From: jean-claude Date: Thu, 29 Oct 2015 14:44:46 +0000 (+0100) Subject: Merge branch 'master' of ssh://info.iut-bm.univ-fcomte.fr/mpi-energy2 X-Git-Url: https://bilbo.iut-bm.univ-fcomte.fr/and/gitweb/mpi-energy2.git/commitdiff_plain/5f3fce4924f798cbdf119e36bfa8228ad5f922e3?ds=sidebyside;hp=-c Merge branch 'master' of ssh://info.iut-bm.univ-fcomte.fr/mpi-energy2 Conflicts: mpi-energy2-extension/Heter_paper.tex --- 5f3fce4924f798cbdf119e36bfa8228ad5f922e3 diff --combined mpi-energy2-extension/Heter_paper.tex index 49ccbf7,88731ec..e876264 --- a/mpi-energy2-extension/Heter_paper.tex +++ b/mpi-energy2-extension/Heter_paper.tex @@@ -432,7 -432,7 +432,7 @@@ communication and no slack time The main objective of DVFS operation is to reduce the overall energy consumption~\cite{Le_DVFS.Laws.of.Diminishing.Returns}. The operational frequency $F$ depends linearly on the supply voltage $V$, i.e., $V = \beta \cdot -F$ with some constant $\beta$.~This equation is used to study the change of the +F$ with some constant $\beta$. This equation is used to study the change of the dynamic voltage with respect to various frequency values in~\cite{Rauber_Analytical.Modeling.for.Energy}. The reduction process of the frequency can be expressed by the scaling factor $S$ which is the ratio between @@@ -580,7 -580,7 +580,7 @@@ computed as in (\ref{eq:eorginal}) While the main goal is to optimize the energy and execution time at the same time, the normalized energy and execution time curves do not evolve (increase/decrease) in the same way. -According to the equations~(\ref{eq:pnorm}) and (\ref{eq:enorm}), the +According to Equations~\ref{eq:pnorm} and \ref{eq:enorm}, the vector of frequency scaling factors $S_1,S_2,\dots,S_N$ reduce both the energy and the execution time simultaneously. But the main objective is to produce maximum energy reduction with minimum execution time reduction. @@@ -653,8 -653,8 +653,8 @@@ in~\cite{Zhuo_Energy.efficient.Dynamic. \If{(not the first frequency)} \State $F_{ij} \gets F_{ij}+\Fdiff[ij],~i=1,\dots,N,~{j=1,\dots,M_i}.$ \EndIf - \State $\Told \gets $ computed as in equations (\ref{eq:told}). - \State $\Eoriginal \gets $ computed as in equations (\ref{eq:eorginal}) . + \State $\Told \gets $ computed as in Equation \ref{eq:told}. + \State $\Eoriginal \gets $ computed as in Equation \ref{eq:eorginal}. \State $\Sopt[ij] \gets 1,~i=1,\dots,N,~{j=1,\dots,M_i}. $ \State $\Dist \gets 0 $ \While {(all nodes have not reached their minimum \newline\hspace*{2.5em} frequency \textbf{or} $\Pnorm - \Enorm < 0 $)} @@@ -662,8 -662,8 +662,8 @@@ \State $F_{ij} \gets F_{ij} - \Fdiff[ij],~{i=1,\dots,N},~{j=1,\dots,M_i}$. \State $S_{ij} \gets \frac{\Fmax[ij]}{F_{ij}},~{i=1,\dots,N},~{j=1,\dots,M_i}.$ \EndIf - \State $\Tnew \gets $ computed as in equations (\ref{eq:perf}). - \State $\Ereduced \gets $ computed as in equations (\ref{eq:energy}). + \State $\Tnew \gets $ computed as in Equation \ref{eq:perf}. + \State $\Ereduced \gets $ computed as in Equation \ref{eq:energy}. \State $\Pnorm \gets \frac{\Told}{\Tnew}$, $\Enorm\gets \frac{\Ereduced}{\Eoriginal}$ \If{$(\Pnorm - \Enorm > \Dist)$} \State $\Sopt[ij] \gets S_{ij},~i=1,\dots,N,~j=1,\dots,M_i. $ @@@ -733,7 -733,7 +733,7 @@@ frequency scaling factors are computed of the slowest node and the computation time of the node $i$ as follows: \begin{equation} \label{eq:Scp} - \Scp[ij] = \frac{ \mathop{\max_{i=1,\dots N}}_{j=1,\dots,M}(\Tcp[ij])} {\Tcp[ij]} + \Scp[ij] = \frac{ \mathop{\max\limits_{i=1,\dots N}}\limits_{j=1,\dots,M}(\Tcp[ij])} {\Tcp[ij]} \end{equation} Using the initial frequency scaling factors computed in (\ref{eq:Scp}), the algorithm computes the initial frequencies for all nodes as a ratio between the @@@ -763,11 -763,11 +763,11 @@@ Therefore, the algorithm iterates on al bound until all nodes reach their minimum frequencies or their lower bounds, to compute the overall energy consumption and performance and selects the optimal vector of the frequency scaling factors. At each iteration the algorithm determines the slowest node -according to the equation (\ref{eq:perf}) and keeps its frequency unchanged, +according to Equation~\ref{eq:perf} and keeps its frequency unchanged, while it lowers the frequency of all other nodes by one gear. The