X-Git-Url: https://bilbo.iut-bm.univ-fcomte.fr/and/gitweb/chloroplast13.git/blobdiff_plain/f732f6bb4443a951d307f0faeb33117b78b6e7a5..refs/heads/master:/population_Table.tex?ds=inline diff --git a/population_Table.tex b/population_Table.tex index c9b1619..7f1536c 100644 --- a/population_Table.tex +++ b/population_Table.tex @@ -1,118 +1,166 @@ -\footnotesize -\tiny -\setlength\LTleft{0pt} -\setlength\LTright{0pt} -\begin{longtable}{@{\extracolsep{\fill}}llllllllll@{}} -\caption[NCBI Genomes Families]{List of family groups of Chloroplast Genomes from NCBI\label{Tab2}}\\ -% Heading - \hline\hline - {\textbf{Family}} & {\textbf{Counts}} & {\textbf{Accession No}} & {\textbf{Scientific Name}} \\ - \hline +\begin{center} + \begin{table} + \tiny + \caption[NCBI Genomes Families]{List of chloroplast genomes of photosynthetic Eucaryotes lineages from NCBI\label{Tab2}} + \begin{minipage}{0.50\textwidth} + \setlength{\tabcolsep}{4pt} + \begin{tabular}{|p{0.1cm}|p{0.1cm}|p{1.3cm}|p{3cm}|} + \hline + {{F.}}&{{\#}} & {{Acc. No}} & {{Scientific Name}} \\ + \hline %Entering First line - & & NC\_001713.1 & Odontella sinensis \\ - & & NC\_008588.1 & Phaeodactylum tricornutum \\ - & & NC\_010772.1 & Heterosigma akashiwo \\ - & & NC\_011600.1 & Vaucheria litorea \\ - & & NC\_012903.1 & Aureoumbra lagunensis \\ - Brown Algae & 11 & NC\_014808.1 & Thalassiosira oceanica \\ - & & NC\_015403.1 & Fistulifera sp \\ - & & NC\_016731.1 & Synedra acus \\ - & & NC\_016735.1 & Fucus vesiculosus \\ - & & NC\_018523.1 & Saccharina japonica \\ - & & NC\_020014.1 & Nannochloropsis gadtina \\ [1ex] - %Entering second group - & & NC\_000925.1 & Porphyra purpurea \\ - Red Algae & 3 & NC\_001840.1 & Cyanidium caldarium \\ - & & NC\_006137.1 & Gracilaria tenuistipitata \\ [1ex] - %Entering third group - & & NC\_000927.1 & Nephroselmis olivacea \\ - & & NC\_002186.1 & Mesotigma viride \\ - & & NC\_005353.1 & Chlamydomonas reinhardtii \\ - & & NC\_008097.1 & Chara vulgaris \\ - & & NC\_008099.1 & Oltmannsiellopsis viridis \\ - & & NC\_008114.1 & Pseudoclonium akinetum \\ - & & NC\_008289.1 & Ostreococcus tauri \\ - & & NC\_008372.1 & Stigeoclonium helveticum \\ - Green Algae & 17 & NC\_008822.1 & Chlorokybus atmophyticus \\ - & & NC\_011031.1 & Oedogonium cardiacum \\ - & & NC\_012097.1 & Pycnococcus provaseolii \\ - & & NC\_012099.1 & Pyramimonas parkeae \\ - & & NC\_012568.1 & Micromonas pusilla \\ - & & NC\_014346.1 & Floydiella terrestris \\ - & & NC\_015645.1 & Schizomeris leibleinii \\ - & & NC\_016732.1 & Dunaliella salina \\ - & & NC\_016733.1 & Pedinomonas minor \\ [1ex] - %Entering fourth group - & & NC\_001319.1 & Marchantia polymorpha \\ - Brypoytes & 3 & NC\_004543.1 & Anthoceros formosae \\ - & & NC\_005087.1 & Physcomitrella patens \\ [1ex] - %Entering fifth group - & & NC\_014267.1 & Kryptoperidinium foliaceum \\ - Dinoflagellates & 2 - & NC\_014287.1 & Durinskia baltica \\ [1ex] - %Entering sixth group - & & NC\_001603.2 & Euglena gracilis \\ - Euglena & 2 & NC\_020018.1 & Monomorphina aenigmatica \\ [1ex] - %Entering seventh group - & & NC\_003386.1 & Psilotum nudum \\ - & & NC\_008829.1 & Angiopteris evecta \\ - Fern & 5 & NC\_014348.1 & Pteridium aquilinum \\ - & & NC\_014699.1 & Equisetum arvense \\ - & & NC\_017006.1 & Mankyua chejuensis \\ [1ex] - % Entering eighth group - & & NC\_007898.3 & Solanum lyopersicum \\ - & & NC\_001568.1 & Epifagus virginiana \\ - & & NC\_001666.2 & Zea Mays \\ - & & NC\_005086.1 & Amborella trichopoda \\ - & & NC\_006050.1 & Nymphaea alba \\ - & & NC\_006290.1 & Panax ginseng \\ - & & NC\_007578.1 & Lactuca sativa \\ - & & NC\_007957.1 & vitis vinifera \\ - & & NC\_007977.1 & Helianthus annuus \\ - & & NC\_008325.1 & Daucus carota \\ - & & NC\_008336.1 & Nandina domestica \\ - & & NC\_008359.1 & Morus indica \\ - & & NC\_008407.1 & Jasminum nudiflorum \\ - & & NC\_008456.1 & Drimys granadensis \\ - & & NC\_008457.1 & Piper cenocladum \\ - & & NC\_009601.1 & Dioscorea elephantipes \\ - & & NC\_009765.1 & Cuscuta gronovii \\ - & & NC\_009808.1 & Ipomea purpurea \\ - Angiosperms & 45 & NC\_010361.1 & Oenothera biennis \\ - & & NC\_010433.1 & Manihot esculenta \\ - & & NC\_010442.1 & Trachelium caeruleum \\ - & & NC\_013707.2 & Olea europea \\ - & & NC\_013823.1 & Typha latifolia \\ - & & NC\_014570.1 & Eucalyptus \\ - & & NC\_014674.1 & Castanea mollissima \\ - & & NC\_014676.2 & Theobroma cacao \\ - & & NC\_015830.1 & Bambusa emeiensis \\ - & & NC\_015899.1 & Wolffia australiana \\ - & & NC\_016433.2 & Sesamum indicum \\ - & & NC\_016468.1 & Boea hygrometrica \\ - & & NC\_016670.1 & Gossypium darwinii \\ - & & NC\_016727.1 & Silene vulgaris \\ - & & NC\_016734.1 & Brassica napus \\ - & & NC\_016736.1 & Ricinus communis \\ - & & NC\_016753.1 & Colocasia esculenta \\ - & & NC\_017609.1 & Phalaenopsis equestris \\ - & & NC\_018357.1 & Magnolia denudata \\ - & & NC\_019601.1 & Fragaria chiloensis \\ - & & NC\_008796.1 & Ranunculus macranthus \\ - & & NC\_013991.2 & Phoenix dactylifera \\ - & & NC\_016068.1 & Nicotiana undulata \\ [1ex] - %Entering ninth group - & & NC\_009618.1 & Cycas taitungensis \\ - & & NC\_011942.1 & Gnetum parvifolium \\ - & & NC\_016058.1 & Larix decidua \\ - Gymnosperms & 7 & NC\_016063.1 & Cephalotaxus wilsoniana \\ - & & NC\_016065.1 & Taiwania cryptomerioides \\ - & & NC\_016069.1 & Picea morrisonicola \\ - & & NC\_016986.1 & Gingko biloba \\ [1ex] - %Entering tenth group - Haptophytes & 1 & NC\_007288.1 & Emiliana huxleyi\\ [1ex] - %Entering eleventh group - Lycopodiophyta & 2 & NC\_014675.1 & Isoetes flaccida \\ - & & NC\_006861.1 & Huperzia lucidula \\ - \hline -\end{longtable} \ No newline at end of file + \parbox[t]{1mm}{\multirow{11}{*}{\rotatebox[origin=c]{90}{Brown Algae}}} &\multirow{11}{*}{11} & NC\_001713.1 & Odontella sinensis \\ + & & NC\_008588.1 & Phaeodactylum tricornutum \\ + & & NC\_010772.1 & Heterosigma akashiwo \\ + & & NC\_011600.1 & Vaucheria litorea \\ + & & NC\_012903.1 & Aureoumbra lagunensis \\ + & & NC\_014808.1 & Thalassiosira oceanica \\ + & & NC\_015403.1 & Fistulifera sp \\ + & & NC\_016731.1 & Synedra acus \\ + & & NC\_016735.1 & Fucus vesiculosus \\ + & & NC\_018523.1 & Saccharina japonica \\ + & & NC\_020014.1 & Nannochloropsis gadtina \\ + \hline + % Entering second group + \parbox[t]{1mm}{\multirow{3}{*}{\rotatebox[origin=c]{90}{F1}}} & + \multirow{3}{*}{3} & NC\_000925.1 & Porphyra purpurea \\ + & & NC\_001840.1 & Cyanidium caldarium \\ + & & NC\_006137.1 & Gracilaria tenuistipitata \\ + \hline + % Entering third group + \parbox[t]{1mm}{\multirow{17}{*}{\rotatebox[origin=c]{90}{Green Algae}}} & + \multirow{17}{*}{17} & NC\_000927.1 & Nephroselmis olivacea \\ + & & NC\_002186.1 & Mesotigma viride \\ + & & NC\_005353.1 & Chlamydomonas reinhardtii \\ + & & NC\_008097.1 & Chara vulgaris \\ + & & NC\_008099.1 & Oltmannsiellopsis viridis \\ + & & NC\_008114.1 & Pseudoclonium akinetum \\ + & & NC\_008289.1 & Ostreococcus tauri \\ + & & NC\_008372.1 & Stigeoclonium helveticum \\ + & & NC\_008822.1 & Chlorokybus atmophyticus \\ + & & NC\_011031.1 & Oedogonium cardiacum \\ + & & NC\_012097.1 & Pycnococcus provaseolii \\ + & & NC\_012099.1 & Pyramimonas parkeae \\ + & & NC\_012568.1 & Micromonas pusilla \\ + & & NC\_014346.1 & Floydiella terrestris \\ + & & NC\_015645.1 & Schizomeris leibleinii \\ + & & NC\_016732.1 & Dunaliella salina \\ + & & NC\_016733.1 & Pedinomonas minor \\ % + \hline + % Entering fourth group + \parbox[t]{1mm}{\multirow{3}{*}{\rotatebox[origin=c]{90}{F2}}} & + \multirow{3}{*}{3} & NC\_001319.1 & Marchantia polymorpha \\ + & & NC\_004543.1 & Anthoceros formosae \\ + & & NC\_005087.1 & Physcomitrella patens \\ % + \hline + % Entering fifth group + \parbox[t]{1mm}{\multirow{2}{*}{\rotatebox[origin=c]{90}{F3}}} & + \multirow{2}{*}{2} & NC\_014267.1 & Kryptoperidinium foliaceum \\ + & + & NC\_014287.1 & Durinskia baltica \\ + \hline + + % Entering sixth group + \parbox[t]{1mm}{\multirow{2}{*}{\rotatebox[origin=c]{90}{F4}}} & + \multirow{2}{*}{2} & NC\_001603.2 & Euglena gracilis \\ + & & NC\_020018.1 & Monomorphina aenigmatica \\ + \hline + % Entering seventh group + \parbox[t]{1mm}{\multirow{5}{*}{\rotatebox[origin=c]{90}{Ferns}}} & \multirow{5}{*}{5} + & NC\_003386.1 & Psilotum nudum \\ + & & NC\_008829.1 & Angiopteris evecta \\ + & & NC\_014348.1 & Pteridium aquilinum \\ + & & NC\_014699.1 & Equisetum arvense \\ + & & NC\_017006.1 & Mankyua chejuensis \\ + \hline + % Entering tenth group + & & & \\ + \parbox[t]{1mm}{\multirow{1}{*}{\rotatebox[origin=c]{90}{F5}}} + & 1 & NC\_007288.1 & Emiliana huxleyi\\ + & & & \\ + \hline + % Entering eleventh group + \parbox[t]{1mm}{\multirow{2}{*}{\rotatebox[origin=c]{90}{F6}}} + & \multirow{2}{*}{2} & NC\_014675.1 & Isoetes flaccida \\ + & & NC\_006861.1 & Huperzia lucidula \\ + \hline + + + \end{tabular} + \end{minipage} + \begin{minipage}{0.45\textwidth} + \begin{tabular}{|p{0.1cm}|p{0.1cm}|p{1.2cm}|p{2.7cm}|} + \hline + {{F.