From: bassam al-kindy Date: Tue, 5 Nov 2013 09:06:16 +0000 (+0100) Subject: Updated files X-Git-Url: https://bilbo.iut-bm.univ-fcomte.fr/and/gitweb/chloroplast13.git/commitdiff_plain/c3bc9b78abb7c8a25cd497b8d4b80f0ba8b8edb3?ds=sidebyside;hp=--cc Updated files --- c3bc9b78abb7c8a25cd497b8d4b80f0ba8b8edb3 diff --git a/NCBI_annotation.png b/NCBI_annotation.png new file mode 100644 index 0000000..20a6414 Binary files /dev/null and b/NCBI_annotation.png differ diff --git a/intro.tex b/intro.tex new file mode 100644 index 0000000..e69de29 diff --git a/population_Table.tex b/population_Table.tex new file mode 100644 index 0000000..6071e66 --- /dev/null +++ b/population_Table.tex @@ -0,0 +1,117 @@ +\footnotesize +\setlength\LTleft{-30pt} +\setlength\LTright{-30pt} +\begin{longtable}{@{\extracolsep{\fill}}llllllllll@{}} +\caption[NCBI Genomes Families]{List of family groups of Chloroplast Genomes from NCBI\label{Tab2}}\\ +% Heading + \hline\hline + {\textbf{Category}} & {\textbf{Counts}} & {\textbf{Accession No}} & {\textbf{Scientific Name}} \\ + \hline + %Entering First line + & & NC\_001713.1 & Odontella sinensis \\ + & & NC\_008588.1 & Phaeodactylum tricornutum \\ + & & NC\_010772.1 & Heterosigma akashiwo \\ + & & NC\_011600.1 & Vaucheria litorea \\ + & & NC\_012903.1 & Aureoumbra lagunensis \\ + Brown Algae & 11 & NC\_014808.1 & Thalassiosira oceanica \\ + & & NC\_015403.1 & Fistulifera sp \\ + & & NC\_016731.1 & Synedra acus \\ + & & NC\_016735.1 & Fucus vesiculosus \\ + & & NC\_018523.1 & Saccharina japonica \\ + & & NC\_020014.1 & Nannochloropsis gadtina \\ [1ex] + %Entering second group + & & NC\_000925.1 & Porphyra purpurea \\ + Red Algae & 3 & NC\_001840.1 & Cyanidium caldarium \\ + & & NC\_006137.1 & Gracilaria tenuistipitata \\ [1ex] + %Entering third group + & & NC\_000927.1 & Nephroselmis olivacea \\ + & & NC\_002186.1 & Mesotigma viride \\ + & & NC\_005353.1 & Chlamydomonas reinhardtii \\ + & & NC\_008097.1 & Chara vulgaris \\ + & & NC\_008099.1 & Oltmannsiellopsis viridis \\ + & & NC\_008114.1 & Pseudoclonium akinetum \\ + & & NC\_008289.1 & Ostreococcus tauri \\ + & & NC\_008372.1 & Stigeoclonium helveticum \\ + Green Algae & 17 & NC\_008822.1 & Chlorokybus atmophyticus \\ + & & NC\_011031.1 & Oedogonium cardiacum \\ + & & NC\_012097.1 & Pycnococcus provaseolii \\ + & & NC\_012099.1 & Pyramimonas parkeae \\ + & & NC\_012568.1 & Micromonas pusilla \\ + & & NC\_014346.1 & Floydiella terrestris \\ + & & NC\_015645.1 & Schizomeris leibleinii \\ + & & NC\_016732.1 & Dunaliella salina \\ + & & NC\_016733.1 & Pedinomonas minor \\ [1ex] + %Entering fourth group + & & NC\_001319.1 & Marchantia polymorpha \\ + Brypoytes & 3 & NC\_004543.1 & Anthoceros formosae \\ + & & NC\_005087.1 & Physcomitrella patens \\ [1ex] + %Entering fifth group + & & NC\_014267.1 & Kryptoperidinium