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%
-\usepackage{algorithmic}
+
% algorithmic.sty was written by Peter Williams and Rogerio Brito.
% This package provides an algorithmic environment fo describing algorithms.
% You can use the algorithmic environment in-text or within a figure
-
\begin{document}
%
% paper title
% author names and affiliations
% use a multiple column layout for up to three different
% affiliations
-\author{\IEEEauthorblockN{Michael Shell}
-\IEEEauthorblockA{School of Electrical and\\Computer Engineering\\
-Georgia Institute of Technology\\
-Atlanta, Georgia 30332--0250\\
-Email: http://www.michaelshell.org/contact.html}
-\and
-\IEEEauthorblockN{Homer Simpson}
-\IEEEauthorblockA{Twentieth Century Fox\\
-Springfield, USA\\
-Email: homer@thesimpsons.com}
+\author{\IEEEauthorblockN{Kahina Guidouche, Abderrahmane Sider }
+ \IEEEauthorblockA{Laboratoire LIMED\\
+ Faculté des sciences exactes\\
+ Université de Bejaia, 06000, Algeria\\
+Email: \{kahina.ghidouche,ar.sider\}@univ-bejaia.dz}
\and
-\IEEEauthorblockN{James Kirk\\ and Montgomery Scott}
-\IEEEauthorblockA{Starfleet Academy\\
-San Francisco, California 96678--2391\\
-Telephone: (800) 555--1212\\
-Fax: (888) 555--1212}}
+\IEEEauthorblockN{Lilia Ziane Khodja, Raphaël Couturier}
+\IEEEauthorblockA{FEMTO-ST Institute\\
+ University of Bourgogne Franche-Comte, France\\
+Email: zianekhodja.lilia@gmail.com\\ raphael.couturier@univ-fcomte.fr}}
% conference papers do not typically use \thanks and this command
% is locked out in conference mode. If really needed, such as for
show a quasi-linear speedup by using up-to 4 GPU devices compared to 1
GPU to find roots of polynomials of degree up-to 1.4
million. Moreover, other experiments show it is possible to find roots
-of polynomials of degree up to 5 millions.
+of polynomials of degree up-to 5 millions.
\end{abstract}
% no keywords
+\LZK{Faut pas mettre des keywords?}
Finding roots of polynomials of very high degrees arises in many complex problems in various domains such as algebra, biology or physics. A polynomial $p(x)$ in $\mathbb{C}$ in one variable $x$ is an algebraic expression in $x$ of the form:
\begin{equation}
-p(x) = \displaystyle\sum^n_{i=0}{a_ix^i},a_n\neq 0.
+p(x) = \displaystyle\sum^n_{i=0}{a_ix^i},a_n\neq 0,
\end{equation}
where $\{a_i\}_{0\leq i\leq n}$ are complex coefficients and $n$ is a high integer number. If $a_n\neq0$ then $n$ is called the degree of the polynomial. The root-finding problem consists in finding the $n$ different values of the unknown variable $x$ for which $p(x)=0$. Such values are called roots of $p(x)$. Let $\{z_i\}_{1\leq i\leq n}$ be the roots of polynomial $p(x)$, then $p(x)$ can be written as :
\begin{equation}
for a distributed memory one with MPI. They are able to compute the
roots of sparse polynomials of degree 10,000 in 116 seconds with
OpenMP and 135 seconds with MPI only by using 8 personal computers and
-2 communications per iteration. \RC{si on donne des temps faut donner
- le proc, comme c'est vieux à mon avis faut supprimer ca, votre avis?} The authors showed an interesting
+2 communications per iteration. The authors showed an interesting
speedup comparing to the sequential implementation which takes up-to
3,300 seconds to obtain same results.
-\LZK{``only by using 8 personal computers and 2 communications per iteration''. Pour MPI? et Pour OpenMP: Rep: c'est MPI seulement}
+\RC{si on donne des temps faut donner le proc, comme c'est vieux à mon avis faut supprimer ca, votre avis?}
+\LZK{Supprimons ces détails et mettons une référence s'il y en a une}
Very few work had been performed since then until the appearing of the Compute Unified Device Architecture (CUDA)~\cite{CUDA15}, a parallel computing platform and a programming model invented by NVIDIA. The computing power of GPUs (Graphics Processing Units) has exceeded that of traditional processors CPUs. However, CUDA adopts a totally new computing architecture to use the hardware resources provided by the GPU in order to offer a stronger computing ability to the massive data computing. Ghidouche et al.~\cite{Kahinall14} proposed an implementation of the Durand-Kerner method on a single GPU. Their main results showed that a parallel CUDA implementation is about 10 times faster than the sequential implementation on a single CPU for sparse polynomials of degree 48,000.
