From: bassam al-kindy <bassam.al-kindy@lifc>
Date: Tue, 5 Nov 2013 09:06:16 +0000 (+0100)
Subject: Updated files
X-Git-Url: https://bilbo.iut-bm.univ-fcomte.fr/and/gitweb/chloroplast13.git/commitdiff_plain/c3bc9b78abb7c8a25cd497b8d4b80f0ba8b8edb3?ds=sidebyside

Updated files
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diff --git a/NCBI_annotation.png b/NCBI_annotation.png
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diff --git a/intro.tex b/intro.tex
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diff --git a/population_Table.tex b/population_Table.tex
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+\footnotesize 
+\setlength\LTleft{-30pt}            
+\setlength\LTright{-30pt}           
+\begin{longtable}{@{\extracolsep{\fill}}llllllllll@{}}
+\caption[NCBI Genomes Families]{List of family groups of Chloroplast Genomes from NCBI\label{Tab2}}\\
+% Heading
+	\hline\hline
+	{\textbf{Category}} & {\textbf{Counts}} & {\textbf{Accession No}} & {\textbf{Scientific Name}} \\ 
+	\hline
+	%Entering First line
+	  & & NC\_001713.1 & Odontella sinensis \\ 
+	  & & NC\_008588.1 & Phaeodactylum tricornutum \\ 
+	  & & NC\_010772.1 & Heterosigma akashiwo \\ 
+	  & & NC\_011600.1 & Vaucheria litorea \\ 
+	  & & NC\_012903.1 & Aureoumbra lagunensis \\ 
+	  Brown Algae & 11 & NC\_014808.1 & Thalassiosira oceanica \\ 
+	  & & NC\_015403.1 & Fistulifera sp \\ 
+	  & & NC\_016731.1 & Synedra acus \\ 
+	  & & NC\_016735.1 & Fucus vesiculosus \\ 
+	  & & NC\_018523.1 & Saccharina japonica \\ 
+	  & & NC\_020014.1 & Nannochloropsis gadtina \\ [1ex]
+	%Entering second group
+	  & & NC\_000925.1 & Porphyra purpurea \\ 
+	  Red Algae & 3 & NC\_001840.1 & Cyanidium caldarium \\ 
+	  & & NC\_006137.1 & Gracilaria tenuistipitata \\ [1ex]
+	 %Entering third group
+	  & & NC\_000927.1 & Nephroselmis olivacea \\ 
+	  & & NC\_002186.1 & Mesotigma viride \\ 
+	  & & NC\_005353.1 & Chlamydomonas reinhardtii \\ 
+	  & & NC\_008097.1 & Chara vulgaris \\ 
+	  & & NC\_008099.1 & Oltmannsiellopsis viridis \\ 
+	  & & NC\_008114.1 & Pseudoclonium akinetum \\ 
+	  & & NC\_008289.1 & Ostreococcus tauri \\ 
+	  & & NC\_008372.1 & Stigeoclonium helveticum \\ 
+	  Green Algae & 17 & NC\_008822.1 & Chlorokybus atmophyticus \\ 
+	  & & NC\_011031.1 & Oedogonium cardiacum \\ 
+	  & & NC\_012097.1 & Pycnococcus provaseolii \\ 
+	  & & NC\_012099.1 & Pyramimonas parkeae \\ 
+	  & & NC\_012568.1 & Micromonas pusilla \\ 
+	  & & NC\_014346.1 & Floydiella terrestris \\ 
+	  & & NC\_015645.1 & Schizomeris leibleinii \\ 
+	  & & NC\_016732.1 & Dunaliella salina \\ 
+	  & & NC\_016733.1 & Pedinomonas minor \\ [1ex] 
+	 %Entering fourth group
+	  & & NC\_001319.1 & Marchantia polymorpha \\ 
+	  Brypoytes & 3 & NC\_004543.1 & Anthoceros formosae \\ 
+	  & & NC\_005087.1 & Physcomitrella patens \\ [1ex]
+	 %Entering fifth group
+	  & & NC\_014267.1 & Kryptoperidinium foliaceum \\ 
+	  Dinoflagellates & 2
