
+      &amp; &amp; NC\_008407.1 &amp; Jasminum nudiflorum \\ 
+      &amp; &amp; NC\_008456.1 &amp; Drimys granadensis \\ 
+      &amp; &amp; NC\_008457.1 &amp; Piper cenocladum \\ 
+      &amp; &amp; NC\_009601.1 &amp; Dioscorea elephantipes \\ 
+      &amp; &amp; NC\_009765.1 &amp; Cuscuta gronovii \\ 
+      &amp; &amp; NC\_009808.1 &amp; Ipomea purpurea \\ 
+      &amp; &amp; NC\_010361.1 &amp; Oenothera biennis \\ 
+      &amp; &amp; NC\_010433.1 &amp; Manihot esculenta \\ 
+      &amp; &amp; NC\_010442.1 &amp; Trachelium caeruleum \\ 
+      &amp; &amp; NC\_013707.2 &amp; Olea europea \\ 
+      &amp; &amp; NC\_013823.1 &amp; Typha latifolia \\ 
+      &amp; &amp; NC\_014570.1 &amp; Eucalyptus \\ 
+      &amp; &amp; NC\_014674.1 &amp; Castanea mollissima \\ 
+      &amp; &amp; NC\_014676.2 &amp; Theobroma cacao \\ 
+      &amp; &amp; NC\_015830.1 &amp; Bambusa emeiensis \\ 
+      &amp; &amp; NC\_015899.1 &amp; Wolffia australiana \\ 
+      &amp; &amp; NC\_016433.2 &amp; Sesamum indicum \\ 
+      &amp; &amp; NC\_016468.1 &amp; Boea hygrometrica \\ 
+      &amp; &amp; NC\_016670.1 &amp; Gossypium darwinii \\ 
+      &amp; &amp; NC\_016727.1 &amp; Silene vulgaris \\ 
+      &amp; &amp; NC\_016734.1 &amp; Brassica napus \\ 
+      &amp; &amp; NC\_016736.1 &amp; Ricinus communis \\ 
+      &amp; &amp; NC\_016753.1 &amp; Colocasia esculenta \\ 
+      &amp; &amp; NC\_017609.1 &amp; Phalaenopsis equestris \\ 
+      &amp; &amp; NC\_018357.1 &amp; Magnolia denudata \\ 
+      &amp; &amp; NC\_019601.1 &amp; Fragaria chiloensis \\ 
+      &amp; &amp; NC\_008796.1 &amp; Ranunculus macranthus \\ 
+      &amp; &amp; NC\_013991.2 &amp; Phoenix dactylifera \\ 
+      &amp; &amp; NC\_016068.1 &amp; Nicotiana undulata \\ 
+      \hline
+      % Entering ninth group
+      \parbox[t]{1mm}{\multirow{7}{*}{\rotatebox[origin=c]{90}{Gymnosperms}}}
+      &amp; 
+      \multirow{7}{*}{7}&amp; NC\_009618.1 &amp; Cycas taitungensis \\ 
+      &amp; &amp; NC\_011942.1 &amp; Gnetum parvifolium \\ 
+      &amp; &amp; NC\_016058.1 &amp; Larix decidua \\ 
+      &amp; &amp; NC\_016063.1 &amp; Cephalotaxus wilsoniana \\ 
+      &amp; &amp; NC\_016065.1 &amp; Taiwania cryptomerioides \\ 
+      &amp; &amp; NC\_016069.1 &amp; Picea morrisonicola \\ 
+      &amp; &amp; NC\_016986.1 &amp; Gingko biloba \\ 
+      \hline
+     \end{tabular}
+  \end{minipage}
+ 
+  \scriptsize 
+  \noindent where lineages F1, F2, F3, F4, F5, and F6 are 
+  Red Algae,
+  Bryophytes, 
+  Dinoflagellates,
+  Euglena,
+  Haptophytes, and Lycophytes respectively.
+  \normalsize
+  \end{table}
+\end{center}  
+
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