%\LZK{Cette partie est réécrite. \\ Sinon qu'est ce qui a été fait pour l'accuracy dans ce papier (Finding polynomial roots rapidly and accurately is the main objective of our work.)?}
%\LZK{Les contributions ne sont pas définies !!}
-In this paper we propose the parallelization of Ehrlich-Aberth method using two parallel programming paradigms OpenMP and MPI on CUDA multi-GPU platforms. Our CUDA/MPI and CUDA/OpenMP codes are the first implementations of Ehrlich-Aberth method with multiple GPUs for finding roots of polynomials. Our major contributions include:
-\LZK{Pourquoi la méthode Ehrlich-Aberth et pas autres? the Ehrlich-Aberth have very good convergence and it is suitable to be implemented in parallel computers.}
+%In this paper we propose the parallelization of Ehrlich-Aberth method using two parallel programming paradigms OpenMP and MPI on CUDA multi-GPU platforms. Our CUDA-MPI and CUDA-OpenMP codes are the first implementations of Ehrlich-Aberth method with multiple GPUs for finding roots of polynomials. Our major contributions include:
+%\LZK{Pourquoi la méthode Ehrlich-Aberth et pas autres? the Ehrlich-Aberth have very good convergence and it is suitable to be implemented in parallel computers.}
+In this paper we propose the parallelization of Ehrlich-Aberth method which has a good convergence and it is suitable to be implemented in parallel computers. We use two parallel programming paradigms OpenMP and MPI on CUDA multi-GPU platforms. Our CUDA-MPI and CUDA-OpenMP codes are the first implementations of Ehrlich-Aberth method with multiple GPUs for finding roots of polynomials. Our major contributions include:
+\LZK{J'ai ajouté une phrase pour justifier notre choix de la méthode Ehrlich-Aberth. A revérifier.}
\begin{itemize}
- \item An improvements for the Ehrlich-Aberth method using the exponential logarithm in order to be able to solve sparse and full polynomial of degree up to 1, 000, 000.\RC{j'ai envie de virer ca, car c'est pas la nouveauté dans ce papier}
- \item A parallel implementation of Ehrlich-Aberth method on single GPU with CUDA.\RC{idem}
+ %\item An improvements for the Ehrlich-Aberth method using the exponential logarithm in order to be able to solve sparse and full polynomial of degree up to 1, 000, 000.\RC{j'ai envie de virer ca, car c'est pas la nouveauté dans ce papier}
+ %\item A parallel implementation of Ehrlich-Aberth method on single GPU with CUDA.\RC{idem}
\item The parallel implementation of Ehrlich-Aberth algorithm on a multi-GPU platform with a shared memory using OpenMP API. It is based on threads created from the same system process, such that each thread is attached to one GPU. In this case the communications between GPUs are done by OpenMP threads through shared memory.
-\item The parallel implementation of Ehrlich-Aberth algorithm on a multi-GPU platform with a distributed memory using MPI API, such that each GPU is attached and managed by a MPI process. The GPUs exchange their data by message-passing communications. This latter approach is more used on clusters to solve very complex problems that are too large for traditional supercomputers, which are very expensive to build and run.
+\item The parallel implementation of Ehrlich-Aberth algorithm on a multi-GPU platform with a distributed memory using MPI API, such that each GPU is attached and managed by a MPI process. The GPUs exchange their data by message-passing communications.
\end{itemize}
-\LZK{Pas d'autres contributions possibles?: j'ai rajouté 2}
+This latter approach is more used on clusters to solve very complex problems that are too large for traditional supercomputers, which are very expensive to build and run.
+\LZK{Pas d'autres contributions possibles? J'ai supprimé les deux premiers points proposés précédemment.}
%This paper is organized as follows. In Section~\ref{sec2} we recall the Ehrlich-Aberth method. In section~\ref{sec3} we present EA algorithm on single GPU. In section~\ref{sec4} we propose the EA algorithm implementation on Multi-GPU for (OpenMP-CUDA) approach and (MPI-CUDA) approach. In sectioné\ref{sec5} we present our experiments and discus it. Finally, Section~\ref{sec6} concludes this paper and gives some hints for future research directions in this topic.}
-The paper is organized as follows. In Section~\ref{sec2} we present three different parallel programming models OpenMP, MPI and CUDA. In Section~\ref{sec3} we present the implementation of the Ehrlich-Aberth algorithm on a single GPU. In Section~\ref{sec4} we present the parallel implementations of the Ehrlich-Aberth algorithm on Multi-GPU using the OpenMP and MPI approaches. In section\ref{sec5} we present our experiments and discus it. Finally, Section~\ref{sec6} concludes this paper and gives some hints for future research directions in this topic.
+The paper is organized as follows. In Section~\ref{sec2} we present three different parallel programming models OpenMP, MPI and CUDA. In Section~\ref{sec3} we present the implementation of the Ehrlich-Aberth algorithm on a single GPU. In Section~\ref{sec4} we present the parallel implementations of the Ehrlich-Aberth algorithm on multiple GPUs using the OpenMP and MPI approaches. In section~\ref{sec5} we present our experiments and discuss them. Finally, Section~\ref{sec6} concludes this paper and gives some hints for future research directions in this topic.
%\LZK{A revoir toute cette organization: je viens de la revoir}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
The Ehrlich-Aberth method is a simultaneous method~\cite{Aberth73} using the following iteration
\begin{equation}
\label{Eq:EA1}
-EA: z^{k+1}_{i}=z_{i}^{k}-\frac{\frac{p(z_{i}^{k})}{p'(z_{i}^{k})}}
-{1-\frac{p(z_{i}^{k})}{p'(z_{i}^{k})}\sum_{j=1,j\neq i}^{j=n}{\frac{1}{(z_{i}^{k}-z_{j}^{k})}}}, i=1,. . . .,n
+z^{k+1}_{i}=z_{i}^{k}-\frac{\frac{p(z_{i}^{k})}{p'(z_{i}^{k})}}
+{1-\frac{p(z_{i}^{k})}{p'(z_{i}^{k})}\sum_{j=1,j\neq i}^{j=n}{\frac{1}{(z_{i}^{k}-z_{j}^{k})}}}, i=1,\ldots,n
\end{equation}
-This methods contains 4 steps. The first step consists of the initial
-approximations of all the roots of the polynomial. The second step
-initializes the solution vector $Z$ using the Guggenheimer
-method~\cite{Gugg86} to ensure the distinction of the initial vector
-roots. In step 3, the iterative function based on the Newton's
-method~\cite{newt70} and Weiestrass operator~\cite{Weierstrass03} is
-applied. With this step the computation of roots will converge,
-provided that all roots are different.
-
-
-In order to stop the iterative function, a stop condition is
-applied. This condition checks that all the root modules are lower
-than a fixed value $\xi$.
