X-Git-Url: https://bilbo.iut-bm.univ-fcomte.fr/and/gitweb/rce2015.git/blobdiff_plain/a0fcf29838c2b115bdb217bc2966c244cdb09649..11c3be9a07960a703ef923ef37d0dfa94e346ba7:/paper.tex?ds=sidebyside

diff --git a/paper.tex b/paper.tex
index b7d5fef..05a0948 100644
--- a/paper.tex
+++ b/paper.tex
@@ -1,4 +1,3 @@
-%\documentclass[conference]{IEEEtran}
 \documentclass[times]{cpeauth}
 
 \usepackage{moreverb}
@@ -53,7 +52,10 @@
 \algnewcommand\algorithmicoutput{\textbf{Output:}}
 \algnewcommand\Output{\item[\algorithmicoutput]}
 
-\newcommand{\MI}{\mathit{MaxIter}}
+\newcommand{\TOLG}{\mathit{tol_{gmres}}}
+\newcommand{\MIG}{\mathit{maxit_{gmres}}}
+\newcommand{\TOLM}{\mathit{tol_{multi}}}
+\newcommand{\MIM}{\mathit{maxit_{multi}}}
 
 \usepackage{array}
 \usepackage{color, colortbl}
@@ -85,6 +87,8 @@
     Email: \email{{raphael.couturier,arnaud.giersch,david.laiymani,charles.ramamonjisoa}@univ-fcomte.fr}
 }
 
+%% Lilia Ziane Khodja: Department of Aerospace \& Mechanical Engineering\\ Non Linear Computational Mechanics\\ University of Liege\\ Liege, Belgium. Email: l.zianekhodja@ulg.ac.be
+
 \begin{abstract}
 ABSTRACT
 \end{abstract}
@@ -99,7 +103,91 @@ ABSTRACT
 
 \section{SimGrid}
 
-\section{Simulation of the multisplitting method}
+%%%%%%%%%%%%%%%%%%%%%%%%%
+%%%%%%%%%%%%%%%%%%%%%%%%%
+
+\section{Two-stage splitting methods}
+\label{sec:04}
+\subsection{Multisplitting methods for sparse linear systems}
+\label{sec:04.01}
+Let us consider the following sparse linear system of $n$ equations in $\mathbb{R}$
+\begin{equation}
+Ax=b,
+\label{eq:01}
+\end{equation}
+where $A$ is a sparse square and nonsingular matrix, $b$ is the right-hand side and $x$ is the solution of the system. The multisplitting methods solve the linear system~(\ref{eq:01}) iteratively as follows
+\begin{equation}
+x^{k+1}=\displaystyle\sum^L_{\ell=1} E_\ell M^{-1}_\ell (N_\ell x^k + b),~k=1,2,3,\ldots
+\label{eq:02}
+\end{equation}
+where a collection of $L$ triplets $(M_\ell, N_\ell, E_\ell)$ defines the multisplitting of matrix $A$~\cite{O'leary85,White86}, such that: the different splittings are defined as $A=M_\ell-N_\ell$ where $M_\ell$ are nonsingular matrices, and $\sum_\ell{E_\ell=I}$ are diagonal nonnegative weighting matrices and $I$ is the identity matrix. The iterations of the multisplitting methods can naturally be computed in parallel such that each processor or cluster of processors is responsible for solving one splitting as a linear sub-system   
+\begin{equation}
+M_\ell y_\ell = c_\ell^k,\mbox{~such that~} c_\ell^k = N_\ell x^k + b,
+\label{eq:03}
+\end{equation}
+then the weighting matrices $E_\ell$ are used to compute the solution of the global system~(\ref{eq:01})
+\begin{equation}
+x^{k+1}=\displaystyle\sum^L_{\ell=1} E_\ell y_\ell.
+\label{eq:04}
+\end{equation}
+The convergence of the multisplitting methods, based on synchronous or asynchronous iterations, is studied by many authors for example~\cite{O'leary85,bahi97,Bai99,bahi07}. %It is dependent on the condition  
+%\begin{equation}
+%\rho(\displaystyle\sum_{\ell=1}^L E_\ell M^{-1}_\ell N_\ell) < 1,
+%\label{eq:05}
+%\end{equation}
+%where $\rho$ is the spectral radius of the square matrix. 
+The multisplitting methods are convergent: 
+\begin{itemize}
+\item if $A^{-1}>0$ and the splittings of matrix $A$ are weak regular (i.e. $M^{-1}\geq 0$ and $M^{-1}N\geq 0$) when the iterations are synchronous, or
+\item if $A$ is M-matrix and its splittings are regular (i.e. $M^{-1}\geq 0$ and $N\geq 0$) when the iterations are asynchronous.
+\end{itemize}
+The solutions of the different linear sub-systems~(\ref{eq:03}) arising from the multisplitting of matrix $A$ can be either computed exactly with a direct method or approximated with an iterative method. In the latter case, the multisplitting methods are called {\it inner-outer iterative methods} or {\it two-stage multisplitting methods}. This kind of methods uses two nested iterations: the outer iteration and the inner iteration (that of the iterative method).
+
+In this paper we are focused on two-stage multisplitting methods, in their both versions synchronous and asynchronous, where the well-known iterative method GMRES ({\it Generalized Minimal RESidual})~\cite{saad86} is used as an inner iteration. Furthermore, our work in this paper is restricted to the block Jacobi splitting method. This approach of multisplitting consists in partitioning the matrix $A$ into $L$ horizontal band matrices of order $\frac{n}{L}\times n$ without overlapping (i.e. weighting matrices $E_\ell$ have only zero and one factors). In this case, the iteration of the multisplitting method presented by (\ref{eq:03}) and~(\ref{eq:04}) can be rewritten in the following form 
+\begin{equation}
+A_{\ell\ell} x_\ell^{k+1} = b_\ell - \displaystyle\sum^{L}_{\substack{m=1\\m\neq\ell}}{A_{\ell m}x^k_m},\mbox{~for~}\ell=1,\ldots,L\mbox{~and~}k=1,2,3,\ldots
+\label{eq:05}
+\end{equation}
+where $x_\ell$ are sub-vectors of the solution $x$, $b_\ell$ are the sub-vectors of the right-hand side $b$, and $A_{\ell\ell}$ and $A_{\ell m}$ are diagonal and off-diagonal blocks of matrix $A$ respectively. In each outer iteration $k$ until the convergence, each sub-system arising from the block Jacobi multisplitting
+\begin{equation}
+A_{\ell\ell} x_\ell = c_\ell,
+\label{eq:06}
+\end{equation}
+is solved iteratively using GMRES method and independently from other sub-systems by a cluster of processors. The right-hand sides $c_\ell=b_\ell-\sum_{m\neq\ell}A_{\ell m}x_m$ are computed using the shared vectors $x_m$. Algorithm~\ref{alg:01} shows the main key points of our block Jacobi two-stage method executed by a cluster of processors. In line~\ref{solve}, the linear sub-system~(\ref{eq:06}) is solved in parallel using GMRES method where $\MIG$ and $\TOLG$ are the maximum number of inner iterations and the tolerance threshold of GMRES respectively.  
+
+\begin{algorithm}[t]
+\caption{Block Jacobi two-stage multisplitting method}
+\begin{algorithmic}[1]
+  \Input $A_\ell$ (sparse matrix), $b_\ell$ (right-hand side)
+  \Output $x_\ell$ (solution vector)\vspace{0.2cm}
+  \State Set the initial guess $x^0$
+  \For {$k=1,2,3,\ldots$ until convergence}
+    \State $c_\ell=b_\ell-\sum_{m\neq\ell}A_{\ell m}x_m^{k-1}$
+    \State $x^k_\ell=Solve(A_{\ell\ell},c_\ell,x^{k-1}_\ell,\MIG,\TOLG)$\label{solve}
+    \State Send $x_\ell^k$ to neighboring clusters\label{send}
+    \State Receive $\{x_m^k\}_{m\neq\ell}$ from neighboring clusters\label{recv}
+  \EndFor
+\end{algorithmic}
+\label{alg:01}
+\end{algorithm}
+
+Multisplitting methods are more advantageous for large distributed computing platforms composed of hundreds or even thousands of processors interconnected by high latency networks. In this context, the parallel asynchronous model is preferred to the synchronous one to reduce overall execution times of the algorithms, even if it generally requires more iterations to converge. The asynchronous model allows the communications to be overlapped by computations which suppresses the idle times resulting from the synchronizations. So in asynchronous mode, our two-stage algorithm uses asynchronous outer iterations and asynchronous communications between clusters. The communications (i.e. lines~\ref{send} and~\ref{recv} in Algorithm~\ref{alg:01}) are performed by message passing using MPI non-blocking communication routines. The convergence of the asynchronous iterations is detected when all clusters have locally converged
+\begin{equation}
+k\geq\MIM\mbox{~or~}\|x_\ell^{k+1}-x_\ell^k\|_{\infty }\leq\TOLM,
+\label{eq:07}
+\end{equation}    
+where $\MIM$ is the maximum number of outer iterations and $\TOLM$ is the tolerance threshold of the two-stage algorithm. The procedure of the convergence detection is implemented as follows. All clusters are interconnected by a virtual unidirectional ring network around which a Boolean token circulates from a cluster to another.  
+
+
+
+
+
+
+
+\subsection{Simulation of two-stage methods using SimGrid framework}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%
+%%%%%%%%%%%%%%%%%%%%%%%%%
 
