X-Git-Url: https://bilbo.iut-bm.univ-fcomte.fr/and/gitweb/mpi-energy2.git/blobdiff_plain/e190696e80767b1bc629701f186939c868d24395..26cbe1ae1953d2db886af547cac5067e697ac555:/mpi-energy2-extension/Heter_paper.tex?ds=sidebyside diff --git a/mpi-energy2-extension/Heter_paper.tex b/mpi-energy2-extension/Heter_paper.tex index 8ada2a0..e30d62c 100644 --- a/mpi-energy2-extension/Heter_paper.tex +++ b/mpi-energy2-extension/Heter_paper.tex @@ -54,7 +54,7 @@ \newcommand{\Sopt}[1][]{\Xsub{S}{opt}_{#1}} \newcommand{\Tcm}[1][]{\Xsub{T}{cm}_{\fxheight{#1}}} \newcommand{\Tcp}[1][]{\Xsub{T}{cp}_{#1}} -\newcommand{\Ppeak}[1][]{\Xsub{P}{peak}_{#1}} +\newcommand{\Pmax}[1][]{\Xsub{P}{max}_{#1}} \newcommand{\Pidle}[1][]{\Xsub{P}{idle}_{\fxheight{#1}}} \newcommand{\TcpOld}[1][]{\Xsub{T}{cpOld}_{#1}} \newcommand{\Tnew}{\Xsub{T}{New}} @@ -350,9 +350,9 @@ maximum frequency for all nodes: \end{equation} Where $\Ereduced$ is computed using (\ref{eq:energy}) and $\Eoriginal$ is -computed as in (). +computed as in (\ref{eq:eorginal}). + -\textcolor{red}{A reference is missing} \begin{equation} \label{eq:eorginal} \Eoriginal = \sum_{i=1}^{N} \sum_{j=1}^{M} ( \Pd[ij] \cdot \Tcp[ij]) + @@ -477,9 +477,7 @@ in~\cite{Zhuo_Energy.efficient.Dynamic.Task.Scheduling,Rauber_Analytical.Modelin \label{dvfs} \end{algorithm} -\subsection{The algorithm details} -\textcolor{red}{Delete the subsection if there's only one.} In this section, the scaling factors selection algorithm for grids, algorithm~\ref{HSA}, is presented. It selects the vector of the frequency scaling factors that gives the best trade-off between minimizing the @@ -578,29 +576,28 @@ Grid'5000~\cite{grid5000} is a large-scale testbed that consists of ten sites di which is the French National Telecommunication Network for Technology. Each site of the grid is composed of few heterogeneous computing clusters and each cluster contains many homogeneous nodes. In total, - grid'5000 has about one thousand heterogeneous nodes and eight thousand cores. In each site, +grid'5000 has about one thousand heterogeneous nodes and eight thousand cores. In each site, the clusters and their nodes are connected via high speed local area networks. Two types of local networks are used, Ethernet or Infiniband networks which have different characteristics in terms of bandwidth and latency. Since grid'5000 is dedicated for testing, contrary to production grids it allows a user to deploy its own customized operating system on all the booked nodes. The user could have root rights and thus apply DVFS operations while executing a distributed application. Moreover, the grid'5000 testbed provides at some sites a power measurement tool to capture the power consumption for each node in those sites. The measured power is the overall consumed power by by all the components of a node at a given instant, such as CPU, hard drive, main-board, memory, ... For more details refer to \cite{Energy_measurement}. To just measure the CPU power of one core in a node $j$, - firstly, the power consumed by the node while being idle at instant $y$, noted as $\Pidle[jy]$, was measured. Then, the power was measured while running a single thread benchmark with no communication (no idle time) over the same node with its CPU scaled to the maximum available frequency. The latter power measured at time $x$ with maximum frequency for one core of node $j$ is noted $P\max[jx]$. The difference between the two measured power consumption represents the + firstly, the power consumed by the node while being idle at instant $y$, noted as $\Pidle[jy]$, was measured. Then, the power was measured while running a single thread benchmark with no communication (no idle time) over the same node with its CPU scaled to the maximum available frequency. The latter power measured at time $x$ with maximum frequency for one core of node $j$ is noted $Pmax[jx]$. The difference between the two measured power consumption represents the dynamic power consumption of that core with the maximum frequency, see figure(\ref{fig:power_cons}). -\textcolor{red}{why maximum and minimum, change peak in the equation and the figure} The dynamic power $\Pd[j]$ is computed as in equation (\ref{eq:pdyn}) \begin{equation} \label{eq:pdyn} - \Pd[j] = \max_{x=\beta_1,\dots \beta_2} (P\max[jx]) - \min_{y=\Theta_1,\dots \Theta_2} (\Pidle[jy]) + \Pd[j] = \max_{x=\beta_1,\dots \beta_2} (Pmax[jx]) - \min_{y=\Theta_1,\dots \Theta_2} (\Pidle[jy]) \end{equation} where $\Pd[j]$ is the dynamic power consumption for one core of node $j$, -$\lbrace \beta_1,\beta_2 \rbrace$ is the time interval for the measured peak power values, +$\lbrace \beta_1,\beta_2 \rbrace$ is the time interval for the measured maximum power values, $\lbrace\Theta_1,\Theta_2\rbrace$ is the time interval for the measured idle power values. Therefore, the dynamic power of one core is computed as the difference between the maximum -measured value in peak powers vector and the minimum measured value in the idle powers vector. +measured value in maximum powers vector and the minimum measured value in the idle powers vector. On the other hand, the static power consumption by one core is a part of the measured idle power consumption of the node. Since in grid'5000 there is no way to measure precisely the consumed static power and in~\cite{Our_first_paper,pdsec2015,Rauber_Analytical.Modeling.for.Energy} it was assumed that the static power represents a ratio of the dynamic power, the value of the static power is assumed as np[\%]{20} of dynamic power consumption of the core. @@ -743,7 +740,7 @@ Table \ref{tab:sc} shows the number of nodes used from each cluster for each sce \label{fig:time_sen} \end{figure} -The NAS parallel benchmarks are executed over these two platform +The NAS parallel benchmarks are executed over these two platforms with different number of nodes, as in Table \ref{tab:sc}. The overall energy consumption of all the benchmarks solving the class D instance and using the proposed frequency selection algorithm is measured @@ -755,21 +752,15 @@ time is measured for all the benchmarks over these different scenarios. The energy consumptions and the execution times for all the benchmarks are presented in the plots \ref{fig:eng_sen} and \ref{fig:time_sen} respectively. -In general, the energy consumed while executing the NAS benchmarks over one site scenario -for 16 and 32 nodes is lower than the energy consumed while executing over the two sites. -The long distance communications between the two distributed sites increases the idle time which leads to more static energy consumption. +For the majority of the benchmarks, the energy consumed while executing the NAS benchmarks over one site scenario +for 16 and 32 nodes is lower than the energy consumed while using two sites. +The long distance communications between the two distributed sites increase the idle time which leads to more static energy consumption. The execution times of these benchmarks over one site with 16 and 32 nodes are also lower when compared to those of the two sites scenario. - - -The EP and MG benchmarks, where there are no or small communications, showed -that their execution times and the energy consumptions are not effected -significantly in both scenarios and when the number of nodes is increase, -while the other benchmarks showed the inverse, because they have more communications -that proportionally increase the communication times if there are slow -communications or using more number of nodes or both of them. +However, the execution times and the energy consumptions of EP and MG benchmarks, which have no or small communications, are not significantly affected + in both scenarios. Even when the number of nodes is doubled. On the other hand, the communications of the rest of the benchmarks increases when using long distance communications between two sites or increasing the number of computing nodes. \begin{figure} \centering @@ -798,38 +789,40 @@ The energy saving percentage is computed as the ratio between the reduced energy consumption, equation (\ref{eq:energy}), and the original energy consumption, equation (\ref{eq:eorginal}), for all benchmarks as in figure \ref{fig:eng_s}. This figure shows that the energy saving percentages of one site scenario for -16 and 32 nodes are bigger than those of the two sites scenario. This is because -the computations to communications ratio in one site scenario is higher -than the ratio of the two sites scenarios, due to the increase in the communication -times. Moreover, the frequencies selecting algorithm selects smaller frequencies, bigger -scaling factors, when the computations times are higher than communication times, -producing smaller energy consumption, because the dynamic energy consumption -is decreased linearly with computation times that decreased exponentially with -scaling factors. On the other side, the increase in the number of computing nodes can be -increase the communication times and thus producing less energy saving depending on the -benchmarks being executed. The benchmarks