+This method contains 4 steps. The first step consists in the initializing the polynomial. The second step initializes the solution vector $Z$ using the Guggenheimer method~\cite{Gugg86} to ensure that initial roots are all distinct from each other. In step 3, the iterative function based on the Newton's method~\cite{newt70} and Weiestrass operator~\cite{Weierstrass03} is applied. In our case, the Ehrlich-Aberth is applied as in~(\ref{Eq:EA1}). Iterations of the Ehrlich-Aberth method will converge to the roots of the considered polynomial. In order to stop the iterative function, a stop condition is applied, this is the 4th step. This condition checks that all the root modules are lower than a fixed value $\epsilon$.
\begin{equation}
\label{eq:Aberth-Conv-Cond}
-\forall i \in [1,n];\vert\frac{z_{i}^{k}-z_{i}^{k-1}}{z_{i}^{k}}\vert<\xi
+\forall i\in[1,n],~\vert\frac{z_i^k-z_i^{k-1}}{z_i^k}\vert<\epsilon
\end{equation}
+
\subsection{Improving Ehrlich-Aberth method}
-With high degree polynomials, the Ehrlich-Aberth method suffers from
-floating point overflows due to the mantissa of floating points
-representations. This induces errors in the computation of $p(z)$ when
-$z$ is large.
+With high degree polynomials, the Ehrlich-Aberth method suffers from floating point overflows due to the mantissa of floating points representations. This induces errors in the computation of $p(z)$ when $z$ is large.
%Experimentally, it is very difficult to solve polynomials with the Ehrlich-Aberth method and have roots which except the circle of unit, represented by the radius $r$ evaluated as:
function by using the logarithm and the exponential of a complex and
we propose a new version of the Ehrlich-Aberth method. This method
allows us to exceed the computation of the polynomials of degree
-100,000 and to reach a degree up to more than 1,000,000. This new
-version of the Ehrlich-Aberth method with exponential and logarithm is
-defined as follows:
+100,000 and to reach a degree up to more than 1,000,000. The reformulation of the iteration~(\ref{Eq:EA1}) of the Ehrlich-Aberth method with exponential and logarithm is defined as follows, for $i=1,\dots,n$:
\begin{equation}
\label{Log_H2}
-z^{k+1}_{i}=z_{i}^{k}-\exp \left(\ln \left(
-p(z_{i}^{k})\right)-\ln\left(p'(z^{k}_{i})\right)- \ln\left(1-Q(z^{k}_{i})\right)\right),
+z^{k+1}_i = z_i^k - \exp(\ln(p(z_i^k)) - \ln(p'(z^k_i)) - \ln(1-Q(z^k_i))),
\end{equation}
where:
-\begin{eqnarray}
+\begin{equation}
\label{Log_H1}
-Q(z^{k}_{i})=\exp\left( \ln (p(z^{k}_{i}))-\ln(p'(z^{k}_{i}))+\ln \left(
-\sum_{i\neq j}^{n}\frac{1}{z^{k}_{i}-z^{k}_{j}}\right)\right) \nonumber \\
-i=1,...,n
-\end{eqnarray}
+Q(z^k_i) = \exp(\ln(p(z^k_i)) - \ln(p'(z^k_i)) + \ln(\sum_{i\neq j}^n\frac{1}{z^k_i-z^k_j})).
+\end{equation}
%We propose to use the logarithm and the exponential of a complex in order to compute the power at a high exponent.
-Using the logarithm and the exponential operators, we can replace any multiplications and divisions with additions and subtractions. Consequently, computations manipulate lower absolute values~\cite{Karimall98}.
+Using the logarithm and the exponential operators, we can replace any multiplications and divisions with additions and subtractions. Consequently, computations manipulate lower values in absolute values~\cite{Karimall98}.
%This problem was discussed earlier in~\cite{Karimall98} for the Durand-Kerner method. The authors
%propose to use the logarithm and the exponential of a complex in order to compute the power at a high exponent. Using the logarithm and the exponential operators, we can replace any multiplications and divisions with additions and subtractions. Consequently, computations manipulate lower absolute values and the roots for large polynomial degrees can be looked for successfully~\cite{Karimall98}.
-\subsection{Ehrlich-Aberth parallel implementation on CUDA}
+\subsection{The Ehrlich-Aberth parallel implementation on CUDA}
%We introduced three paradigms of parallel programming.
Our objective consists in implementing a root finding polynomial
controlling the various GPUs is to use as many threads or processes as
GPU devices. We can choose the GPU index based on the identifier of
OpenMP thread or the rank of the MPI process. Both approaches will be
-investigated.
+investigated. \LZK{Répétition! Le même texte est déjà écrit comme
+ intro dans la section II. Sinon ici on parle seulement de
+ l'implémentation cuda sans mpi et openmp! \RC{Je suis d'accord à
+ revoir après, quand les 2 parties suivantes seront plus stables}}
-Like any parallel code, a GPU parallel implementation first requires
-to determine the sequential tasks and the parallelizable parts of the
-sequential version of the program/algorithm. In our case, all the
-operations that are easy to execute in parallel must be made by the
-GPU to accelerate the execution of the application, like the step 3
-and step 4. On the other hand, all the sequential operations and the
-operations that have data dependencies between threads or recursive
-computations must be executed by only one CUDA or CPU thread (step 1
-and step 2). Initially, we specify the organization of parallel
-threads, by specifying the dimension of the grid Dimgrid, the number
-of blocks per grid DimBlock and the number of threads per block.
