From: bassam al-kindy <bassam.al-kindy@lifc>
Date: Mon, 2 Dec 2013 15:36:25 +0000 (+0100)
Subject: update version with discussion
X-Git-Url: https://bilbo.iut-bm.univ-fcomte.fr/and/gitweb/chloroplast13.git/commitdiff_plain/c4e790fc4e8c0442d8ffa296055c2407238ce291?ds=sidebyside;hp=-c

update version with discussion
---

c4e790fc4e8c0442d8ffa296055c2407238ce291
diff --git a/intro.tex b/intro.tex
index a0a6050..ddb2fcb 100644
--- a/intro.tex
+++ b/intro.tex
@@ -4,4 +4,23 @@ build a genes  content evolutionary tree. More precisely,  we focus on
 the following  questions considering a  collection of 99~chloroplasts
 annotated from NCBI \cite{Sayers01012011} and Dogma \cite{RDogma}: how
 can  we identify the  best core  genome and  what is  the evolutionary
-scenario of these chloroplasts.
+scenario of these chloroplasts.\\
+Chloroplast (such as mitochondria) are fondamental key elements in 
+living organisms history. Indeed, chlorplast in Eucaryotes are organites responsible for 
+photosynthesis. Photosynthesis is the main way to produce organic matter 
+from mineral matter, using solar energy. Consequently photosynthetic 
+organisms are at the base of most ecosystems trophic chains and 
+photosynthesis in eucaryotes allowed a great speciation in the lineage 
+(to a great biodiversity). From an ecological point of view, 
+photosynthetic organisms are at the origin of the presence of dioxygen 
+in the atmosphere (allowing extant life) and are the main source of mid- 
+to long term carbon stockage (using atmospheric CO2, important in the 
+context of climate change). Chloroplast found in Eucaryots have an endosymbiotic origin, meaning 
+that they are a fusion of a photosynthetic bacteria (Cyanobacteria) and 
+a eucaryotic cell (enable to produce organic matter = heterotrophic). 
+This fusion or First Endiosymbiosis ended in a Great diversification of 
+a lineage comprising Red Algae, Green Algae and Land Plants (terrestrial).
+Several Second Enbiosymbioses occurred then: two involving a Red 
+Algae and other heterotrophic eucaryotes and giving birth to both Brown 
+Algae and Dinoflagellates lineages; another involving a Green Algae and 
+a heterotrophic eucaryot and giving birth to Euglens.
\ No newline at end of file
diff --git a/main.tex b/main.tex
index 605134f..963d74d 100755
--- a/main.tex
+++ b/main.tex
@@ -52,7 +52,8 @@ Universit\'{e} de Franche-Comt\'{e}, France \\
 
 % \section{Second Stage: to Find Closed Genomes}
 % \input{closedgenomes}
-
+\section{Discussion}
+\input{discussion.tex}
 \section{Conclusion}\label{sec:concl}
 
 \bibliographystyle{plain}