}}&{{\#}} & {{Acc. No}} & {{Scientific Name}} \\ + \hline + + % Entering eighth group + \parbox[t]{1mm}{\multirow{45}{*}{\rotatebox[origin=c]{90}{Angiosperms}}} + & + \multirow{45}{*}{45} & NC\_007898.3 & Solanum lyopersicum \\ + & & NC\_001568.1 & Epifagus virginiana \\ + & & NC\_001666.2 & Zea Mays \\ + & & NC\_005086.1 & Amborella trichopoda \\ + & & NC\_006050.1 & Nymphaea alba \\ + & & NC\_006290.1 & Panax ginseng \\ + & & NC\_007578.1 & Lactuca sativa \\ + & & NC\_007957.1 & vitis vinifera \\ + & & NC\_007977.1 & Helianthus annuus \\ + & & NC\_008325.1 & Daucus carota \\ + & & NC\_008336.1 & Nandina domestica \\ + & & NC\_008359.1 & Morus indica \\ + & & NC\_008407.1 & Jasminum nudiflorum \\ + & & NC\_008456.1 & Drimys granadensis \\ + & & NC\_008457.1 & Piper cenocladum \\ + & & NC\_009601.1 & Dioscorea elephantipes \\ + & & NC\_009765.1 & Cuscuta gronovii \\ + & & NC\_009808.1 & Ipomea purpurea \\ + & & NC\_010361.1 & Oenothera biennis \\ + & & NC\_010433.1 & Manihot esculenta \\ + & & NC\_010442.1 & Trachelium caeruleum \\ + & & NC\_013707.2 & Olea europea \\ + & & NC\_013823.1 & Typha latifolia \\ + & & NC\_014570.1 & Eucalyptus \\ + & & NC\_014674.1 & Castanea mollissima \\ + & & NC\_014676.2 & Theobroma cacao \\ + & & NC\_015830.1 & Bambusa emeiensis \\ + & & NC\_015899.1 & Wolffia australiana \\ + & & NC\_016433.2 & Sesamum indicum \\ + & & NC\_016468.1 & Boea hygrometrica \\ + & & NC\_016670.1 & Gossypium darwinii \\ + & & NC\_016727.1 & Silene vulgaris \\ + & & NC\_016734.1 & Brassica napus \\ + & & NC\_016736.1 & Ricinus communis \\ + & & NC\_016753.1 & Colocasia esculenta \\ + & & NC\_017609.1 & Phalaenopsis equestris \\ + & & NC\_018357.1 & Magnolia denudata \\ + & & NC\_019601.1 & Fragaria chiloensis \\ + & & NC\_008796.1 & Ranunculus macranthus \\ + & & NC\_013991.2 & Phoenix dactylifera \\ + & & NC\_016068.1 & Nicotiana undulata \\ + \hline + % Entering ninth group + \parbox[t]{1mm}{\multirow{7}{*}{\rotatebox[origin=c]{90}{Gymnosperms}}} + & + \multirow{7}{*}{7}& NC\_009618.1 & Cycas taitungensis \\ + & & NC\_011942.1 & Gnetum parvifolium \\ + & & NC\_016058.1 & Larix decidua \\ + & & NC\_016063.1 & Cephalotaxus wilsoniana \\ + & & NC\_016065.1 & Taiwania cryptomerioides \\ + & & NC\_016069.1 & Picea morrisonicola \\ + & & NC\_016986.1 & Gingko biloba \\ + \hline + \end{tabular} + \end{minipage} + + \scriptsize + \noindent where lineages F1, F2, F3, F4, F5, and F6 are + Red Algae, + Bryophytes, + Dinoflagellates, + Euglena, + Haptophytes, and Lycophytes respectively. + \normalsize + \end{table} +\end{center} +