new overall energy consumption and execution time are computed according to the new scaling factors. The optimal set of frequency scaling factors is the set that gives the -highest distance according to the objective function (\ref{eq:max}). +highest distance according to the objective function~\ref{eq:max}. Figures~\ref{fig:r1} and \ref{fig:r2} illustrate the normalized performance and consumed energy for an application running on a homogeneous cluster and a @@@ -802,10 -802,10 +802,10 @@@ Since grid'5000 is dedicated to testin the power consumption for each node in those sites. The measured power is the overall consumed power by all the components of a node at a given instant, such as CPU, hard drive, main-board, memory, ... For more details refer to \cite{Energy_measurement}. In order to correctly measure the CPU power of one core in a node $j$, firstly, the power consumed by the node while being idle at instant $y$, noted as $\Pidle[jy]$, was measured. Then, the power was measured while running a single thread benchmark with no communication (no idle time) over the same node with its CPU scaled to the maximum available frequency. The latter power measured at time $x$ with maximum frequency for one core of node $j$ is noted $\Pmax[jx]$. The difference between the two measured power consumptions represents the -dynamic power consumption of that core with the maximum frequency, see figure(\ref{fig:power_cons}). +dynamic power consumption of that core with the maximum frequency, see Figure~\ref{fig:power_cons}. -The dynamic power $\Pd[j]$ is computed as in equation (\ref{eq:pdyn}) +The dynamic power $\Pd[j]$ is computed as in Equation~\ref{eq:pdyn} \begin{equation} \label{eq:pdyn} \Pd[j] = \max_{x=\beta_1,\dots \beta_2} (\Pmax[jx]) - \min_{y=\Theta_1,\dots \Theta_2} (\Pidle[jy]) @@@ -819,14 -819,14 +819,14 @@@ measured value in maximum powers vecto On the other hand, the static power consumption by one core is a part of the measured idle power consumption of the node. Since in Grid'5000 there is no way to measure precisely the consumed static power and in~\cite{Our_first_paper,pdsec2015,Rauber_Analytical.Modeling.for.Energy} it was assumed that the static power represents a ratio of the dynamic power, the value of the static power is assumed as 20\% of dynamic power consumption of the core. -In the experiments presented in the following sections, two sites of grid'5000 were used, Lyon and Nancy sites. These two sites have in total seven different clusters as in figure (\ref{fig:grid5000}). +In the experiments presented in the following sections, two sites of grid'5000 were used, Lyon and Nancy sites. These two sites have in total seven different clusters as in Figure~\ref{fig:grid5000}. Four clusters from the two sites were selected in the experiments: one cluster from Lyon's site, Taurus, and three clusters from Nancy's site, Graphene, Griffon and Graphite. Each one of these clusters has homogeneous nodes inside, while nodes from different clusters are heterogeneous in many aspects such as: computing power, power consumption, available -frequency ranges and local network features: the bandwidth and the latency. Table \ref{table:grid5000} shows -the detailed characteristics of these four clusters. Moreover, the dynamic powers were computed using equation (\ref{eq:pdyn}) for all the nodes in the -selected clusters and are presented in table \ref{table:grid5000}. +frequency ranges and local network features: the bandwidth and the latency. Table~\ref{table:grid5000} shows +the detailed characteristics of these four clusters. Moreover, the dynamic powers were computed using Equation~\ref{eq:pdyn} for all the nodes in the +selected clusters and are presented in Table~\ref{table:grid5000}. \begin{figure}[!t] @@@ -855,25 -855,25 +855,25 @@@ The benchmarks have seven different cla \centering \begin{tabular}{|*{7}{c|}} \hline - Cluster & CPU & Max & Min & Diff. & no. of cores & dynamic power \\ - Name & model & Freq. & Freq. & Freq. & per CPU & of one core \\ - & & GHz & GHz & GHz & & \\ + & & Max & Min & Diff. & & \\ + Cluster & CPU & Freq. & Freq. & Freq. & No. of cores & Dynamic power \\ + Name & model & GHz & GHz & GHz & per CPU & of one core \\ \hline - & Intel & 2.3 & 1.2 & 0.1 & 6 & \np[W]{35} \\ - Taurus & Xeon & & & & & \\ - & E5-2630 & & & & & \\ + & Intel & & & & & \\ + Taurus & Xeon & 2.3 & 1.2 & 0.1 & 6 & \np[W]{35} \\ + & E5-2630 & & & & & \\ \hline - & Intel & 2.53 & 1.2 & 0.133 & 4 & \np[W]{23} \\ - Graphene & Xeon & & & & & \\ - & X3440 & & & & & \\ + & Intel & & & & & \\ + Graphene & Xeon & 2.53 & 1.2 & 0.133 & 4 & \np[W]{23} \\ + & X3440 & & & & & \\ \hline - & Intel & 2.5 & 2 & 0.5 & 4 & \np[W]{46} \\ - Griffon & Xeon & & & & & \\ - & L5420 & & & & & \\ + & Intel & & & & & \\ + Griffon & Xeon & 2.5 & 2 & 0.5 & 4 & \np[W]{46} \\ + & L5420 & & & & & \\ \hline - & Intel & 2 & 1.2 & 0.1 & 8 & \np[W]{35} \\ - Graphite & Xeon & & & & & \\ - & E5-2650 & & & & & \\ + & Intel & & & & & \\ + Graphite & Xeon & 2 & 1.2 & 0.1 & 8 & \np[W]{35} \\ + & E5-2650 & & & & & \\ \hline \end{tabular} \label{table:grid5000} @@@ -903,7 -903,7 +903,7 @@@ is very low due to the higher communica The NAS parallel benchmarks are executed over 16 and 32 nodes for each scenario. The number of participating computing nodes from each cluster is different because all the selected clusters do not have the same available number of nodes and all benchmarks do not require the same number of computing nodes. -Table \ref{tab:sc} shows the number of nodes used from each cluster for each scenario. +Table~\ref{tab:sc} shows the number of nodes used from each cluster for each scenario. \begin{table}[h] @@@ -938,17 -938,16 +938,16 @@@ The NAS parallel benchmarks are executed over these two platforms - with different number of nodes, as in Table \ref{tab:sc}. + with different number of nodes, as in Table~\ref{tab:sc}. The overall energy consumption of all the benchmarks solving the class D instance and using the proposed frequency selection algorithm is measured -using the equation of the reduced energy consumption, equation -(\ref{eq:energy}). This model uses the measured dynamic power showed in Table \ref{table:grid5000} and the static +using the equation of the reduced energy consumption, Equation~\ref{eq:energy}. This model uses the measured dynamic power showed in Table~\ref{table:grid5000} - +and the static power is assumed to be equal to 20\% of the dynamic power. The execution time is measured for all the benchmarks over these different scenarios. The energy consumptions and the execution times for all the benchmarks are -presented in plots \ref{fig:eng_sen} and \ref{fig:time_sen} respectively. +presented in Plots~\ref{fig:eng_sen} and \ref{fig:time_sen} respectively. For the majority of the benchmarks, the energy consumed while executing the NAS benchmarks over one site scenario for 16 and 32 nodes is lower than the energy consumed while using two sites. @@@ -964,8 -963,8 +963,8 @@@ However, the execution times and the e The energy saving percentage is computed as the ratio between the reduced -energy consumption, equation (\ref{eq:energy}), and the original energy consumption, -equation (\ref{eq:eorginal}), for all benchmarks as in figure \ref{fig:eng_s}. +energy consumption, Equation~\ref{eq:energy}, and the original energy consumption, +Equation~\ref{eq:eorginal}, for all benchmarks as in Figure~\ref{fig:eng_s}. This figure shows that the energy saving percentages of one site scenario for 16 and 32 nodes are bigger than those of the two sites scenario which is due to the higher computations to communications ratio in the first scenario @@@ -1029,7 -1028,7 +1028,7 @@@ The rest of the benchmarks showed diffe when the communication times increase and vice versa. Figure \ref{fig:dist} presents the distance percentage between the energy saving and the performance degradation for each benchmark over both scenarios. The tradeoff distance percentage can be -computed as in equation \ref{eq:max}. The one site scenario with 16 nodes gives the best energy and performance +computed as in Equation~\ref{eq:max}. The one site scenario with 16 nodes gives the best energy and performance tradeoff, on average it is equal to 26.8\%. The one site scenario using both 16 and 32 nodes had better energy and performance tradeoff comparing to the two sites scenario because the former has high speed local communications which increase the computations to communications ratio and the latter uses long distance