From: Kahina <kahina@kahina-VPCEH3K1E.(none)>
Date: Wed, 9 Dec 2015 14:30:04 +0000 (+0100)
Subject: je viens de faire le premier commit
X-Git-Url: https://bilbo.iut-bm.univ-fcomte.fr/and/gitweb/kahina_paper2.git/commitdiff_plain/bd5ca64bdf64d005b0539d7b3846880be382ac67?ds=inline;hp=9270158e4abcd7265744b7531dcc5869c92e09b2

je viens de faire le premier commit
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+%% bare_conf.tex
+%% V1.4b
+%% 2015/08/26
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+% (Unless specifically asked to do so by the journal or conference you plan
+% to submit to, of course. )
+
+
+% correct bad hyphenation here
+\hyphenation{op-tical net-works semi-conduc-tor}
+
+
+\begin{document}
+%
+% paper title
+% Titles are generally capitalized except for words such as a, an, and, as,
+% at, but, by, for, in, nor, of, on, or, the, to and up, which are usually
+% not capitalized unless they are the first or last word of the title.
+% Linebreaks \\ can be used within to get better formatting as desired.
+% Do not put math or special symbols in the title.
+\title{A parallel implementation of Ehrlich-Aberth algorithm  for root finding of polynomials
+on MGPU with OpenMP/MPI}
+
+
+% author names and affiliations
+% use a multiple column layout for up to three different
+% affiliations
+\author{\IEEEauthorblockN{Michael Shell}
+\IEEEauthorblockA{School of Electrical and\\Computer Engineering\\
+Georgia Institute of Technology\\
+Atlanta, Georgia 30332--0250\\
+Email: http://www.michaelshell.org/contact.html}
+\and
+\IEEEauthorblockN{Homer Simpson}
+\IEEEauthorblockA{Twentieth Century Fox\\
+Springfield, USA\\
+Email: homer@thesimpsons.com}
+\and
+\IEEEauthorblockN{James Kirk\\ and Montgomery Scott}
+\IEEEauthorblockA{Starfleet Academy\\
+San Francisco, California 96678--2391\\
+Telephone: (800) 555--1212\\
+Fax: (888) 555--1212}}
+
+% conference papers do not typically use \thanks and this command
+% is locked out in conference mode. If really needed, such as for
+% the acknowledgment of grants, issue a \IEEEoverridecommandlockouts
+% after \documentclass
+
+% for over three affiliations, or if they all won't fit within the width
+% of the page, use this alternative format:
+% 
+%\author{\IEEEauthorblockN{Michael Shell\IEEEauthorrefmark{1},
+%Homer Simpson\IEEEauthorrefmark{2},
+%James Kirk\IEEEauthorrefmark{3}, 
+%Montgomery Scott\IEEEauthorrefmark{3} and
+%Eldon Tyrell\IEEEauthorrefmark{4}}
+%\IEEEauthorblockA{\IEEEauthorrefmark{1}School of Electrical and Computer Engineering\\
+%Georgia Institute of Technology,
+%Atlanta, Georgia 30332--0250\\ Email: see http://www.michaelshell.org/contact.html}
+%\IEEEauthorblockA{\IEEEauthorrefmark{2}Twentieth Century Fox, Springfield, USA\\
+%Email: homer@thesimpsons.com}
+%\IEEEauthorblockA{\IEEEauthorrefmark{3}Starfleet Academy, San Francisco, California 96678-2391\\
+%Telephone: (800) 555--1212, Fax: (888) 555--1212}
+%\IEEEauthorblockA{\IEEEauthorrefmark{4}Tyrell Inc., 123 Replicant Street, Los Angeles, California 90210--4321}}
+
+
+
+
+% use for special paper notices
+%\IEEEspecialpapernotice{(Invited Paper)}
+
+
+
+
+% make the title area
+\maketitle
+
+% As a general rule, do not put math, special symbols or citations
+% in the abstract
+\begin{abstract}
+The abstract goes here.
+\end{abstract}
+
+% no keywords
+
+
+
+
+% For peer review papers, you can put extra information on the cover
+% page as needed:
+% \ifCLASSOPTIONpeerreview
+% \begin{center} \bfseries EDICS Category: 3-BBND \end{center}
+% \fi
+%
+% For peerreview papers, this IEEEtran command inserts a page break and
+% creates the second title. It will be ignored for other modes.
