Start of text about SimGrid. More to come.

[hpcc2014.git] / hpcc.tex

diff --git a/hpcc.tex b/hpcc.tex
index 1dc732c72e1200b6990901866839b807b760533e..ab6e020e98836594820e875ab29cc7ab656875d7 100644 (file)
--- a/hpcc.tex
+++ b/hpcc.tex
@@ -4,7 +4,7 @@
 \usepackage[utf8]{inputenc}
 \usepackage{amsfonts,amssymb}
 \usepackage{amsmath}
 \usepackage[utf8]{inputenc}
 \usepackage{amsfonts,amssymb}
 \usepackage{amsmath}

-\usepackage{algorithm}
+%\usepackage{algorithm}

 \usepackage{algpseudocode}
 %\usepackage{amsthm}
 \usepackage{graphicx}
 \usepackage{algpseudocode}
 %\usepackage{amsthm}
 \usepackage{graphicx}


@@ -173,12 +173,33 @@ our future work after the results.
 
 \section{SimGrid}
 
 
 \section{SimGrid}
 

-\AG{Décrire SimGrid~\cite{casanova+legrand+quinson.2008.simgrid,SimGrid} (Arnaud)}
+SimGrid~\cite{casanova+legrand+quinson.2008.simgrid,SimGrid} is a simulation
+framework to sudy the behavior of large-scale distributed systems.  As its name
+says, it emanates from the grid computing community, but is nowadays used to
+study grids, clouds, HPC or peer-to-peer systems.
+%- open source, developped since 1999, one of the major solution in the field
+%
+SimGrid provides several programming interfaces: MSG to simulate Concurrent
+Sequential Processes, SimDAG to simulate DAGs of (parallel) tasks, and SMPI to
+run real applications written in MPI~\cite{MPI}.  Apart from the native C
+interface, SimGrid provides bindings for the C++, Java, Lua and Ruby programming
+languages.  The SMPI interface supports applications written in C or Fortran,
+with little or no modifications.
+%- implements most of MPI-2 \cite{ref} standard [CHECK]
+
+%%% explain simulation
+%- simulated processes folded in one real process
+%- simulates interactions on the network, fluid model
+%- able to skip long-lasting computations
+%- traces + visu?

 
 

-%%% brief history?
-%%% programming interfaces: MSG, SimDAG, SMPI

 %%% platforms
 %%% platforms

-%%% validation?
+%- describe resources and their interconnection, with their properties
+%- XML files
+
+%%% validation + refs
+
+\AG{Décrire SimGrid~\cite{casanova+legrand+quinson.2008.simgrid,SimGrid} (Arnaud)}

 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 \section{Simulation of the multisplitting method}
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 \section{Simulation of the multisplitting method}


@@ -216,8 +237,9 @@ Y_l = B_l - \displaystyle\sum_{\substack{m=1\\ m\neq l}}^{L}A_{lm}X_m
 \end{equation}
 is solved independently by a cluster and communications are required to update the right-hand side sub-vector $Y_l$, such that the sub-vectors $X_m$ represent the data dependencies between the clusters. As each sub-system (\ref{eq:4.1}) is solved in parallel by a cluster of processors, our multisplitting method uses an iterative method as an inner solver which is easier to parallelize and more scalable than a direct method. In this work, we use the parallel algorithm of GMRES method~\cite{ref1} which is one of the most used iterative method by many researchers. 
 
 \end{equation}
 is solved independently by a cluster and communications are required to update the right-hand side sub-vector $Y_l$, such that the sub-vectors $X_m$ represent the data dependencies between the clusters. As each sub-system (\ref{eq:4.1}) is solved in parallel by a cluster of processors, our multisplitting method uses an iterative method as an inner solver which is easier to parallelize and more scalable than a direct method. In this work, we use the parallel algorithm of GMRES method~\cite{ref1} which is one of the most used iterative method by many researchers. 
 

-\begin{algorithm}
-\caption{A multisplitting solver with GMRES method}
+\begin{figure}
+  %%% IEEE instructions forbid to use an algorithm environment here, use figure
+  %%% instead

 \begin{algorithmic}[1]
 \Input $A_l$ (sparse sub-matrix), $B_l$ (right-hand side sub-vector)
 \Output $X_l$ (solution sub-vector)\vspace{0.2cm}
 \begin{algorithmic}[1]
 \Input $A_l$ (sparse sub-matrix), $B_l$ (right-hand side sub-vector)
 \Output $X_l$ (solution sub-vector)\vspace{0.2cm}


@@ -238,10 +260,23 @@ is solved independently by a cluster and communications are required to update t
 \State \Return $X_l^k$
 \EndFunction
 \end{algorithmic}
 \State \Return $X_l^k$
 \EndFunction
 \end{algorithmic}

+\caption{A multisplitting solver with GMRES method}

 \label{algo:01}
 \label{algo:01}

-\end{algorithm}
+\end{figure}

 
 

-Algorithm~\ref{algo:01} shows the main key points of the multisplitting method to solve a large sparse linear system. This algorithm is based on an outer-inner iteration method where the parallel synchronous GMRES method is used to solve the inner iteration. It is executed in parallel by each cluster of processors. For all $l,m\in\{1,\ldots,L\}$, the matrices and vectors with the subscript $l$ represent the local data for cluster $l$, while $\{A_{lm}\}_{m\neq l}$ are off-diagonal matrices of sparse matrix $A$ and $\{X_m\}_{m\neq l}$ contain vector elements of solution $x$ shared with neighboring clusters. At every outer iteration $k$, asynchronous communications are performed between processors of the local cluster and those of distant clusters (lines $6$ and $7$ in Algorithm~\ref{algo:01}). The shared vector elements of the solution $x$ are exchanged by message passing using MPI non-blocking communication routines. 
+Algorithm on Figure~\ref{algo:01} shows the main key points of the
+multisplitting method to solve a large sparse linear system. This algorithm is
+based on an outer-inner iteration method where the parallel synchronous GMRES
+method is used to solve the inner iteration. It is executed in parallel by each
+cluster of processors. For all $l,m\in\{1,\ldots,L\}$, the matrices and vectors
+with the subscript $l$ represent the local data for cluster $l$, while
+$\{A_{lm}\}_{m\neq l}$ are off-diagonal matrices of sparse matrix $A$ and
+$\{X_m\}_{m\neq l}$ contain vector elements of solution $x$ shared with
+neighboring clusters. At every outer iteration $k$, asynchronous communications
+are performed between processors of the local cluster and those of distant
+clusters (lines $6$ and $7$ in Figure~\ref{algo:01}). The shared vector
+elements of the solution $x$ are exchanged by message passing using MPI
+non-blocking communication routines.

 
 \begin{figure}
 \centering
 
 \begin{figure}
 \centering