Email: \email{{raphael.couturier,arnaud.giersch,david.laiymani,charles.ramamonjisoa}@univ-fcomte.fr}
}
-%% Lilia Ziane Khodja: Department of Aerospace \& Mechanical Engineering\\ Non
-Linear Computational Mechanics\\ University of Liege\\ Liege, Belgium. Email:
-l.zianekhodja@ulg.ac.be
+%% Lilia Ziane Khodja: Department of Aerospace \& Mechanical Engineering\\ Non Linear Computational Mechanics\\ University of Liege\\ Liege, Belgium. Email: l.zianekhodja@ulg.ac.be
-\begin{abstract} The behavior of multicore applications is always a challenge
+\begin{abstract} The behavior of multi-core applications is always a challenge
to predict, especially with a new architecture for which no experiment has been
performed. With some applications, it is difficult, if not impossible, to build
accurate performance models. That is why another solution is to use a simulation
In this paper, we focus our attention on two parallel iterative algorithms based
on the Multisplitting algorithm and we compare them to the GMRES algorithm.
-These algorithms are used to solve libear systems. Two different variantsof
+These algorithms are used to solve libear systems. Two different variants of
the Multisplitting are studied: one using synchronoous iterations and another
one with asynchronous iterations. For each algorithm we have tested different
parameters to see their influence. We strongly recommend people interested
%\keywords{Algorithm; distributed; iterative; asynchronous; simulation; simgrid;
%performance}
-\keywords{Multisplitting algorithms, Synchronous and asynchronous
-iterations, SimGrid, Simulation}
+\keywords{ Performance evaluation, Simulation, SimGrid, Synchronous and asynchronous iterations, Multisplitting algorithms}
\maketitle
-\section{Introduction} The use of multi-core architectures for solving large
-scientific problems seems to become imperative in a lot of cases.
+\section{Introduction} The use of multi-core architectures to solve large
+scientific problems seems to become imperative in many situations.
Whatever the scale of these architectures (distributed clusters, computational
grids, embedded multi-core,~\ldots) they are generally well adapted to execute
complex parallel applications operating on a large amount of data.
given application for a given architecture. In this way and in order to reduce
the access cost to these computing resources it seems very interesting to use a
simulation environment. The advantages are numerous: development life cycle,
-code debugging, ability to obtain results quickly,~\ldots at the condition that
-the simulation results are in education with the real ones.
+code debugging, ability to obtain results quickly,~\ldots. In counterpart, the simulation results need to be consistent with the real ones.
In this paper we focus on a class of highly efficient parallel algorithms called
\emph{iterative algorithms}. The parallel scheme of iterative methods is quite
scheme. In the asynchronous scheme a task can compute a new iteration without
having to wait for the data dependencies coming from its neighbors. Both
communication and computations are asynchronous inducing that there is no more
-idle times, due to synchronizations, between two iterations~\cite{bcvc06:ij}.
+idle time, due to synchronizations, between two iterations~\cite{bcvc06:ij}.
This model presents some advantages and drawbacks that we detail in
section~\ref{sec:asynchro} but even if the number of iterations required to
converge is generally greater than for the synchronous case, it appears that
times by suppressing idle times due to synchronizations~(see~\cite{bahi07}
for more details).
-Nevertheless, in both cases (synchronous or asynchronous) it is very time
-consuming to find optimal configuration and deployment requirements for a given
-application on a given multi-core architecture. Finding good resource
-allocations policies under varying CPU power, network speeds and loads is very
-challenging and labor intensive~\cite{Calheiros:2011:CTM:1951445.1951450}. This
-problematic is even more difficult for the asynchronous scheme where variations
-of the parameters of the execution platform can lead to very different number of
-iterations required to converge and so to very different execution times. In
-this challenging context we think that the use of a simulation tool can greatly
+Nevertheless, in both cases (synchronous or asynchronous) it is very time
+consuming to find optimal configuration and deployment requirements for a given
+application on a given multi-core architecture. Finding good resource
+allocations policies under varying CPU power, network speeds and loads is very
+challenging and labor intensive~\cite{Calheiros:2011:CTM:1951445.1951450}. This
+problematic is even more difficult for the asynchronous scheme where a small
+parameter variation of the execution platform can lead to very different numbers
+of iterations to reach the converge and so to very different execution times. In
+this challenging context we think that the use of a simulation tool can greatly
leverage the possibility of testing various platform scenarios.