+	  	& NC\_014287.1 & Durinskia baltica \\ [1ex]
+	 %Entering sixth group
+	  & & NC\_001603.2 & Euglena gracilis \\ 
+	  Euglena & 2 & NC\_020018.1 & Monomorphina aenigmatica \\ [1ex]
+	 %Entering seventh group
+	  & & NC\_003386.1 & Psilotum nudum \\ 
+	  & & NC\_008829.1 & Angiopteris evecta \\
+	  Fern & 5 & NC\_014348.1 & Pteridium aquilinum \\ 
+	  & & NC\_014699.1 & Equisetum arvense \\ 
+	  & & NC\_017006.1 & Mankyua chejuensis \\ [1ex]
+	  % Entering eighth group
+	  & & NC\_007898.3 & Solanum lyopersicum \\
+	  & & NC\_001568.1 & Epifagus virginiana \\ 
+	  & & NC\_001666.2 & Zea Mays \\ 
+	  & & NC\_005086.1 & Amborella trichopoda \\ 
+	  & & NC\_006050.1 & Nymphaea alba \\ 
+	  & & NC\_006290.1 & Panax ginseng \\ 
+	  & & NC\_007578.1 & Lactuca sativa \\ 
+	  & & NC\_007957.1 & vitis vinifera \\ 
+	  & & NC\_007977.1 & Helianthus annuus \\ 
+	  & & NC\_008325.1 & Daucus carota \\ 
+	  & & NC\_008336.1 & Nandina domestica \\ 
+	  & & NC\_008359.1 & Morus indica \\ 
+	  & & NC\_008407.1 & Jasminum nudiflorum \\ 
+	  & & NC\_008456.1 & Drimys granadensis \\ 
+	  & & NC\_008457.1 & Piper cenocladum \\ 
+	  & & NC\_009601.1 & Dioscorea elephantipes \\ 
+	  & & NC\_009765.1 & Cuscuta gronovii \\ 
+	  & & NC\_009808.1 & Ipomea purpurea \\ 
+	 Angiosperms & 45 & NC\_010361.1 & Oenothera biennis \\ 
+	  & & NC\_010433.1 & Manihot esculenta \\ 
+	  & & NC\_010442.1 & Trachelium caeruleum \\ 
+	  & & NC\_013707.2 & Olea europea \\ 
+	  & & NC\_013823.1 & Typha latifolia \\ 
+	  & & NC\_014570.1 & Eucalyptus \\ 
+	  & & NC\_014674.1 & Castanea mollissima \\ 
+	  & & NC\_014676.2 & Theobroma cacao \\ 
+	  & & NC\_015830.1 & Bambusa emeiensis \\ 
+	  & & NC\_015899.1 & Wolffia australiana \\ 
+	  & & NC\_016433.2 & Sesamum indicum \\ 
+	  & & NC\_016468.1 & Boea hygrometrica \\ 
+	  & & NC\_016670.1 & Gossypium darwinii \\ 
+	  & & NC\_016727.1 & Silene vulgaris \\ 
+	  & & NC\_016734.1 & Brassica napus \\ 
+	  & & NC\_016736.1 & Ricinus communis \\ 
+	  & & NC\_016753.1 & Colocasia esculenta \\ 
+	  & & NC\_017609.1 & Phalaenopsis equestris \\ 
+	  & & NC\_018357.1 & Magnolia denudata \\ 
+	  & & NC\_019601.1 & Fragaria chiloensis \\ 
+	  & & NC\_008796.1 & Ranunculus macranthus \\ 
+	  & & NC\_013991.2 & Phoenix dactylifera \\ 
+	  & & NC\_016068.1 & Nicotiana undulata \\ [1ex]
+	  %Entering ninth group
+	  & & NC\_009618.1 & Cycas taitungensis \\ 
+	  & & NC\_011942.1 & Gnetum parvifolium \\ 
+	  & & NC\_016058.1 & Larix decidua \\ 
+	  Gymnosperms & 7 & NC\_016063.1 & Cephalotaxus wilsoniana \\ 
+	  & & NC\_016065.1 & Taiwania cryptomerioides \\ 
+	  & & NC\_016069.1 & Picea morrisonicola \\ 
+	  & & NC\_016986.1 & Gingko biloba \\ [1ex]
+	  %Entering tenth group
+	  Haptophytes & 1 & NC\_007288.1 & Emiliana huxleyi\\ [1ex]
+	  %Entering eleventh group
+	  Lycopodiophyta & 2 & NC\_014675.1 & Isoetes flaccida \\
+	  & & NC\_006861.1 & Huperzia lucidula \\
+	\hline
+\end{longtable}
\ No newline at end of file