+\IEEEpeerreviewmaketitle
+
+
+
+\section{Introduction}
+Polynomials are mathematical algebraic structures used in science and engineering to capture physical phenomena and to express any outcome in the form of a function of some unknown variables. Formally speaking,  a polynomial $p(x)$ of degree \textit{n} having $n$ coefficients in the complex plane \textit{C} is :
+%%\begin{center}
+\begin{equation}
+     {\Large p(x)=\sum_{i=0}^{n}{a_{i}x^{i}}}.
+\end{equation}
+%%\end{center}
+
+The root finding problem consists in finding the values of all the $n$ values of the variable $x$ for which \textit{p(x)} is nullified. Such values are called zeros of $p$. If zeros are $\alpha_{i},\textit{i=1,...,n}$ the $p(x)$ can be written as :
+\begin{equation}
+     {\Large p(x)=a_{n}\prod_{i=1}^{n}(x-\alpha_{i}), a_{0} a_{n}\neq 0}.
+\end{equation}
+
+The problem of finding the roots of polynomials is encountered in different applications. Most of the numerical methods that deal with this problem are simultaneous ones. These methods start from the initial approximations of all the roots of the polynomial and give a sequence of approximations that converge to the roots of the polynomial. The first method of this group is Durand-Kerner method:
+\begin{equation}
+\label{DK}
+ DK: z_i^{k+1}=z_{i}^{k}-\frac{P(z_i^{k})}{\prod_{i\neq j}(z_i^{k}-z_j^{k})},   i = 1, . . . , n,
+\end{equation}
+%%\end{center}
+where $z_i^k$ is the $i^{th}$ root of the polynomial $p$ at the
+iteration $k$.
+Another method discovered by
+Borsch-Supan~\cite{ Borch-Supan63} and also described and brought
+in the following form by Ehrlich~\cite{Ehrlich67} and
+Aberth~\cite{Aberth73} uses a different iteration formula given as:
+%%\begin{center}
+\begin{equation}
+\label{Eq:EA}
+ EA: z_i^{k+1}=z_i^{k}-\frac{1}{{\frac {P'(z_i^{k})} {P(z_i^{k})}}-{\sum_{i\neq j}\frac{1}{(z_i^{k}-z_j^{k})}}}, i = 1, . . . , n,
+\end{equation}
+%%\end{center}
+where $p'(z)$ is the polynomial derivative of $p$ evaluated in the
+point $z$.
+
+%Aberth, Ehrlich and Farmer-Loizou~\cite{Loizou83} have proved that
+%the Ehrlich-Aberth method (EA) has a cubic order of convergence for simple roots whereas the Durand-Kerner has a quadratic order of %convergence.
+
+The main problem of the simultaneous methods is that the necessary time needed for the convergence is increased with the increasing of the degree of the polynomial. Many authors have treated the problem of implementation of simultaneous methods in parallel. Freeman [10] implemented and compared DK, EA and another method of the fourth order proposed by Farmer
+and Loizou [9], on a 8-processor linear chain, for polynomials of degree up to 8.
+The third method often diverges, but the first two methods have speed-up equal to 5.5. Later, Freeman and Bane [11] considered asynchronous algorithms, in which each processor continues to update its approximations even though the latest values of other $z^{k}_{i}$ have not been received from the other processors, in contrast with synchronous algorithms where it would wait those values before
+making a new iteration. Couturier and al. [12] proposed two methods of parallelization for a shared memory architecture with \textit{OpenMP} and for distributed memory one with \textit{MPI}. They were able to compute the roots of sparse polynomials of degree 10,000 in 116 seconds with \textit{OpenMP} and 135 seconds with \textit{MPI} only 8 personal computers and 2 communications per iteration. Comparing to the sequential implementation where it takes up to 3,300 seconds to obtain the same results, the authors show an interesting speedup.
+
+Very few works had been performed since this last work until the appearing of the Compute Unified Device Architecture (CUDA) [13], a parallel computing platform and a programming model invented by NVIDIA. The computing power of GPUs (Graphics Processing Unit) has exceeded that of CPUs. However, CUDA adopts a totally new computing architecture to use the hardware resources provided by GPU in order to offer a stronger computing ability to the massive data computing. Ghidouche and al [14] proposed an implementation of the Durand-Kerner method on GPU. Their main result showed that a parallel CUDA implementation is about 10 times faster than the sequential implementation on a single CPU for sparse polynomials of degree 48,000.