foliaceum \\ + Dinoflagellates & 2 + & NC\_014287.1 & Durinskia baltica \\ [1ex] + %Entering sixth group + & & NC\_001603.2 & Euglena gracilis \\ + Euglena & 2 & NC\_020018.1 & Monomorphina aenigmatica \\ [1ex] + %Entering seventh group + & & NC\_003386.1 & Psilotum nudum \\ + & & NC\_008829.1 & Angiopteris evecta \\ + Fern & 5 & NC\_014348.1 & Pteridium aquilinum \\ + & & NC\_014699.1 & Equisetum arvense \\ + & & NC\_017006.1 & Mankyua chejuensis \\ [1ex] + % Entering eighth group + & & NC\_007898.3 & Solanum lyopersicum \\ + & & NC\_001568.1 & Epifagus virginiana \\ + & & NC\_001666.2 & Zea Mays \\ + & & NC\_005086.1 & Amborella trichopoda \\ + & & NC\_006050.1 & Nymphaea alba \\ + & & NC\_006290.1 & Panax ginseng \\ + & & NC\_007578.1 & Lactuca sativa \\ + & & NC\_007957.1 & vitis vinifera \\ + & & NC\_007977.1 & Helianthus annuus \\ + & & NC\_008325.1 & Daucus carota \\ + & & NC\_008336.1 & Nandina domestica \\ + & & NC\_008359.1 & Morus indica \\ + & & NC\_008407.1 & Jasminum nudiflorum \\ + & & NC\_008456.1 & Drimys granadensis \\ + & & NC\_008457.1 & Piper cenocladum \\ + & & NC\_009601.1 & Dioscorea elephantipes \\ + & & NC\_009765.1 & Cuscuta gronovii \\ + & & NC\_009808.1 & Ipomea purpurea \\ + Angiosperms & 45 & NC\_010361.1 & Oenothera biennis \\ + & & NC\_010433.1 & Manihot esculenta \\ + & & NC\_010442.1 & Trachelium caeruleum \\ + & & NC\_013707.2 & Olea europea \\ + & & NC\_013823.1 & Typha latifolia \\ + & & NC\_014570.1 & Eucalyptus \\ + & & NC\_014674.1 & Castanea mollissima \\ + & & NC\_014676.2 & Theobroma cacao \\ + & & NC\_015830.1 & Bambusa emeiensis \\ + & & NC\_015899.1 & Wolffia australiana \\ + & & NC\_016433.2 & Sesamum indicum \\ + & & NC\_016468.1 & Boea hygrometrica \\ + & & NC\_016670.1 & Gossypium darwinii \\ + & & NC\_016727.1 & Silene vulgaris \\ + & & NC\_016734.1 & Brassica napus \\ + & & NC\_016736.1 & Ricinus communis \\ + & & NC\_016753.1 & Colocasia esculenta \\ + & & NC\_017609.1 & Phalaenopsis equestris \\ + & & NC\_018357.1 & Magnolia denudata \\ + & & NC\_019601.1 & Fragaria chiloensis \\ + & & NC\_008796.1 & Ranunculus macranthus \\ + & & NC\_013991.2 & Phoenix dactylifera \\ + & & NC\_016068.1 & Nicotiana undulata \\ [1ex] + %Entering ninth group + & & NC\_009618.1 & Cycas taitungensis \\ + & & NC\_011942.1 & Gnetum parvifolium \\ + & & NC\_016058.1 & Larix decidua \\ + Gymnosperms & 7 & NC\_016063.1 & Cephalotaxus wilsoniana \\ + & & NC\_016065.1 & Taiwania cryptomerioides \\ + & & NC\_016069.1 & Picea morrisonicola \\ + & & NC\_016986.1 & Gingko biloba \\ [1ex] + %Entering tenth group + Haptophytes & 1 & NC\_007288.1 & Emiliana huxleyi\\ [1ex] + %Entering eleventh group + Lycopodiophyta & 2 & NC\_014675.1 & Isoetes flaccida \\ + & & NC\_006861.1 & Huperzia lucidula \\ + \hline +\end{longtable} \ No newline at end of file