The main contribution of this paper is to show that the use of a simulation tool
solver~\cite{saad86} in synchronous mode. The obtained results on different
simulated multi-core architectures confirm the real results previously obtained
on non simulated architectures. We also confirm the efficiency of the
-asynchronous multisplitting algorithm comparing to the synchronous GMRES. In
+asynchronous multisplitting algorithm compared to the synchronous GMRES. In
this way and with a simple computing architecture (a laptop) SimGrid allows us
to run a test campaign of a real parallel iterative applications on
different simulated multi-core architectures. To our knowledge, there is no
\section{The asynchronous iteration model}
\label{sec:asynchro}
+Asynchronous iterative methods have been studied for many years theoritecally and
+practically. Many methods have been considered and convergence results have been
+proved. These methods can be used to solve, in parallel, fixed point problems
+(i.e. problems for which the solution is $x^\star =f(x^\star)$. In practice,
+asynchronous iterations methods can be used to solve, for example, linear and
+non-linear systems of equations or optimization problems, interested readers are
+invited to read~\cite{BT89,bahi07}.
+
+Before using an asynchronous iterative method, the convergence must be
+studied. Otherwise, the application is not ensure to reach the convergence. An
+algorithm that supports both the synchronous or the asynchronous iteration model
+requires very few modifications to be able to be executed in both variants. In
+practice, only the communications and convergence detection are different. In
+the synchronous mode, iterations are synchronized whereas in the asynchronous
+one, they are not. It should be noticed that non blocking communications can be
+used in both modes. Concerning the convergence detection, synchronous variants
+can use a global convergence procedure which acts as a global synchronization
+point. In the asynchronous model, the convergence detection is more tricky as
+it must not synchronize all the processors. Interested readers can
+consult~\cite{myBCCV05c,bahi07,ccl09:ij}.
+
\section{SimGrid}
\label{sec:simgrid}
\label{sec:04}
\subsection{Synchronous and asynchronous two-stage methods for sparse linear systems}
\label{sec:04.01}
-In this paper we focus on two-stage multisplitting methods in their both versions synchronous and asynchronous~\cite{Frommer92,Szyld92,Bru95}. These iterative methods are based on multisplitting methods~\cite{O'leary85,White86,Alefeld97} and use two nested iterations: the outer iteration and the inner iteration. Let us consider the following sparse linear system of $n$ equations in $\mathbb{R}$
+In this paper we focus on two-stage multisplitting methods in their both versions (synchronous and asynchronous)~\cite{Frommer92,Szyld92,Bru95}. These iterative methods are based on multisplitting methods~\cite{O'leary85,White86,Alefeld97} and use two nested iterations: the outer iteration and the inner iteration. Let us consider the following sparse linear system of $n$ equations in $\mathbb{R}$
\begin{equation}
Ax=b,
\label{eq:01}
\end{equation}
-where $A$ is a sparse square and nonsingular matrix, $b$ is the right-hand side and $x$ is the solution of the system. Our work in this paper is restricted to the block Jacobi splitting method. This approach of multisplitting consists in partitioning the matrix $A$ into $L$ horizontal band matrices of order $\frac{n}{L}\times n$ without overlapping (i.e. sub-vectors $\{x_\ell\}_{1\leq\ell\leq L}$ are disjoint). The two-stage multisplitting methods solve the linear system~(\ref{eq:01}) iteratively as follows
+where $A$ is a sparse square and nonsingular matrix, $b$ is the right-hand side and $x$ is the solution of the system. Our work in this paper is restricted to the block Jacobi splitting method. This approach of multisplitting consists in partitioning the matrix $A$ into $L$ horizontal band matrices of order $\frac{n}{L}\times n$ without overlapping (i.e. sub-vectors $\{x_\ell\}_{1\leq\ell\leq L}$ are disjoint). Two-stage multisplitting methods solve the linear system~(\ref{eq:01}) iteratively as follows
\begin{equation}
x_\ell^{k+1} = A_{\ell\ell}^{-1}(b_\ell - \displaystyle\sum^{L}_{\substack{m=1\\m\neq\ell}}{A_{\ell m}x^k_m}),\mbox{~for~}\ell=1,\ldots,L\mbox{~and~}k=1,2,3,\ldots
\label{eq:02}
%\end{algorithm}
\end{figure}
-In this paper, we propose two algorithms of two-stage multisplitting methods. The first algorithm is based on asynchronous model which allows the communications to be overlapped by computations and reduces the idle times resulting from the synchronizations. So in the asynchronous mode, our two-stage algorithm uses asynchronous outer iterations and asynchronous communications between clusters. The communications (i.e. lines~\ref{send} and~\ref{recv} in Figure~\ref{alg:01}) are performed by message passing using MPI non-blocking communication routines. The convergence of the asynchronous iterations is detected when all clusters have locally converged
+In this paper, we propose two algorithms of two-stage multisplitting methods. The first algorithm is based on the asynchronous model which allows the communications to be overlapped by computations and reduces the idle times resulting from the synchronizations. So in the asynchronous mode, our two-stage algorithm uses asynchronous outer iterations and asynchronous communications between clusters. The communications (i.e. lines~\ref{send} and~\ref{recv} in Figure~\ref{alg:01}) are performed by message passing using MPI non-blocking communication routines. The convergence of the asynchronous iterations is detected when all clusters have locally converged
\begin{equation}
k\geq\MIM\mbox{~or~}\|x_\ell^{k+1}-x_\ell^k\|_{\infty }\leq\TOLM,
\label{eq:04}
\end{equation}
-where $\MIM$ is the maximum number of outer iterations and $\TOLM$ is the tolerance threshold for the two-stage algorithm.