+
+Finding polynomial roots rapidly and accurately is the main objective of our work. In this paper we propose the parallelization of Ehrlich-Aberth method using a parallel programming paradigms (OpenMP, MPI) on GPUs. We consider two architectures: Shared memory with OpenMP API based on threads from the same system process, which each thread is attached to one GPU and after the various memory allocation, each thread throws its part of calculation ( to do this you must first load on the GPU required data and after Suddenly repatriate the result on the host). Distributed memory with MPI: The MPI library is often used for parallel programming [11] in
+cluster systems because it is a message-passing programming language. Each GPU are attached to one process MPI, and a loop is in charge of the distribution of tasks between the MPI processes. this solution can be used on one GPU, or executed on a distributed cluster of GPUs, employing the Message Passing Interface (MPI) to communicate between separate CUDA cards. This solution permits scaling of the problem size to larger classes than would be possible on a single device and demonstrates the performance which users might expect from future
+HPC architectures where accelerators are deployed. 
+ 
+This paper is organized as follows, in section 2 we recall the Ehrlich-Aberth method. In section 3 we present EA algorithm on single GPU. In section 4 we propose the EA algorithm implementation on MGPU for (OpenMP-CUDA) approach and (MPI-CUDA) approach. In section 5 we present our experiments and discus it. Finally, Section~\ref{sec6} concludes this paper and gives some hints for future research directions in this topic.
+ 
+ 
+\section{Parallel Programmings Model}
+ 
+\subsection{OpenMP}%L'article en anglais Multi-GPU and multi-CPU accelerated FDTD scheme for vibroacoustic applications 
+Open Multi-Processing (OpenMP) is a shared memory architecture API that provides multi thread capacity [22]. OpenMP is
+a portable approach for parallel programming on shared memory systems based on compiler directives, that can be included in order
+to parallelize a loop. In this way, a set of loops can be distributed along the different threads that will access to different data allo-
+cated in local shared memory. One of the advantages of OpenMP is its global view of application memory address space that allows relatively fast development of parallel applications with easier maintenance. However, it is often difficult to get high rates of
+performance in large scale applications. Although, in OpenMP a usage of threads ids and managing data explicitly as done in an MPI
+code can be considered, it defeats the advantages of OpenMP.
+
+\subsection{OpenMP} %L'article en Français Programmation multiGPU – OpenMP versus MPI
+OpenMP is a shared memory programming API based on threads from
+the same system process. Designed for multiprocessor shared memory UMA or
+NUMA [10], it relies on the execution model SPMD ( Single Program, Multiple Data Stream )
+where the thread "master" and threads "slaves" asynchronously execute their codes
+communicate / synchronize via shared memory [7]. It also helps to build
+the loop parallelism and is very suitable for an incremental code parallelization
+Sequential natively. Threads share some or all of the available memory and can
+have private memory areas [6].
+
+\subsection{MPI} %L'article en Français Programmation multiGPU – OpenMP versus MPI
+ The library MPI allows to use a distributed memory architecture. The various processes have their own environment of execution and execute their codes in a asynchronous way, according to the model MIMD (Multiple Instruction streams, Multiple Dated streams); they communicate and synchronize by exchanges of messages [17]. MPI messages are explicitly sent, while the exchanges are implicit within the framework of a programming multi-thread (OpenMP/Pthreads).
+ 
+\subsection{CUDA}%L'article en anglais Multi-GPU and multi-CPU accelerated FDTD scheme for vibroacoustic applications
+ CUDA (an acronym for Compute Unified Device Architecture) is a parallel computing architecture developed by NVIDIA [28]. The
+unit of execution in CUDA is called a thread. Each thread executes the kernel by the streaming processors in parallel. In CUDA,
+a group of threads that are executed together is called thread blocks, and the computational grid consists of a grid of thread
+blocks. Additionally, a thread block can use the shared memory on a single multiprocessor as while as the grid executes a single
+CUDA program logically in parallel. Thus in CUDA programming, it is necessary to design carefully the arrangement of the thread
+blocks in order to ensure low latency and a proper usage of shared memory, since it can be shared only in a thread block
+scope. The effective bandwidth of each memory space depends on the memory access pattern. Since the global memory has lower
+bandwidth than the shared memory, the global memory accesses should be minimized.
+
+
+We introduced three paradigms of parallel programming. Our objective consist to implement an algorithm of root finding polynomial on multiple GPUs. It primordial to know how manage CUDA context of different GPUs. A direct method for controlling the various GPU is to use as many threads or processes that GPU. We can choose the GPU index based on the identifier of OpenMP thread or the rank of the MPI process. Both approaches will be created.
+
+\section{The EA algorithm on single GPU}
+
+
+\section{The EA algorithm on Multi-GPU}
+
+
+\subsection{MGPU (OpenMP-CUDA)approach}
+\subsection{MGPU (MPI-CUDA)approach}
+\section{experiments}
+% An example of a floating figure using the graphicx package.