+Like any parallel code, a GPU parallel implementation first requires to determine the sequential code and the data-parallel operations of a algorithm. In fact, all the operations that are easy to execute in parallel must be made by the GPU to accelerate the execution, like the steps 3 and 4. On the other hand, all the sequential operations and the operations that have data dependencies between CUDA threads or recursive computations must be executed by only one CUDA thread or a CPU thread (the steps 1 and 2).\LZK{La méthode est déjà mal présentée, dans ce cas c'est encore plus difficile de comprendre que représentent ces différentes étapes!} Initially, we specify the organization of parallel threads by specifying the dimension of the grid \verb+Dimgrid+, the number of blocks per grid \verb+DimBlock+ and the number of threads per block.
-The code is organized kernels which are part of code that are run on
-GPU devices. For step 3, there are two kernels, the first named
-\textit{save} is used to save vector $Z^{K-1}$ and the second one is
+The code is organized as kernels which are parts of code that are run on GPU devices. For step 3, there are two kernels, the first is named \textit{save} is used to save vector $Z^{K-1}$ and the second one is
named \textit{update} and is used to update the $Z^{K}$ vector. For
step 4, a kernel tests the convergence of the method. In order to
compute the function H, we have two possibilities: either to use the
CUDA running threads like threads on a CPU host. In the following
paragraph Algorithm~\ref{alg1-cuda} shows the GPU parallel
implementation of Ehrlich-Aberth method.
+\LZK{Vaut mieux expliquer l'implémentation en faisant référence à l'algo séquentiel que de parler des différentes steps.}
-\begin{enumerate}
-\begin{algorithm}[htpb]
-\label{alg1-cuda}
+%\begin{algorithm}[htpb]
+%\label{alg1-cuda}
%\LinesNumbered
-\caption{CUDA Algorithm to find roots with the Ehrlich-Aberth method}
-
-\KwIn{$Z^{0}$ (Initial root's vector), $\varepsilon$ (Error tolerance
- threshold), P (Polynomial to solve), Pu (Derivative of P), $n$ (Polynomial degrees), $\Delta z_{max}$ (Maximum value of stop condition)}
-
-\KwOut {$Z$ (Solution root's vector), $ZPrec$ (Previous solution root's vector)}
+%\SetAlgoNoLine
+%\caption{CUDA Algorithm to find polynomial roots with the Ehrlich-Aberth method}
+%\KwIn{$Z^{0}$ (Initial vector of roots), $\epsilon$ (Error tolerance threshold), P (Polynomial to solve), Pu (Derivative of P), $n$ (Polynomial degree), $\Delta z_{max}$ (Maximum value of stop condition)}
+%\KwOut{$Z$ (Solution vector of roots)}
%\BlankLine
-\item Initialization of P\;
-\item Initialization of Pu\;
-\item Initialization of the solution vector $Z^{0}$\;
-\item Allocate and copy initial data to the GPU global memory\;
-\item k=0\;
-\item \While {$\Delta z_{max} > \epsilon$}{
-\item Let $\Delta z_{max}=0$\;
-\item $ kernel\_save(ZPrec,Z)$\;
-\item k=k+1\;
-\item $ kernel\_update(Z,P,Pu)$\;
-\item $kernel\_testConverge(\Delta z_{max},Z,ZPrec)$\;
+%Initialization of P\;
+%Initialization of Pu\;
+%Initialization of the solution vector $Z^{0}$\;
+%Allocate and copy initial data to the GPU global memory\;
+%\While {$\Delta z_{max} > \epsilon$}{
+% $ ZPres=kernel\_save(Z)$\;
+% $ Z=kernel\_update(Z,P,Pu)$\;
+% $\Delta z_{max}=kernel\_testConv(Z,ZPrec)$\;
+
+%}
+%Copy results from GPU memory to CPU memory\;
+%\end{algorithm}
+\begin{algorithm}[htpb]
+\LinesNumbered
+\SetAlgoNoLine
+\caption{Finding roots of polynomials with the Ehrlich-Aberth method on a GPU}
+\KwIn{$n$ (polynomial's degree), $\epsilon$ (tolerance threshold)}
+\KwOut{$Z$ (solution vector of roots)}
+Initialize the polynomial $P$ and its derivative $P'$\;
+Set the initial values of vector $Z$\;
+Copy $P$, $P'$ and $Z$ from CPU to GPU\;
+\While{\emph{not convergence}}{
+ $Z^{prev}$ = KernelSave($Z,n$)\;
+ $Z$ = KernelUpdate($P,P',Z^{prev},n$)\;
+ $\Delta Z$ = KernelComputeError($Z,Z^{prev},n$)\;
+ $\Delta Z_{max}$ = CudaMaxFunction($\Delta Z,n$)\;
+ TestConvergence($\Delta Z_{max},\epsilon$)\;
}
-\item Copy results from GPU memory to CPU memory\;
+Copy $Z$ from GPU to CPU\;
+\label{alg1-cuda}
+\RC{Si l'algo vous convient, il faudrait le détailler précisément\LZK{J'ai modifié l'algo. Sinon, est ce qu'on doit mettre en paramètre $Z^{prev}$ ou $Z$ tout court (dans le cas où on exploite l'asynchronisme des threads cuda!) pour le Kernel\_Update? }}
\end{algorithm}
-\end{enumerate}
-~\\
-\RC{Au final, on laisse ce code, on l'explique, si c'est kahina qui
- rajoute l'explication, il faut absolument ajouter \KG{dfsdfsd}, car
- l'anglais sera à relire et je ne veux pas tout relire... }
\section{The EA algorithm on Multiple GPUs}
\label{sec4}
-\subsection{M-GPU : an OpenMP-CUDA approach}
+\subsection{an OpenMP-CUDA approach}
Our OpenMP-CUDA implementation of EA algorithm is based on the hybrid
-OpenMP and CUDA programming model. All the data
-are shared with OpenMP amoung all the OpenMP threads. The shared data
-are the solution vector $Z$, the polynomial to solve $P$, and the
-error vector $\Delta z$. The number of OpenMP threads is equal to the
-number of GPUs, each OpenMP thread binds to one GPU, and it controls a
-part of the shared memory. More precisely each OpenMP thread owns of
-the vector Z, that is $(n/num\_gpu)$ roots where $n$ is the
-polynomial's degree and $num\_gpu$ the total number of available
-GPUs. Then all GPUs will have a grid of computation organized
+OpenMP and CUDA programming model. All the data are shared with
+OpenMP amoung all the OpenMP threads. The shared data are the solution
+vector $Z$, the polynomial to solve $P$, and the error vector $\Delta
+z$. The number of OpenMP threads is equal to the number of GPUs, each
+OpenMP thread binds to one GPU, and it controls a part of the shared
+memory. More precisely each OpenMP thread will be responsible to
+update its owns part of the vector Z. This part is call $Z_{loc}$ in
+the following. Then all GPUs will have a grid of computation organized
according to the device performance and the size of data on which it
runs the computation kernels.