CG, MG, BT and FT show more -energy saving percentage in one site scenario when executed over 16 nodes comparing to 32 nodes. While -the benchmarks LU and SP showed the inverse, because there computations to -communications ratio is not effected to the increase in local site communications. -While all benchmarks are effected by the long distance communications in the two sites -scenarios, except EP benchmarks. In EP benchmark there is no communications -in their iterations, then it is independent from the effect of local and long -distance communications. Therefore, the energy saving percentage of this benchmarks is -depend on differences between the computing powers of the computing nodes, for example +16 and 32 nodes are bigger than those of the two sites scenario which is due +to the higher computations to communications ratio in the first scenario +than in the second one. Moreover, the frequency selecting algorithm selects smaller frequencies when the computations times are higher than the communication times which +results in a lower energy consumption. Indeed, the dynamic consumed power +is exponentially related to the CPU's frequency value. On the other side, the increase in the number of computing nodes can +increase the communication times and thus produces less energy saving depending on the +benchmarks being executed. The results of the benchmarks CG, MG, BT and FT show more +energy saving percentage in one site scenario when executed over 16 nodes comparing to 32 nodes. While, LU and SP consume more energy with 16 nodes than 32 in one site because there computations to +communications ratio is not affected by the increase of the number of local communications. + + +The energy saving percentage is reduced for all the benchmarks because of the long distance communications in the two sites +scenario, except for the EP benchmark which has no communications. Therefore, the energy saving percentage of this benchmark is +dependent on the maximum difference between the computing powers of the heterogeneous computing nodes, for example in the one site scenario, the graphite cluster is selected but in the two sits scenario -this cluster is replaced with Taurus cluster that be more powerful in computing power. +this cluster is replaced with Taurus cluster which is more powerful. Therefore, the energy saving of EP benchmarks are bigger in the two site scenario due -to increase in the differences between the computing powers of the nodes. This means, the higher +to the higher maximum difference between the computing powers of the nodes. +In fact, high differences between the nodes' computing powers make the proposed frequencies selecting -algorithm to selects smaller frequencies in the nodes of the higher computing power, -producing less energy consumption and thus more energy saving. -The best energy saving percentage was for one site scenario with 16 nodes, on average it -saves the energy consumption up to 30\%. - -Figure \ref{fig:per_d}, presents the performance degradation percentages for all benchmarks. -It shows that the performance degradation percentages of the one site scenario with -32 nodes, on average equal to 10\%, is higher than the performance degradation of one 16 nodes, -which on average equal to 3\%. This because selecting smaller frequencies in the one site scenarios, +algorithm select smaller frequencies for the powerful nodes which +produces less energy consumption and thus more energy saving. +The best energy saving percentage was obtained in the one site scenario with 16 nodes, The energy consumption was on average reduced up to 30\%. + + +Figure \ref{fig:per_d} presents the performance degradation percentages for all benchmarks. +The performance degradation percentage for the benchmarks running on one site with +16 or 32 nodes is on average equal to 3\% or 10\% respectively. + + \textcolor{red}{please correct the following paragraph because I do not understand it at all! Stop using we, this because, effected, while, ...