+where $\MIM$ is the maximum number of outer iterations and $\TOLM$ is the tolerance threshold for the two-stage algorithm.
The second two-stage algorithm is based on synchronous outer iterations. We propose to use the Krylov iteration based on residual minimization to improve the slow convergence of the multisplitting methods. In this case, a $n\times s$ matrix $S$ is set using solutions issued from the inner iteration
\begin{equation}
\subsection{Simulation of two-stage methods using SimGrid framework}
\label{sec:04.02}
-One of our objectives when simulating the application in SIMGRID is, as in real life, to get accurate results (solutions of the problem) but also ensure the test reproducibility under the same conditions. According our experience, very few modifications are required to adapt a MPI program to run in SIMGRID simulator using SMPI (Simulator MPI).The first modification is to include SMPI libraries and related header files (smpi.h). The second and important modification is to eliminate all global variables in moving them to local subroutine or using a Simgrid selector called "runtime automatic switching" (smpi/privatize\_global\_variables). Indeed, global variables can generate side effects on runtime between the threads running in the same process, generated by the Simgrid to simulate the grid environment.The last modification on the MPI program pointed out for some cases, the review of the sequence of the MPI\_Isend, MPI\_Irecv and MPI\_Waitall instructions which might cause an infinite loop.
-
-
-\paragraph{SIMGRID Simulator parameters}
+One of our objectives when simulating the application in Simgrid is, as in real
+life, to get accurate results (solutions of the problem) but also ensure the
+test reproducibility under the same conditions. According to our experience,
+very few modifications are required to adapt a MPI program for the Simgrid
+simulator using SMPI (Simulator MPI). The first modification is to include SMPI
+libraries and related header files (smpi.h). The second modification is to
+suppress all global variables by replacing them with local variables or using a
+Simgrid selector called "runtime automatic switching"
+(smpi/privatize\_global\_variables). Indeed, global variables can generate side
+effects on runtime between the threads running in the same process, generated by
+Simgrid to simulate the grid environment. \RC{On vire cette phrase ?} \RCE {Si c'est la phrase d'avant sur les threads, je pense qu'on peut la retenir car c'est l'explication du pourquoi Simgrid n'aime pas les variables globales. Si c'est pas bien dit, on peut la reformuler. Si c'est la phrase ci-apres, effectivement, on peut la virer si elle preterais a discussion}The
+last modification on the MPI program pointed out for some cases, the review of
+the sequence of the MPI\_Isend, MPI\_Irecv and MPI\_Waitall instructions which
+might cause an infinite loop.
+
+
+\paragraph{Simgrid Simulator parameters}
+\ \\ \noindent Before running a Simgrid benchmark, many parameters for the
+computation platform must be defined. For our experiments, we consider platforms
+in which several clusters are geographically distant, so there are intra and
+inter-cluster communications. In the following, these parameters are described:
\begin{itemize}
- \item hostfile: Hosts description file.
- \item plarform: File describing the platform architecture : clusters (CPU power,
+ \item hostfile: hosts description file.
+ \item platform: file describing the platform architecture: clusters (CPU power,
\dots{}), intra cluster network description, inter cluster network (bandwidth bw,
latency lat, \dots{}).