To compute one iteration of the EA method each GPU performs the
-followings steps. First roots are shared with OpenMP. Each thread
-starts by copying all the previous roots inside its GPU. Then each GPU
-will compute an iteration of the EA method on its own roots. For that
-all the other roots are used. At the end of an iteration, the updated
-roots are copied from the GPU to the CPU. The convergence is checked
-on the new roots. Finally each CPU will update its own roots in the
-shared memory arrays containing all the roots.
+followings steps. First roots are shared with OpenMP and the
+computation of the local size for each GPU is performed (lines 5-7 in
+Algo\ref{alg2-cuda-openmp}). Each thread starts by copying all the
+previous roots inside its GPU (line 9). Then each GPU will copy the
+previous roots (line 10) and it will compute an iteration of the EA
+method on its own roots (line 11). For that all the other roots are
+used. The convergence is checked on the new roots (line 12). At the end
+of an iteration, the updated roots are copied from the GPU to the
+CPU (line 14) by direcly updating its own roots in the shared memory
+arrays containing all the roots.
%In principle a grid is set by two parameter DimGrid, the number of block per grid, DimBloc: the number of threads per block. The following schema shows the architecture of (CUDA,OpenMP).
%% roots sufficiently converge.
-%% \begin{enumerate}
-%% \begin{algorithm}[htpb]
-%% \label{alg2-cuda-openmp}
-%% %\LinesNumbered
-%% \caption{CUDA-OpenMP Algorithm to find roots with the Ehrlich-Aberth method}
-
-%% \KwIn{$Z^{0}$ (Initial root's vector), $\varepsilon$ (Error tolerance
-%% threshold), P (Polynomial to solve), Pu (Derivative of P), $n$ (Polynomial degree), $\Delta z$ ( Vector of errors for stop condition), $num_gpus$ (number of OpenMP threads/ Number of GPUs), $Size$ (number of roots)}
-
-%% \KwOut {$Z$ ( Root's vector), $ZPrec$ (Previous root's vector)}
-
-%% \BlankLine
-
-%% \item Initialization of P\;
-%% \item Initialization of Pu\;
-%% \item Initialization of the solution vector $Z^{0}$\;
-%% \verb=omp_set_num_threads(num_gpus);=
-%% \verb=#pragma omp parallel shared(Z,$\Delta$ z,P);=
-%% \verb=cudaGetDevice(gpu_id);=
-%% \item Allocate and copy initial data from CPU memory to the GPU global memories\;
-%% \item index= $Size/num\_gpus$\;
-%% \item k=0\;
-%% \While {$error > \epsilon$}{
-%% \item Let $\Delta z=0$\;
-%% \item $ kernel\_save(ZPrec,Z)$\;
-%% \item k=k+1\;
-%% \item $ kernel\_update(Z,P,Pu,index)$\;
-%% \item $kernel\_testConverge(\Delta z[gpu\_id],Z,ZPrec)$\;
-%% %\verb=#pragma omp barrier;=
-%% \item error= Max($\Delta z$)\;
-%% }
-
-%% \item Copy results from GPU memories to CPU memory\;
-%% \end{algorithm}
-%% \end{enumerate}
-%% ~\\
-%% \RC{C'est encore pire ici, on ne voit pas les comm CPU <-> GPU }
-
-
-\subsection{Multi-GPU : an MPI-CUDA approach}
+%% \begin{algorithm}[h]
+%% \label{alg2-cuda-openmp}
+%% \LinesNumbered
+%% \SetAlgoNoLine
+%% \caption{CUDA-OpenMP Algorithm to find roots with the Ehrlich-Aberth method}
+
+%% \KwIn{$Z^{0}$ (Initial root's vector), $\varepsilon$ (Error tolerance
+%% threshold), P (Polynomial to solve), Pu (Derivative of P), $n$ (Polynomial degree), $\Delta z$ ( Vector of errors for stop condition), $num\_gpus$ (number of OpenMP threads/ Number of GPUs), $Size$ (number of roots)}
+
+%% \KwOut {$Z$ ( Root's vector), $ZPrec$ (Previous root's vector)}
+
+%% \BlankLine
+
+%% Initialization of P\;
+%% Initialization of Pu\;
+%% Initialization of the solution vector $Z^{0}$\;
+%% Start of a parallel part with OpenMP (Z, $\Delta z$, P are shared variables)\;
+%% gpu\_id=cudaGetDevice()\;
+%% Allocate memory on GPU\;
+%% Compute local size and offet according to gpu\_id\;
+%% \While {$error > \epsilon$}{
+%% copy Z from CPU to GPU\;
+%% $ ZPrec_{loc}=kernel\_save(Z_{loc})$\;
+%% $ Z_{loc}=kernel\_update(Z,P,Pu)$\;
+%% $\Delta z[gpu\_id] = kernel\_testConv(Z_{loc},ZPrec_{loc})$\;
+%% $ error= Max(\Delta z)$\;
+%% copy $Z_{loc}$ from GPU to Z in CPU
+%% }
+%%\end{algorithm}
+
+\begin{algorithm}[htpb]
+\LinesNumbered
+\SetAlgoNoLine
+\caption{Finding roots of polynomials with the Ehrlich-Aberth method on multiple GPUs using OpenMP}
+\KwIn{$n$ (polynomial's degree), $\epsilon$ (tolerance threshold), $ngpu$ (number of GPUs)}
+\KwOut{$Z$ (solution vector of roots)}