communications which decrease this ratio. @@@ -1044,17 -1043,16 +1043,17 @@@ \label{sec.res-mc} The clusters of grid'5000 have different number of cores embedded in their nodes -as shown in Table \ref{table:grid5000}. In -this section, the proposed scaling algorithm is evaluated over the grid'5000 platform while using multi-cores nodes selected according to the one site scenario described in the section \ref{sec.res}. +as shown in Table~\ref{table:grid5000}. In +this section, the proposed scaling algorithm is evaluated over the grid'5000 platform while using multi-cores nodes selected according to the one site scenario described in Section~\ref{sec.res}. The one site scenario uses 32 cores from multi-cores nodes instead of 32 distinct nodes. For example if the participating number of cores from a certain cluster is equal to 14, in the multi-core scenario the selected nodes is equal to 4 nodes while using 3 or 4 cores from each node. The platforms with one -core per node and multi-cores nodes are shown in Table \ref{table:sen-mc}. +core per node and multi-cores nodes are shown in Table~\ref{table:sen-mc}. The energy consumptions and execution times of running class D of the NAS parallel benchmarks over these two different scenarios are presented -in figures \ref{fig:eng-cons-mc} and \ref{fig:time-mc} respectively. +in Figures \ref{fig:eng-cons-mc} and \ref{fig:time-mc} respectively. + \begin{table}[] \centering @@@ -1097,9 -1095,20 +1096,20 @@@ the one site one core scenario when co More energy reduction can be gained when this ratio is big because it pushes the proposed scaling algorithm to select smaller frequencies that decrease the dynamic power consumption. These experiments also showed that the energy consumption and the execution times of the EP and MG benchmarks do not change significantly over these two scenarios because there are no or small communications. Contrary to EP and MG, the energy consumptions and the execution times of the rest of the benchmarks vary according to the communication times that are different from one scenario to the other. - + \begin{figure*}[t] + \centering + \subfloat[The energy saving of running NAS benchmarks over one core and multicores scenarios]{% + \includegraphics[width=.48\textwidth]{fig/eng_s_mc.eps}\label{fig:eng-s-mc}} \hspace{0.4cm}% + \subfloat[The performance degradation of running NAS benchmarks over one core and multicores scenarios + ]{% + \includegraphics[width=.48\textwidth]{fig/per_d_mc.eps}\label{fig:per-d-mc}}\hspace{0.4cm}% + \subfloat[The tradeoff distance of running NAS benchmarks over one core and multicores scenarios]{% + \includegraphics[width=.48\textwidth]{fig/dist_mc.eps}\label{fig:dist-mc}} + \label{fig:exp-res} + \caption{The experimental results of one core and multi-cores scenarios} + \end{figure*} -The energy saving percentages of all NAS benchmarks running over these two scenarios are presented in figure \ref{fig:eng-s-mc}. +The energy saving percentages of all NAS benchmarks running over these two scenarios are presented in Figure~\ref{fig:eng-s-mc}. The figure shows that the energy saving percentages in the one core and the multi-cores scenarios are approximately equivalent, on average they are equal to 25.9\% and 25.1\% respectively. @@@ -1107,32 -1116,21 +1117,21 @@@ The energy consumption is reduced at th The performance degradation percentages of the NAS benchmarks are presented in -figure \ref{fig:per-d-mc}. It shows that the performance degradation percentages is higher for the NAS benchmarks over the one core per node scenario (on average equal to 10.6\%) than over the multi-cores scenario (on average equal to 7.5\%). The performance degradation percentages over the multi-cores scenario is lower because the computations to communications ratio is smaller than the ratio of the other scenario. +Figure\ref{fig:per-d-mc}. It shows that the performance degradation percentages are higher for the NAS benchmarks over the one core per node scenario (on average equal to 10.6\%) than over the multi-cores scenario (on average equal to 7.5\%). The performance degradation percentages over the multi-cores scenario are lower because the computations to communications ratios are smaller than the ratios of the other