- \item archi : Grid computational description (Number of clusters, Number of
+ \item archi : grid computational description (number of clusters, number of
nodes/processors for each cluster).
\end{itemize}
-
-
+\noindent
In addition, the following arguments are given to the programs at runtime:
\begin{itemize}
- \item Maximum number of inner and outer iterations;
- \item Inner and outer precisions;
- \item Matrix size (N$_{x}$, N$_{y}$ and N$_{z}$);
- \item Matrix diagonal value = 6.0;
- \item Execution Mode: synchronous or asynchronous.
+ \item maximum number of inner and outer iterations;
+ \item inner and outer precisions;
+ \item maximum number of the gmres's restarts in the Arnorldi process;
+ \item maximum number of iterations qnd the tolerance threshold in classical GMRES;
+ \item tolerance threshold for outer and inner-iterations;
+ \item matrix size (N$_{x}$, N$_{y}$ and N$_{z}$) respectively on x, y, z axis;
+ \item matrix diagonal value = 6.0 for synchronous Krylov multisplitting experiments and 6.2 for asynchronous block Jacobi experiments; \RC{CE tu vérifies, je dis ca de tête}
+ \item matrix off-diagonal value;
+ \item execution mode: synchronous or asynchronous;
+ \RCE {C'est ok la liste des arguments du programme mais si Lilia ou toi pouvez preciser pour les arguments pour CGLS ci dessous}
+ \item Size of matrix S;
+ \item Maximum number of iterations and tolerance threshold for CGLS.
\end{itemize}
-At last, note that the two solver algorithms have been executed with the Simgrid selector -cfg=smpi/running\_power which determine the computational power (here 19GFlops) of the simulator host machine.
+It should also be noticed that both solvers have been executed with the Simgrid selector -cfg=smpi/running\_power which determines the computational power (here 19GFlops) of the simulator host machine.
%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%
\section{Experimental Results}
\label{sec:expe}
+In this section, experiments for both Multisplitting algorithms are reported. First the problem used in our experiments is described.
+
+We use our two-stage algorithms to solve the well-known Poisson problem $\nabla^2\phi=f$~\cite{Polyanin01}. In three-dimensional Cartesian coordinates in $\mathbb{R}^3$, the problem takes the following form
+\begin{equation}
+\frac{\partial^2}{\partial x^2}\phi(x,y,z)+\frac{\partial^2}{\partial y^2}\phi(x,y,z)+\frac{\partial^2}{\partial z^2}\phi(x,y,z)=f(x,y,z)\mbox{~in the domain~}\Omega
+\label{eq:07}
+\end{equation}
+such that
+\begin{equation*}
+\phi(x,y,z)=0\mbox{~on the boundary~}\partial\Omega
+\end{equation*}
+where the real-valued function $\phi(x,y,z)$ is the solution sought, $f(x,y,z)$ is a known function and $\Omega=[0,1]^3$. The 3D discretization of the Laplace operator $\nabla^2$ with the finite difference scheme includes 7 points stencil on the computational grid. The numerical approximation of the Poisson problem on three-dimensional grid is repeatedly computed as $\phi=\phi^\star$ such that
+\begin{equation}
+\begin{array}{ll}
+\phi^\star(x,y,z)= & \frac{1}{6}(\phi(x-h,y,z)+\phi(x+h,y,z) \\
+ & +\phi(x,y-h,z)+\phi(x,y+h,z) \\
+ & +\phi(x,y,z-h)+\phi(x,y,z+h)\\
+ & -h^2f(x,y,z))
+\end{array}
+\label{eq:08}
+\end{equation}
+until convergence where $h$ is the grid spacing between two adjacent elements in the 3D computational grid.
+
+In the parallel context, the 3D Poisson problem is partitioned into $L\times p$ sub-problems such that $L$ is the number of clusters and $p$ is the number of processors in each cluster. We apply the three-dimensional partitioning instead of the row-by-row one in order to reduce the size of the data shared at the sub-problems boundaries. In this case, each processor is in charge of parallelepipedic sub-problem and has at most six neighbors in the same cluster or in distant clusters with which it shares data at boundaries.
-\subsection{Setup study and Methodology}
+\subsection{Study setup and Simulation Methodology}
-To conduct our study, we have put in place the following methodology
-which can be reused for any grid-enabled applications.
