X-Git-Url: https://bilbo.iut-bm.univ-fcomte.fr/and/gitweb/myo-class.git/blobdiff_plain/c67ab60de95008178e26817946990382751d91d8..d983932e5a974928a10bbab7e86fdf3e162ae2ae:/totraindir.py

diff --git a/totraindir.py b/totraindir.py
index 4917b56..1fbaf08 100644
--- a/totraindir.py
+++ b/totraindir.py
@@ -4,12 +4,12 @@ import pydicom
 from os.path import join
 
 # locals
-from topng import topng
-from regularjson import search, RT_PATH, JSON_GTS, INFA_STR
+from topng import topng, mask
+from regularjson import search, RT_PATH, JSON_GTS, INFA_STR, EPI_STR
 
 # constants
 GLOB_DIR = '../../Data/Images_anonymous/'
-OUT_DIR = './train/'
+OUT_DIR = './generated/train/'
 INDICE_CASE = 'Case'
 
 START = None # to manage the number of Patient Case to use in training + validation, if START == None => 0, if END == None => last index, it will use all in GLOB_DIR
@@ -22,6 +22,11 @@ def get(l, i, r):
 
 if __name__ == '__main__':
 	l = sorted(ls(GLOB_DIR))
+
+	# Initiliaze 
+	wmin = hmin = None # None is important here, confert the 'minimum' algo
+	wmax = hmax = w = h = 0
+
 	for cas in l[START:END]:# cas like 'Case0002'
 		caspath = join(GLOB_DIR, cas)
 
@@ -58,20 +63,29 @@ if __name__ == '__main__':
 				continue
 				pass
 
-
 			for i, dic in enumerate(l1):
 				# print('join', r, l2[i])
 				ref = join(r, l2[i]) # logically, should be the json ref of i dicom image
 
 				infarctus = search(ref, INFA_STR)
-				if infarctus:
-					# print("infarctus:", infarctus) # Testing..
-					# topng(join(caspath, dic), '%/%-%' % (join(OUT_DIR, 'infarctus'), cas, dic)
-					# print(join(caspath, dic), '{}/{}-{}'.format(join(OUT_DIR, 'infarctus'), cas, dic)) # Testing..
-					topng(join(caspath, dic), '{}/{}-{}'.format(join(OUT_DIR, 'infarctus'), cas, dic))
-				else:
-					# print("no infarctus:", infarctus) # Testing..
-					# print(join(caspath, dic), '{}/{}-{}'.format(join(OUT_DIR, 'noinfarctus'), cas, dic)) # Testing..
-					topng(join(caspath, dic), '{}/{}-{}'.format(join(OUT_DIR, 'noinfarctus'), cas, dic))
-
-	print('Ended!')
\ No newline at end of file
+				# epimask = mask(ref, EPI_STR)
+				# print("infarctus:", infarctus) # Testing..
+				# topng(join(caspath, dic), '%/%-%' % (join(OUT_DIR, 'infarctus'), cas, dic)
+				w, h = topng(join(caspath, dic), '{}/{}-{}'.format(join(OUT_DIR, 'infarctus' if infarctus else 'noinfarctus'), cas, dic))
+
+				# search maximums
+				if wmax < w: wmax = w 
+				if hmax < h: hmax = h
+
+				# search width minimum
+				if wmin is None: wmin = w
+				elif wmin > w: wmin = w
+				
+				# search height minimum
+				if hmin is None: hmin = h
+				elif hmin > h: hmin = h
+
+	print('min-width, max-width:', (wmin, wmax))
+	print('min-height, max-height:', (hmin, hmax))
+
+	print('Ended!')