+Initialize the polynomial $P$ and its derivative $P'$\;
+Set the initial values of vector $Z$\;
+Start of a parallel part with OpenMP ($Z$, $\Delta Z$, $\Delta Z_{max}$, $P$ are shared variables)\;
+$id_{gpu}$ = cudaGetDevice()\;
+$n_{loc}$ = $n/ngpu$ (local size)\;
+%$idx$ = $id_{gpu}\times n_{loc}$ (local offset)\;
+Copy $P$, $P'$ from CPU to GPU\;
+\While{\emph{not convergence}}{
+ Copy $Z$ from CPU to GPU\;
+ $Z^{prev}$ = KernelSave($Z,n$)\;
+ $Z_{loc}$ = KernelUpdate($P,P',Z^{prev},n_{loc}$)\;
+ $\Delta Z_{loc}$ = KernelComputeError($Z_{loc},Z^{prev}_{loc},n_{loc}$)\;
+ $\Delta Z_{max}[id_{gpu}]$ = CudaMaxFunction($\Delta Z_{loc},n_{loc}$)\;
+ Copy $Z_{loc}$ from GPU to $Z$ in CPU\;
+ $max$ = MaxFunction($\Delta Z_{max},ngpu$)\;
+ TestConvergence($max,\epsilon$)\;
+}
+\label{alg2-cuda-openmp}
+\LZK{J'ai modifié l'algo. Le $P$ est mis shared. Qu'en est-il pour $P'$?}
+\end{algorithm}
+
+
+
+
+
+\subsection{an MPI-CUDA approach}
%\begin{figure}[htbp]
%\centering
% \includegraphics[angle=-90,width=0.2\textwidth]{MPI-CUDA}
Since a GPU works only on data already allocated in its memory, all local input data, $Z_{k}$, $ZPrec$ and $\Delta z_{k}$, must be transferred from CPU memories to the corresponding GPU memories. Afterwards, the same EA algorithm (Algorithm \ref{alg1-cuda}) is run by all processes but on different polynomial subset of roots $ p(x)_{k}=\sum_{i=1}^{n} a_{i}x^{i}, k=1,...,p$. Each MPI process executes the loop \verb=(While(...)...do)= containing the CUDA kernels but each MPI process computes only its own portion of the roots according to the rule ``''owner computes``''. The local range of roots is indicated with the \textit{index} variable initialized at (line 5, Algorithm \ref{alg2-cuda-mpi}), and passed as an input variable to $kernel\_update$ (line 10, Algorithm \ref{alg2-cuda-mpi}). After each iteration, MPI processes synchronize (\verb=MPI_Allreduce= function) by a reduction on $\Delta z_{k}$ in order to compute the maximum error related to the stop condition. Finally, processes copy the values of new computed roots from GPU memories to CPU memories, then communicate their results to other processes with \verb=MPI_Alltoall= broadcast. If the stop condition is not verified ($error > \epsilon$) then processes stay withing the loop \verb= while(...)...do= until all the roots sufficiently converge.
-%% \begin{enumerate}
-%% \begin{algorithm}[htpb]
-%% \label{alg2-cuda-mpi}
-%% %\LinesNumbered
-%% \caption{CUDA-MPI Algorithm to find roots with the Ehrlich-Aberth method}
-
-%% \KwIn{$Z^{0}$ (Initial root's vector), $\varepsilon$ (Error tolerance
-%% threshold), P (Polynomial to solve), Pu (Derivative of P), $n$ (Polynomial degrees), $\Delta z$ ( error of stop condition), $num_gpus$ (number of MPI processes/ number of GPUs), Size (number of roots)}
-
-%% \KwOut {$Z$ (Solution root's vector), $ZPrec$ (Previous solution root's vector)}
-
-%% \BlankLine
-%% \item Initialization of P\;
-%% \item Initialization of Pu\;
-%% \item Initialization of the solution vector $Z^{0}$\;
-%% \item Allocate and copy initial data from CPU memories to GPU global memories\;
-%% \item $index= Size/num_gpus$\;
-%% \item k=0\;
-%% \While {$error > \epsilon$}{
-%% \item Let $\Delta z=0$\;
-%% \item $kernel\_save(ZPrec,Z)$\;
-%% \item k=k+1\;
-%% \item $kernel\_update(Z,P,Pu,index)$\;
-%% \item $kernel\_testConverge(\Delta z,Z,ZPrec)$\;
-%% \item ComputeMaxError($\Delta z$,error)\;
-%% \item Copy results from GPU memories to CPU memories\;
-%% \item Send $Z[id]$ to all processes\;
-%% \item Receive $Z[j]$ from every other process j\;
-%% }
-%% \end{algorithm}
-%% \end{enumerate}
-%% ~\\
-
-%% \RC{ENCORE ENCORE PIRE}
+\begin{algorithm}[htpb]
+\label{alg2-cuda-mpi}
+%\LinesNumbered
+\caption{CUDA-MPI Algorithm to find roots with the Ehrlich-Aberth method}
+
+\KwIn{$Z^{0}$ (Initial root's vector), $\varepsilon$ (Error tolerance
+ threshold), P (Polynomial to solve), Pu (Derivative of P), $n$ (Polynomial degrees), $\Delta z$ ( error of stop condition), $num_gpus$ (number of MPI processes/ number of GPUs), Size (number of roots)}
+
+\KwOut {$Z$ (Solution root's vector), $ZPrec$ (Previous solution root's vector)}
+
+\BlankLine
+Initialization of P\;
+Initialization of Pu\;
+Initialization of the solution vector $Z^{0}$\;
+Distribution of Z\;
+Allocate memory to GPU\;
+\While {$error > \epsilon$}{
+copy Z from CPU to GPU\;