+First, to conduct our study, we propose the following methodology
+which can be reused for any grid-enabled applications.\\
-\textbf{Step 1} : Choose with the end users the class of algorithms or
+\textbf{Step 1}: Choose with the end users the class of algorithms or
the application to be tested. Numerical parallel iterative algorithms
have been chosen for the study in this paper. \\
-\textbf{Step 2} : Collect the software materials needed for the
+\textbf{Step 2}: Collect the software materials needed for the
experimentation. In our case, we have two variants algorithms for the
-resolution of three 3D-Poisson problem: (1) using the classical GMRES (Algo-1)(2) and the multisplitting method (Algo-2). In addition, SIMGRID simulator has been chosen to simulate the behaviors of the
-distributed applications. SIMGRID is running on the Mesocentre datacenter in Franche-Comte University but also in a virtual machine on a laptop. \\
+resolution of the 3D-Poisson problem: (1) using the classical GMRES; (2) and the Multisplitting method. In addition, the Simgrid simulator has been chosen to simulate the behaviors of the
+distributed applications. Simgrid is running on the Mesocentre datacenter in the University of Franche-Comte and also in a virtual machine on a simple laptop. \\
-\textbf{Step 3} : Fix the criteria which will be used for the future
+\textbf{Step 3}: Fix the criteria which will be used for the future
results comparison and analysis. In the scope of this study, we retain
-in one hand the algorithm execution mode (synchronous and asynchronous)
-and in the other hand the execution time and the number of iterations of
-the application before obtaining the convergence. \\
-
-\textbf{Step 4 }: Setup up the different grid testbeds environment
-which will be simulated in the simulator tool to run the program. The
-following architecture has been configured in Simgrid : 2x16 - that is a
-grid containing 2 clusters with 16 hosts (processors/cores) each -, 4x8,
-4x16, 8x8 and 2x50. The network has been designed to operate with a
-bandwidth equals to 10Gbits (resp. 1Gbits/s) and a latency of 8E-6
-microseconds (resp. 5E-5) for the intra-clusters links (resp.
-inter-clusters backbone links). \\
+on the one hand the algorithm execution mode (synchronous and asynchronous)
+and on the other hand the execution time and the number of iterations to reach the convergence. \\
+
+\textbf{Step 4 }: Set up the different grid testbed environments that will be
+simulated in the simulator tool to run the program. The following architecture
+has been configured in Simgrid : 2x16, 4x8, 4x16, 8x8 and 2x50. The first number
+represents the number of clusters in the grid and the second number represents
+the number of hosts (processors/cores) in each cluster. The network has been
+designed to operate with a bandwidth equals to 10Gbits (resp. 1Gbits/s) and a
+latency of 8.10$^{-6}$ seconds (resp. 5.10$^{-5}$) for the intra-clusters links
+(resp. inter-clusters backbone links). \\
\textbf{Step 5}: Conduct an extensive and comprehensive testings
-within these configurations in varying the key parameters, especially
+within these configurations by varying the key parameters, especially
the CPU power capacity, the network parameters and also the size of the
-input matrix. Note that some parameters should be fixed to be invariant to allow the
-comparison like some program input arguments. \\
+input data. \\
\textbf{Step 6} : Collect and analyze the output results.
\subsection{Factors impacting distributed applications performance in
a grid environment}
-From our previous experience on running distributed application in a
-computational grid, many factors are identified to have an impact on the
-program behavior and performance on this specific environment. Mainly,
-first of all, the architecture of the grid itself can obviously
-influence the performance results of the program. The performance gain
-might be important theoretically when the number of clusters and/or the
-number of nodes (processors/cores) in each individual cluster increase.
-
-Another important factor impacting the overall performance of the
-application is the network configuration. Two main network parameters
-can modify drastically the program output results : (i) the network
-bandwidth (bw=bits/s) also known as "the data-carrying capacity"
-of the network is defined as the maximum of data that can pass
-from one point to another in a unit of time. (ii) the network latency
-(lat : microsecond) defined as the delay from the start time to send the
-data from a source and the final time the destination have finished to
-receive it. Upon the network characteristics, another impacting factor
-is the application dependent volume of data exchanged between the nodes
-in the cluster and between distant clusters. Large volume of data can be
-transferred in transit between the clusters and nodes during the code
-execution.