} + + + + This because selecting smaller frequencies in the one site scenarios, when the computations grater than the communications , increase the number of the critical nodes when the number of nodes increased. The inverse happens in the tow sites scenario, this due to the lower computations to communications ratio that decreased with highest @@ -848,8 +841,159 @@ percentage. Finally, the best energy and performance tradeoff depends on the inc 1) the computations to communications ratio, 2) the differences in computing powers between the computing nodes and 3) the differences in static and the dynamic powers of the nodes. -\subsection{The experimental results of multi-cores clusters} -\label{sec.res} +\subsection{The experimental results of multicores clusters} +\label{sec.res-mc} +The grid'5000 clusters have different number of cores embedded in their nodes +as in the Table \ref{table:grid5000}. Moreover, the cores of each node are +connected via shared memory model, the data transfer between cores' local +memories achieved via the global memory \cite{rauber_book}. Therefore, in +this section the proposed scaling algorithm is implemented over the grid'5000 +clusters which are included multicores in the selected nodes as same as the +two previous platform scenarios that mentioned in the section \ref{sec.res}. +The two platform scenarios, the two sites and one site scenarios, with 32 +nodes are reconfigured to used multicores for each node. For example if +the participating number of nodes from a certain cluster is equal to 12 nodes, +in the multicores scenario the selected nodes is equal to 3 nodes with using +4 cores for each of them to produced 12 cores. These scenarios with one +core and multicores are demonstrated in Table \ref{table:sen-mc}. +The energy consumptions and execution times of running the NAS parallel +benchmarks, class D, over these four different scenarios are represented +in the figures \ref{fig:eng-cons-mc} and \ref{fig:time-mc} respectively. +The execution times of NAS benchmarks over the one site multicores scenario +is higher than the execution time of those running over one site multicores scenario. +This because in the one site multicores scenario the communication is increased significantly, +and all node's cores share the same node network link which increased +the communication times. While, the execution times of the NAS benchmarks over +the two site multicores scenario is less than those executed over the two +sites one core scenario. This because using multicores decrease the communications, +while the cores shared same nodes' link but the communications between the cores +are less than the communication times between the nodes over the long distance +networks, and thus the over all execution time decreased. Generally, executing +the NAS benchmarks over the one site one core gives smaller execution times +comparing to other scenarios. This because each node in this scenario has it's +dedicated network link that used independently by one core, while in the other +scenarios the communication times are higher when using long distance communication +link or using the shared link communications between cores of each node. +On the other hand, the energy consumptions of the NAS benchmarks over the +one site one cores is less than the one site multicores scenario because +this scenario had less execution time as mentioned before. Also, in the +one site one core scenario the computations to communications ratio is +higher, then the new scaled frequencies are decreased the dynamic energy +consumption, because the dynamic power consumption are decreased exponentially +with the new frequency scaling factors. These experiments also showed, the energy +consumption and the execution times of EP and MG benchmarks over these four +scenarios are not change a lot, because there are no or small communications + which are increase or decrease the static power consumptions. +The other benchmarks were showed that their energy consumptions and execution times +are changed according to the decreasing or increasing in the communication +times that are different from scenario to other or due to the amount of +communications in each of them. + +The energy saving percentages of all NAS benchmarks, as in figure +\ref{fig:eng-s-mc}, running over these four scenarios are presented. The figure +showed the energy saving percentages of NAS benchmarks over two sites multicores scenario is higher +than two sites once core scenario, this because the the computation +times in the two sites multicores scenario is higher than the computation times +of the two sites one core scenario, then the more reduction in the +dynamic energy can be obtained as mentioned previously. In contrast, in the one site one +core and one site multicores scenarios the energy saving percentages +are approximately equivalent, on average they are up to 25\%. This +because in the both scenarios there are a small difference in the +computations to communications ratio, leading the