scenario. -The tradeoff distance percentages of the NAS benchmarks over the two scenarios are presented -in figure \ref{fig:dist-mc}. These tradeoff distance between energy consumption reduction and performance are used to verify which scenario is the best in both terms at the same time. The figure shows that the tradeoff distance percentages are on average bigger over the multi-cores scenario (17.6\%) than over the one core per node scenario (15.3\%). +The tradeoff distances percentages of the NAS benchmarks over the two scenarios are presented +in ~Figure~\ref{fig:dist-mc}. These tradeoff distances between energy consumption reduction and performance are used to verify which scenario is the best in both terms at the same time. The figure shows that the tradeoff distance percentages are on average bigger over the multi-cores scenario (17.6\%) than over the one core per node scenario (15.3\%). - \begin{figure*}[t] - \centering - \subfloat[The energy saving of running NAS benchmarks over one core and multicores scenarios]{% - \includegraphics[width=.48\textwidth]{fig/eng_s_mc.eps}\label{fig:eng-s-mc}} \hspace{0.4cm}% - \subfloat[The performance degradation of running NAS benchmarks over one core and multicores scenarios - ]{% - \includegraphics[width=.48\textwidth]{fig/per_d_mc.eps}\label{fig:per-d-mc}}\hspace{0.4cm}% - \subfloat[The tradeoff distance of running NAS benchmarks over one core and multicores scenarios]{% - \includegraphics[width=.48\textwidth]{fig/dist_mc.eps}\label{fig:dist-mc}} - \label{fig:exp-res} - \caption{The experimental results of one core and multi-cores scenarios} - \end{figure*} + \subsection{Experiments with different static power scenarios} \label{sec.pow_sen} -In section \ref{sec.grid5000}, since it was not possible to measure the static power consumed by a CPU, the static power was assumed to be equal to 20\% of the measured dynamic power. This power is consumed during the whole execution time, during computation and communication times. Therefore, when the DVFS operations are applied by the scaling algorithm and the CPUs' frequencies lowered, the execution time might increase and consequently the consumed static energy will be increased too. +In Section~\ref{sec.grid5000}, since it was not possible to measure the static power consumed by a CPU, the static power was assumed to be equal to 20\% of the measured dynamic power. This power is consumed during the whole execution time, during computation and communication times. Therefore, when the DVFS operations are applied by the scaling algorithm and the CPUs' frequencies lowered, the execution time might increase and consequently the consumed static energy will be increased too. The aim of this section is to evaluate the scaling algorithm while assuming different values of static powers. In addition to the previously used percentage of static power, two new static power ratios, 10\% and 30\% of the measured dynamic power of the core, are used in this section. @@@ -1140,7 -1138,7 +1139,7 @@@ The experiments have been executed wit In these experiments, class D of the NAS parallel benchmarks are executed over the Nancy site. 16 computing nodes from the three clusters, Graphite, Graphene and Griffon, where used in this experiment. - \begin{figure} + \begin{figure*}[t] \centering \subfloat[The energy saving percentages for the nodes executing the NAS benchmarks over the three power scenarios]{% \includegraphics[width=.48\textwidth]{fig/eng_pow.eps}\label{fig:eng-pow}} \hspace{0.4cm}% @@@ -1151,7 -1149,7 +1150,7 @@@ \includegraphics[width=.48\textwidth]{fig/dist_pow.eps}\label{fig:dist-pow}} \label{fig:exp-pow} \caption{The experimental results of different static power scenarios} - \end{figure} + \end{figure*} @@@ -1163,18 -1161,18 +1162,18 @@@ \end{figure} The energy saving percentages of the NAS benchmarks with the three static power scenarios are presented -in figure \ref{fig:eng_sen}. This figure shows that the 10\% of static power scenario +in Figure\ref{fig:eng_sen}. This figure shows that the 10\% of static power scenario gives the biggest energy saving percentages in comparison to the 20\% and 30\% static power scenarios. The small value of the static power consumption makes the proposed scaling algorithm select