-
- In a grid environment, it is common to distinguish in one hand, the
-"\,intra-network" which refers to the links between nodes within a
-cluster and in the other hand, the "\,inter-network" which is the
-backbone link between clusters. By design, these two networks perform
-with different speed. The intra-network generally works like a high
-speed local network with a high bandwith and very low latency. In
-opposite, the inter-network connects clusters sometime via heterogeneous
-networks components thru internet with a lower speed. The network
-between distant clusters might be a bottleneck for the global
-performance of the application.
+When running a distributed application in a computational grid, many factors may
+have a strong impact on the performances. First of all, the architecture of the
+grid itself can obviously influence the performance results of the program. The
+performance gain might be important theoretically when the number of clusters
+and/or the number of nodes (processors/cores) in each individual cluster
+increase.
+
+Another important factor impacting the overall performances of the application
+is the network configuration. Two main network parameters can modify drastically
+the program output results:
+\begin{enumerate}
+\item the network bandwidth (bw=bits/s) also known as "the data-carrying
+ capacity" of the network is defined as the maximum of data that can transit
+ from one point to another in a unit of time.
+\item the network latency (lat : microsecond) defined as the delay from the
+ start time to send the data from a source and the final time the destination
+ have finished to receive it.
+\end{enumerate}
+Upon the network characteristics, another impacting factor is the
+application dependent volume of data exchanged between the nodes in the cluster
+and between distant clusters. Large volume of data can be transferred and
+transit between the clusters and nodes during the code execution.
+
+ In a grid environment, it is common to distinguish, on the one hand, the
+ "intra-network" which refers to the links between nodes within a cluster and,
+ on the other hand, the "inter-network" which is the backbone link between
+ clusters. In practice, these two networks have different speeds. The
+ intra-network generally works like a high speed local network with a high
+ bandwith and very low latency. In opposite, the inter-network connects clusters
+ sometime via heterogeneous networks components throuth internet with a lower
+ speed. The network between distant clusters might be a bottleneck for the
+ global performance of the application.
\subsection{Comparing GMRES and Multisplitting algorithms in
synchronous mode}
In the scope of this paper, our first objective is to demonstrate the
Algo-2 (Multisplitting method) shows a better performance in grid
architecture compared with Algo-1 (Classical GMRES) both running in
-\textbf{\textit{synchronous mode}}. Better algorithm performance
+\textit{synchronous mode}. Better algorithm performance
should means a less number of iterations output and a less execution time
before reaching the convergence. For a systematic study, the experiments
should figure out that, for various grid parameters values, the
\textit{3.a Executing the algorithms on various computational grid
-architecture scaling up the input matrix size}
+architecture and scaling up the input matrix size}
\\
% environment
%\RCE{J'ai voulu mettre les tableaux des données mais je pense que c'est inutile et ça va surcharger}
-The results in figure 3 show the non-variation of the number of
-iterations of classical GMRES for a given input matrix size; it is not
+In this section, we compare the algorithms performance running on various grid configuration (2x16, 4x8, 4x16 and 8x8). First, the results in figure 3 show for all grid configuration the non-variation of the number of iterations of classical GMRES for a given input matrix size; it is not
the case for the multisplitting method.
%\begin{wrapfigure}{l}{100mm}
\end{figure}
%\end{wrapfigure}
-Unless the 8x8 cluster, the time
-execution difference between the two algorithms is important when
+The execution time difference between the two algorithms is important when
comparing between different grid architectures, even with the same number of
processors (like 2x16 and 4x8 = 32 processors for example). The
experiment concludes the low sensitivity of the multisplitting method
-(compared with the classical GMRES) when scaling up to higher input
-matrix size.
+(compared with the classical GMRES) when scaling up the number of the processors in the grid: in average, the GMRES (resp. Multisplitting) algorithm performs 40\% better (resp. 48\%) less when running from 2x16=32 to 8x8=64 processors.
-\textit{\\3.b Running on various computational grid architecture\\}
+\textit{\\3.b Running on two different speed cluster inter-networks\\}
% environment
\begin{footnotesize}
%\end{wrapfigure}
The experiments compare the behavior of the algorithms running first on
-a speed inter- cluster network (N1) and a less performant network (N2).
+a speed inter- cluster network (N1) and also on a less performant network (N2).
Figure 4 shows that end users will gain to reduce the execution time
for both algorithms in using a grid architecture like 4x16 or 8x8: the
performance was increased in a factor of 2. The results depict also that
-when the network speed drops down, the difference between the execution
+when the network speed drops down (12.5\%), the difference between the execution
times can reach more than 25\%.