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+%\caption{Simulation results for the network.}
+%\label{fig_sim}
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+% results in a large percentage of a column being occupied by floats.
+
+
+% An example of a double column floating figure using two subfigures.
+% (The subfig.sty package must be loaded for this to work.)
+% The subfigure \label commands are set within each subfloat command,
+% and the \label for the overall figure must come after \caption.
+% \hfil is used as a separator to get equal spacing.
+% Watch out that the combined width of all the subfigures on a 
+% line do not exceed the text width or a line break will occur.
+%
+%\begin{figure*}[!t]
+%\centering
+%\subfloat[Case I]{\includegraphics[width=2.5in]{box}%
+%\label{fig_first_case}}
+%\hfil
+%\subfloat[Case II]{\includegraphics[width=2.5in]{box}%
+%\label{fig_second_case}}
+%\caption{Simulation results for the network.}
+%\label{fig_sim}
+%\end{figure*}
+%
+% Note that often IEEE papers with subfigures do not employ subfigure
+% captions (using the optional argument to \subfloat[]), but instead will
+% reference/describe all of them (a), (b), etc., within the main caption.
+% Be aware that for subfig.sty to generate the (a), (b), etc., subfigure
+% labels, the optional argument to \subfloat must be present. If a
+% subcaption is not desired, just leave its contents blank,
+% e.g., \subfloat[].
+
+
+% An example of a floating table. Note that, for IEEE style tables, the
+% \caption command should come BEFORE the table and, given that table
+% captions serve much like titles, are usually capitalized except for words
+% such as a, an, and, as, at, but, by, for, in, nor, of, on, or, the, to
+% and up, which are usually not capitalized unless they are the first or
+% last word of the caption. Table text will default to \footnotesize as
+% the IEEE normally uses this smaller font for tables.
+% The \label must come after \caption as always.
+%
+%\begin{table}[!t]
+%% increase table row spacing, adjust to taste
+%\renewcommand{\arraystretch}{1.3}
+% if using array.sty, it might be a good idea to tweak the value of
+% \extrarowheight as needed to properly center the text within the cells
+%\caption{An Example of a Table}
+%\label{table_example}
+%\centering
+%% Some packages, such as MDW tools, offer better commands for making tables
+%% than the plain LaTeX2e tabular which is used here.
+%\begin{tabular}{|c||c|}
+%\hline
+%One & Two\\
+%\hline
+%Three & Four\\
+%\hline
+%\end{tabular}
+%\end{table}
+
+
+% Note that the IEEE does not put floats in the very first column
+% - or typically anywhere on the first page for that matter. Also,
+% in-text middle ("here") positioning is typically not used, but it
+% is allowed and encouraged for Computer Society conferences (but
+% not Computer Society journals). Most IEEE journals/conferences use
+% top floats exclusively. 
+% Note that, LaTeX2e, unlike IEEE journals/conferences, places
+% footnotes above bottom floats. This can be corrected via the
+% \fnbelowfloat command of the stfloats package.
+
+
+
+
+\section{Conclusion}
+The conclusion goes here.
+
+
+
+
+% conference papers do not normally have an appendix
+
+
+% use section* for acknowledgment
+\section*{Acknowledgment}
+
+
+The authors would like to thank...
+
+
+
+
+
+% trigger a \newpage just before the given reference
+% number - used to balance the columns on the last page
+% adjust value as needed - may need to be readjusted if
+% the document is modified later
+%\IEEEtriggeratref{8}
+% The "triggered" command can be changed if desired:
+%\IEEEtriggercmd{\enlargethispage{-5in}}
+
+% references section
+
+% can use a bibliography generated by BibTeX as a .bbl file
+% BibTeX documentation can be easily obtained at:
+% http://mirror.ctan.org/biblio/bibtex/contrib/doc/
+% The IEEEtran BibTeX style support page is at:
+% http://www.michaelshell.org/tex/ieeetran/bibtex/
+%\bibliographystyle{IEEEtran}
+% argument is your BibTeX string definitions and bibliography database(s)
+%\bibliography{IEEEabrv,../bib/paper}
+%
+% <OR> manually copy in the resultant .bbl file
+% set second argument of \begin to the number of references
+% (used to reserve space for the reference number labels box)
+\begin{thebibliography}{1}
+
+\bibitem{IEEEhowto:kopka}
+H.~Kopka and P.~W. Daly, \emph{A Guide to \LaTeX}, 3rd~ed.\hskip 1em plus
+  0.5em minus 0.4em\relax Harlow, England: Addison-Wesley, 1999.
+
+\end{thebibliography}
+
+
+
+
+% that's all folks
+\end{document}
+
+