proposed scaling algorithm +to selects the frequencies proportionally to these ratios and keeping +as much as possible the energy saving percentages the same. The +performance degradation percentages of NAS benchmarks are presented in +figure \ref{fig:per-d-mc}. This figure indicates that performance +degradation percentages of running NAS benchmarks over two sites +multocores, on average is equal to 7\%, gives more performance degradation percentage +than two sites one core scenario, which on average is equal to 4\%. +This because when using the two sites multicores scenario increased +the computations to communications ratio, which may be increased the effect +on the overall execution time when the proposed scaling algorithm is applied and scaling down the frequencies. +The inverse was happened when the benchmarks are executed over one +site one core scenario their performance degradation percentages, on average +is equal to 10\%, are higher than those executed over one sit one core, +which on average is equal to 7\%. This because in one site +multicores scenario the computations to communications ratio is decreased +as mentioned before, thus selecting new frequencies are less effect +on the overall execution time. The tradeoff distances of all NAS +benchmarks over all scenarios are presented in the figure \ref{fig:dist-mc}. +These tradeoff distances are used to verified which scenario is the best in term of +energy and performance ratio. The one sites multicores scenario is the best scenario in term of +energy and performance tradeoff, on average is equal to 17.6\%, when comparing to the one site one core +scenario, one average is equal to 15.3\%. This because the one site multicores scenario +has the same energy saving percentages of the one site one core scenario but +with less performance degradation. The two sites multicores scenario is gives better +energy and performance tradeoff, one average is equal to 14.7\%, than the two sites +one core, on average is equal to 13.3\%. +Finally, using multicore in both scenarios increased the energy and performance tradeoff +distance. This is because using multicores are increased the computations to communications +ratio in two sites scenario and thus the energy saving increased over the performance degradation, whereas decreased this ratio +in one site scenario causing the performance degradation decreased over the energy saving. + + + + + +\begin{table}[] +\centering +\caption{The multicores scenarios} + +\begin{tabular}{|*{4}{c|}} +\hline +Scenario name & Cluster name & \begin{tabular}[c]{@{}c@{}}No. of nodes\\ in each cluster\end{tabular} & + \begin{tabular}[c]{@{}c@{}}No. of cores\\ for each node\end{tabular} \\ \hline +\multirow{3}{*}{Two sites/ one core} & Taurus & 10 & 1 \\ \cline{2-4} + & Graphene & 10 & 1 \\ \cline{2-4} + & Griffon & 12 & 1 \\ \hline +\multirow{3}{*}{Two sites/ multicores} & Taurus & 3 & 3 or 4 \\ \cline{2-4} + & Graphene & 3 & 3 or 4 \\ \cline{2-4} + & Griffon & 3 & 4 \\ \hline +\multirow{3}{*}{One site/ one core} & Graphite & 4 & 1 \\ \cline{2-4} + & Graphene & 12 & 1 \\ \cline{2-4} + & Griffon & 12 & 1 \\ \hline +\multirow{3}{*}{One site/ multicores} & Graphite & 3 & 3 or 4 \\ \cline{2-4} + & Graphene & 3 & 3 or 4 \\ \cline{2-4} + & Griffon & 3 & 4 \\ \hline +\end{tabular} +\label{table:sen-mc} +\end{table} + +\begin{figure} + \centering + \includegraphics[scale=0.5]{fig/eng_con.eps} + \caption{Comparing the energy consumptions of running NAS benchmarks over one core and multicores scenarios } + \label{fig:eng-cons-mc} +\end{figure} + + + \begin{figure} + \centering + \includegraphics[scale=0.5]{fig/time.eps} + \caption{Comparing the execution times of running NAS benchmarks over one core and multicores scenarios } + \label{fig:time-mc} +\end{figure} + + \begin{figure} + \centering + \includegraphics[scale=0.5]{fig/eng_s_mc.eps} + \caption{The energy saving of running NAS benchmarks over one core and multicores scenarios } + \label{fig:eng-s-mc} +\end{figure} + +\begin{figure} + \centering + \includegraphics[scale=0.5]{fig/per_d_mc.eps} + \caption{The performance degradation of running NAS benchmarks over one core and multicores scenarios } + \label{fig:per-d-mc} +\end{figure} + +\begin{figure} + \centering + \includegraphics[scale=0.5]{fig/dist_mc.eps} + \caption{The tradeoff distance of running NAS benchmarks over one core and multicores scenarios } + \label{fig:dist-mc} +\end{figure} \subsection{The results for different power consumption scenarios} \label{sec.compare}