+$ZPrec_{loc}=kernel\_save(Z_{loc})$\;
+$Z_{loc}=kernel\_update(Z,P,Pu)$\;
+$\Delta z=kernel\_testConv(Z_{loc},ZPrec_{loc})$\;
+$error=MPI\_Reduce(\Delta z)$\;
+Copy $Z_{loc}$ from GPU to CPU\;
+$Z=MPI\_AlltoAll(Z_{loc})$\;
+}
+\end{algorithm}
+
\section{Experiments}
\label{sec5}
\begin{figure}[htbp]
\centering
\includegraphics[angle=-90,width=0.5\textwidth]{Sparse_omp}
-\caption{Execution time in seconds of the Ehrlich-Aberth method to solve sparse polynomials on multiple GPUs.}
+\caption{Execution time in seconds of the Ehrlich-Aberth method to
+ solve sparse polynomials on multiple GPUs with CUDA-OpenMP.}
\label{fig:01}
\end{figure}
\begin{figure}[htbp]
\centering
\includegraphics[angle=-90,width=0.5\textwidth]{Full_omp}
-\caption{Execution time in seconds of the Ehrlich-Aberth method to solve full polynomials on multiple GPUs}
+\caption{Execution time in seconds of the Ehrlich-Aberth method to
+ solve full polynomials on multiple GPUs with CUDA-OpenMP.}
\label{fig:02}
\end{figure}
\begin{figure}[htbp]
\centering
\includegraphics[angle=-90,width=0.5\textwidth]{Sparse_mpi}
-\caption{Execution time in seconds of the Ehrlich-Aberth method to solve sparse polynomials on multiple GPUs.}
+\caption{Execution time in seconds of the Ehrlich-Aberth method to
+ solve sparse polynomials on multiple GPUs with CUDA-MPI.}
\label{fig:03}
\end{figure}
Figure~\ref{fig:03} shows the execution times of te EA algorithm,
\begin{figure}[htbp]
\centering
\includegraphics[angle=-90,width=0.5\textwidth]{Full_mpi}
-\caption{Execution times in seconds of the Ehrlich-Aberth method for full polynomials on GPUs using the Multi-GPU}
+\caption{Execution times in seconds of the Ehrlich-Aberth method for
+ full polynomials on multiple GPUs with CUDA-MPI.}
\label{fig:04}
\end{figure}
In Figure~\ref{fig:04}, we can also observe that the CUDA-MPI approach
is also efficient to solve full polynimails on multiple GPUs.
-\subsection{Comparing the CUDA-OpenMP approach and the CUDA-MPI approach}
-In the previuos section we saw that both approches are very effective in reducing execution time for sparse as well as full polynomials. At this stage, the interesting question is which approach is better. In the fellowing, we present appropriate experiments comparing the two Multi-GPU approaches to answer the question.
+\subsection{Comparison of the CUDA-OpenMP and the CUDA-MPI approaches}
+
+In the previuos section we saw that both approches are very effecient
+to reduce the execution times the sparse and full polynomials. In
+this section we try to compare these two approaches.
\subsubsection{Solving sparse polynomials}
In this experiment three sparse polynomials of size 200K, 800K and 1,4M are investigated.
\begin{figure}[htbp]
\centering
\includegraphics[angle=-90,width=0.5\textwidth]{Sparse}
-\caption{Execution time for solving sparse polynomials of three distinct sizes on multiple GPUs using MPI and OpenMP approaches using Ehrlich-Aberth}
+\caption{Execution times to solvs sparse polynomials of three
+ distinct sizes on multiple GPUs using MPI and OpenMP with the
+ Ehrlich-Aberth method}
\label{fig:05}
\end{figure}
-In Figure~\ref{fig:05} there two curves for each polynomial size : one for the MPI-CUDA and another for the OpenMP. We can see that the results are similar between OpenMP and MPI for the polynomials size of 200K. For the size of 800K, the MPI version is a little slower than the OpenMP approach but for the 1,4 millions size, there is a slight advantage for the MPI version.
+In Figure~\ref{fig:05} there is one curve for CUDA-MPI and another one
+for CUDA-OpenMP. We can see that the results are quite similar between
+OpenMP and MPI for the polynomials size of 200K. For the size of 800K,
+the MPI version is a little bit slower than the OpenMP approach but for
+the 1,4 millions size, there is a slight advantage for the MPI
+version.
\subsubsection{Solving full polynomials}
\begin{figure}[htbp]
In Figure~\ref{fig:06}, we can see that when it comes to full polynomials, both approaches are almost equivalent.
\subsubsection{Solving sparse and full polynomials of the same size with CUDA-MPI}
-In this experiment we compare the execution time of the EA algorithm according to the number of GPUs for solving sparse and full polynomials on Multi-GPU using MPI. We chose three sparse and full polynomials of size 200K, 800K and 1,4M.