\textit{\\3.c Network latency impacts on performance\\}
-The results of increasing the network bandwidth depict the improvement
-of the performance by reducing the execution time for both of the two
-algorithms (Figure 6). However, and again in this case, the multisplitting method
-presents a better performance in the considered bandwidth interval with
-a gain of 40\% which is only around 24\% for classical GMRES.
+The results of increasing the network bandwidth show the improvement
+of the performance for both of the two algorithms by reducing the execution time (Figure 6). However, and again in this case, the multisplitting method presents a better performance in the considered bandwidth interval with a gain of 40\% which is only around 24\% for classical GMRES.
\textit{\\3.e Input matrix size impacts on performance\\}
N$_{x}$ = N$_{y}$ = N$_{z}$ = 40 to 200 side elements that is from 40$^{3}$ = 64.000 to
200$^{3}$ = 8.000.000 points. Obviously, as shown in the figure 7,
the execution time for the two algorithms convergence increases with the
-input matrix size. But the interesting results here direct on (i) the
+iinput matrix size. But the interesting results here direct on (i) the
drastic increase (300 times) of the number of iterations needed before
the convergence for the classical GMRES algorithm when the matrix size
go beyond N$_{x}$=150; (ii) the classical GMRES execution time also almost
\begin{tabular}{r c }
\hline
Grid & 2x16\\ %\hline
- Network & N2 : bw=1Gbs - lat=5E-05 \\ %\hline
+ Network & N2 : bw=1Gbs - lat=5.10$^{-5}$ \\ %\hline
Input matrix size & N$_{x}$ = 150 x 150 x 150\\ \hline
\end{tabular}
Table 6 : CPU Power impact \\
\includegraphics[width=100mm]{cpu_power_impact_on_execution_time.pdf}
\caption{CPU Power impact on execution time}
%\label{overflow}}
-\end{figure}
+s\end{figure}
-Using the SIMGRID simulator flexibility, we have tried to determine the
+Using the Simgrid simulator flexibility, we have tried to determine the
impact on the algorithms performance in varying the CPU power of the
clusters nodes from 1 to 19 GFlops. The outputs depicted in the figure 6
confirm the performance gain, around 95\% for both of the two methods,
-after adding more powerful CPU. Note that the execution time axis in the
-figure is in logarithmic scale.
+after adding more powerful CPU.
\subsection{Comparing GMRES in native synchronous mode and
Multisplitting algorithms in asynchronous mode}
The previous paragraphs put in evidence the interests to simulate the
behavior of the application before any deployment in a real environment.
We have focused the study on analyzing the performance in varying the
-key factors impacting the results. In the same line, the study compares
-the performance of the two proposed methods in \textbf{synchronous mode
-}. In this section, with the same previous methodology, the goal is to
-demonstrate the efficiency of the multisplitting method in \textbf{
-asynchronous mode} compare with the classical GMRES staying in the
-synchronous mode.
+key factors impacting the results. The study compares
+the performance of the two proposed algorithms both in \textit{synchronous mode
+}. In this section, following the same previous methodology, the goal is to
+demonstrate the efficiency of the multisplitting method in \textit{
+asynchronous mode} compared with the classical GMRES staying in
+\textit{synchronous mode}.
Note that the interest of using the asynchronous mode for data exchange
is mainly, in opposite of the synchronous mode, the non-wait aspects of
asynchronous may theoretically reduce the overall execution time and can
improve the algorithm performance.
-As stated supra, SIMGRID simulator tool has been used to prove the
+As stated supra, Simgrid simulator tool has been used to prove the
efficiency of the multisplitting in asynchronous mode and to find the
best combination of the grid resources (CPU, Network, input matrix size,
-\ldots ) to get the highest "\,relative gain" in comparison with the
-classical GMRES time.
+\ldots ) to get the highest \textit{"relative gain"} (exec\_time$_{GMRES}$ / exec\_time$_{multisplitting}$) in comparison with the classical GMRES time.