smaller frequencies for the CPUs. These smaller frequencies reduce the dynamic energy consumption more than increasing the consumed static energy which gives less overall energy consumption. The energy saving percentages of the 30\% static power scenario is the smallest between the other scenarios, because the scaling algorithm selects bigger frequencies for the CPUs which increases the energy consumption. Figure \ref{fig:fre-pow} demonstrates that the proposed scaling algorithm selects the best frequency scaling factors according to the static power consumption ratio being used. -The performance degradation percentages are presented in figure \ref{fig:per-pow}. +The performance degradation percentages are presented in Figure\ref{fig:per-pow}. The 30\% static power scenario had less performance degradation percentage because the scaling algorithm had selected big frequencies for the CPUs. While, the inverse happens in the 10\% and 20\% scenarios because the scaling algorithm had selected CPUs' frequencies smaller than those of the 30\% scenario. The tradeoff distance percentage for the NAS benchmarks with these three static power scenarios -are presented in figure \ref{fig:dist}. +are presented in Figure~\ref{fig:dist}. It shows that the best tradeoff distance percentage is obtained with the 10\% static power scenario and this percentage is decreased for the other two scenarios because the scaling algorithm had selected different frequencies according to the static power values. @@@ -1193,16 -1191,16 +1192,16 @@@ In this section, the proposed frequenci This objective function was also used by Spiliopoulos et al. algorithm \cite{Spiliopoulos_Green.governors.Adaptive.DVFS} where they select the frequencies that minimize the EDP product and apply them with DVFS operations to the multi-cores architecture. Their online algorithm predicts the energy consumption and execution time of a processor before using the EDP method. -To fairly compare the proposed frequencies scaling algorithm to Spiliopoulos et al. algorithm, called Maxdist and EDP respectively, both algorithms use the same energy model, equation \ref{eq:energy} and -execution time model, equation \ref{eq:perf}, to predict the energy consumption and the execution time for each computing node. -Moreover, both algorithms start the search space from the upper bound computed as in equation \ref{eq:Fint}. +To fairly compare the proposed frequencies scaling algorithm to Spiliopoulos et al. algorithm, called Maxdist and EDP respectively, both algorithms use the same energy model, Equation~\ref{eq:energy} and +execution time model, Equation~\ref{eq:perf}, to predict the energy consumption and the execution time for each computing node. +Moreover, both algorithms start the search space from the upper bound computed as in Equation~\ref{eq:Fint}. Finally, the resulting EDP algorithm is an exhaustive search algorithm that tests all the possible frequencies, starting from the initial frequencies (upper bound), and selects the vector of frequencies that minimize the EDP product. Both algorithms were applied to class D of the NAS benchmarks over 16 nodes. -The participating computing nodes are distributed according to the two scenarios described in section \ref{sec.res}. +The participating computing nodes are distributed according to the two scenarios described in Section~\ref{sec.res}. The experimental results, the energy saving, performance degradation and tradeoff distance percentages, are -presented in the figures \ref{fig:edp-eng}, \ref{fig:edp-perf} and \ref{fig:edp-dist} respectively. +presented in Figures~\ref{fig:edp-eng}, \ref{fig:edp-perf} and \ref{fig:edp-dist} respectively. \begin{figure*}[t] @@@ -1250,8 -1248,7 +1249,7 @@@ that the proposed algorithm outperform In the near future, we would like to develop a similar method that is adapted to asynchronous iterative applications where iterations are not synchronized and communications are overlapped with computations. - The development of - such a method might require a new energy model because the + The development of such a method might require a new energy model because the number of iterations is not known in advance and depends on the global convergence of the iterative system.