+
+In this experiment we compare the execution time of the EA algorithm
+according to the number of GPUs to solve sparse and full
+polynomials on multiples GPUs using MPI. We chose three sparse and full
+polynomials of size 200K, 800K and 1,4M.
\begin{figure}[htbp]
\centering
\includegraphics[angle=-90,width=0.5\textwidth]{MPI}
-\caption{Execution time for solving sparse and full polynomials of three distinct sizes on multiple GPUs using MPI}
+\caption{Execution times to solve sparse and full polynomials of three distinct sizes on multiple GPUs using MPI.}
\label{fig:07}
\end{figure}
-in figure ~\ref{fig:07} we can see that CUDA-MPI can solve sparse and full polynomials of high degrees, the execution time with sparse polynomial are very low comparing to full polynomials. with sparse polynomials the number of monomial are reduce, consequently the number of operation are reduce than the execution time decrease.
+In Figure~\ref{fig:07} we can see that CUDA-MPI can solve sparse and
+full polynomials of high degrees, the execution times with sparse
+polynomial are very low compared to full polynomials. With sparse
+polynomials the number of monomials is reduced, consequently the number
+of operations is reduced and the execution time decreases.
\subsubsection{Solving sparse and full polynomials of the same size with CUDA-OpenMP}
\label{fig:08}
\end{figure}
-Figure ~\ref{fig:08} shows the impact of sparsity on the effectiveness of the CUDA-OpenMP approach. We can see that the impact fellows the same pattern, a difference in execution time in favor of the sparse polynomials.
-%SIDER : il faut une explication ici. je ne vois pas de prime abords, qu'est-ce qui engendre cette différence, car quelques soient les coefficients nulls ou non nulls, c'est toutes les racines qui sont calculées qu'elles soient similaires ou non (degrés de multiplicité).
-\subsection{Scalability of the EA method on Multi-GPU to solve very high degree polynomials}
-These experiments report the execution time according to the degrees of polynomials ranging from 1,000,000 to 5,000,000 for both approaches with sparse and full polynomials.
+Figure ~\ref{fig:08} shows the impact of sparsity on the effectiveness of the CUDA-OpenMP approach. We can see that the impact follows the same pattern, a difference in execution time in favor of the sparse polynomials.
+
+\subsection{Scalability of the EA method on multiple GPUs to solve very high degree polynomials}
+These experiments report the execution times of the EA method for
+sparse and full polynomials ranging from 1,000,000 to 5,000,000.
\begin{figure}[htbp]
\centering
\includegraphics[angle=-90,width=0.5\textwidth]{big}
\caption{Execution times in seconds of the Ehrlich-Aberth method for solving full polynomials of high degree on 4 GPUs for sizes ranging from 1M to 5M}
\label{fig:09}
\end{figure}
-In figure ~\ref{fig:09} we can see that both approaches are scalable and can solve very high degree polynomials. With full polynomial both approaches give interestingly very similar results. For the sparse case however, there are a noticeable difference in favour of MPI when the degree is above 4M. Between 1M and 3M, the OMP approach is more effective and under 1M degree, OMP and MPI approaches are almost equivalent.
+In Figure~\ref{fig:09} we can see that both approaches are scalable
+and can solve very high degree polynomials. In addition, with full polynomial as well as sparse ones, both
+approaches give very similar results.
+
+%SIDER JE viens de virer \c ca For sparse polynomials here are a noticeable difference in favour of MPI when the degree is
+%above 4 millions. Between 1 and 3 millions, OpenMP is more effecient.
+%Under 1 million, OpenMPI and MPI are almost equivalent.
%SIDER : il faut une explication sur les différences ici aussi.
\section{Conclusion}
\label{sec6}
-In this paper, we have presented a parallel implementation of Ehrlich-Aberth algorithm for solving full and sparse polynomials, on single GPU with CUDA and on multiple GPUs using two parallel paradigms : shared memory with OpenMP and distributed memory with MPI. These architectures were addressed by a CUDA-OpenMP approach and CUDA-MPI approach, respectively.
-The experiments show that, using parallel programming model like (OpenMP, MPI), we can efficiently manage multiple graphics cards to work together to solve the same problem and accelerate the parallel execution with 4 GPUs and solve a polynomial of degree 1,000,000, four times faster than on single GPU, that is a quasi-linear speedup.
+In this paper, we have presented a parallel implementation of
+Ehrlich-Aberth algorithm to solve full and sparse polynomials, on
+single GPU with CUDA and on multiple GPUs using two parallel
+paradigms: shared memory with OpenMP and distributed memory with
+MPI. These architectures were addressed by a CUDA-OpenMP approach and
+CUDA-MPI approach, respectively. Experiments show that, using
+parallel programming model like (OpenMP, MPI). We can efficiently
+manage multiple graphics cards to solve the same
+problem and accelerate the parallel execution with 4 GPUs and solve a
+polynomial of degree up to 5,000,000, four times faster than on single
+GPU.
%In future, we will evaluate our parallel implementation of Ehrlich-Aberth algorithm on other parallel programming model
-Our next objective is to extend the model presented here at clusters of nodes featuring multiple GPUs, with a three-level scheme: inter-node communication via MPI processes (distributed memory), management of multi-GPU node by OpenMP threads (shared memory).
+Our next objective is to extend the model presented here with clusters
+of GPU nodes, with a three-level scheme: inter-node communication via
+MPI processes (distributed memory), management of multi-GPU node by
+OpenMP threads (shared memory).
%present a communication approach between multiple GPUs. The comparison between MPI and OpenMP as GPUs controllers shows that these
%solutions can effectively manage multiple graphics cards to work together
% use section* for acknowledgment
\section*{Acknowledgment}
+Computations have been performed on the supercomputer facilities of
+the Mésocentre de calcul de Franche-Comté. We also would like to thank
+Nvidia for hardware donation under CUDA Research Center 2014.
-The authors would like to thank...