The test conditions are summarized in the table below : \\
\begin{tabular}{r c }
\hline
Grid & 2x50 totaling 100 processors\\ %\hline
- Processors & 1 GFlops to 1.5 GFlops\\
- Intra-Network & bw=1.25 Gbits - lat=5E-05 \\ %\hline
- Inter-Network & bw=5 Mbits - lat=2E-02\\
+ Processors Power & 1 GFlops to 1.5 GFlops\\
+ Intra-Network & bw=1.25 Gbits - lat=5.10$^{-5}$ \\ %\hline
+ Inter-Network & bw=5 Mbits - lat=2.10$^{-2}$\\
Input matrix size & N$_{x}$ = From 62 to 150\\ %\hline
- Residual error precision: 10$^{-5}$ to 10$^{-9}$\\ \hline \\
+ Residual error precision & 10$^{-5}$ to 10$^{-9}$\\ \hline \\
\end{tabular}
\end{footnotesize}
CPU power and the network parameters (bandwidth and latency) in the
simulator tool with different problem size. The relative gains greater
than 1 between the two algorithms have been captured after each step of
-the test. Table I below has recorded the best grid configurations
-allowing a multiplitting method time more than 2.5 times lower than
-classical GMRES execution and convergence time. The finding thru this
-experimentation is the tolerance of the multisplitting method under a
-low speed network that we encounter usually with distant clusters thru the
-internet.
+the test. Table 7 below has recorded the best grid configurations
+allowing the multisplitting method execution time more performant 2.5 times than
+the classical GMRES execution and convergence time. The experimentation has demonstrated the relative multisplitting algorithm tolerance when using a low speed network that we encounter usually with distant clusters thru the internet.
% use the same column width for the following three tables
\newlength{\mytablew}\settowidth{\mytablew}{\footnotesize\np{E-11}}
|*{#1}{>{\centering\arraybackslash}p{\mytablew}|}}}{%
\end{tabular}}
+
\begin{table}[!t]
\centering
- \caption{Relative gain of the multisplitting algorithm compared with
-the classical GMRES}
- \label{"Table 7"}
+% \caption{Relative gain of the multisplitting algorithm compared with the classical GMRES}
+% \label{"Table 7"}
+Table 7. Relative gain of the multisplitting algorithm compared with
+the classical GMRES \\
- \begin{mytable}{6}
+ \begin{mytable}{11}
\hline
bandwidth (Mbit/s)
- & 5 & 5 & 5 & 5 & 5 \\
+ & 5 & 5 & 5 & 5 & 5 & 50 & 50 & 50 & 50 & 50 \\
\hline
latency (ms)
- & 20 & 20 & 20 & 20 & 20 \\
+ & 20 & 20 & 20 & 20 & 20 & 20 & 20 & 20 & 20 & 20 \\
\hline
power (GFlops)
- & 1 & 1 & 1 & 1.5 & 1.5 \\
+ & 1 & 1 & 1 & 1.5 & 1.5 & 1.5 & 1.5 & 1 & 1.5 & 1.5 \\
\hline
size (N)
- & 62 & 62 & 62 & 100 & 100 \\
+ & 62 & 62 & 62 & 100 & 100 & 110 & 120 & 130 & 140 & 150 \\
\hline
Precision
- & \np{E-5} & \np{E-8} & \np{E-9} & \np{E-11} & \np{E-11} \\
+ & \np{E-5} & \np{E-8} & \np{E-9} & \np{E-11} & \np{E-11} & \np{E-11} & \np{E-11} & \np{E-11} & \np{E-11} & \np{E-11}\\
\hline
Relative gain
- & 2.52 & 2.55 & 2.52 & 2.57 & 2.54 \\
- \hline
- \end{mytable}
-
- \smallskip
-
- \begin{mytable}{6}
- \hline
- bandwidth (Mbit/s)
- & 50 & 50 & 50 & 50 & 50 \\
- \hline
- latency (ms)
- & 20 & 20 & 20 & 20 & 20 \\
- \hline
- power (GFlops)
- & 1.5 & 1.5 & 1 & 1.5 & 1.5 \\
- \hline
- size (N)
- & 110 & 120 & 130 & 140 & 150 \\
- \hline
- Precision
- & \np{E-11} & \np{E-11} & \np{E-11} & \np{E-11} & \np{E-11}\\
- \hline
- Relative gain
- & 2.53 & 2.51 & 2.58 & 2.55 & 2.54 \\
+ & 2.52 & 2.55 & 2.52 & 2.57 & 2.54 & 2.53 & 2.51 & 2.58 & 2.55 & 2.54 \\
\hline
\end{mytable}
\end{table}
\section*{Acknowledgment}
-
-The authors would like to thank\dots{}
+This work is partially funded by the Labex ACTION program (contract ANR-11-LABX-01-01).
\bibliographystyle{wileyj}