 \section{Experimental, Results and Comments}
 
@@ -115,8 +203,7 @@ have been chosen for the study in the paper.
 
 \textbf{Step 2} : Collect the software materials needed for the 
 experimentation. In our case, we have three variants algorithms for the 
-resolution of three 3D-Poisson problem: (1) using the classical GMRES 
-\textit{(Generalized Minimal RESidual Method)} alias Algo-1 in this 
+resolution of three 3D-Poisson problem: (1) using the classical GMRES alias Algo-1 in this 
 paper, (2) using the multisplitting method alias Algo-2 and (3) an 
 enhanced version of the multisplitting method as Algo-3. In addition, 
 SIMGRID simulator has been chosen to simulate the behaviors of the 
@@ -226,14 +313,14 @@ The results in figure 1 show the non-variation of the number of
 iterations of classical GMRES for a given input matrix size; it is not 
 the case for the multisplitting method. 
 
-%%\begin{wrapfigure}{l}{60mm}
+%\begin{wrapfigure}{l}{60mm}
 \begin{figure} [ht!]
 \centering
-\includegraphics[width=60mm]{Cluster x Nodes NX=150 and NX=170.jpg}
-\caption{Cluster x Nodes NX=150 and NX=170 \label{overflow}}
+\includegraphics[width=60mm]{cluster_x_nodes_nx_150_and_nx_170.pdf}
+\caption{Cluster x Nodes NX=150 and NX=170} 
+%\label{overflow}}
 \end{figure}
-%%\end{wrapfigure}
-
+%\end{wrapfigure}
 
 Unless the 8x8 cluster, the time 
 execution difference between the two algorithms is important when 
@@ -260,11 +347,14 @@ matrix size.
 %\RCE{idem pour tous les tableaux de donnees}
 
 
+%\begin{wrapfigure}{l}{60mm}
 \begin{figure} [ht!]
 \centering
-\includegraphics[width=60mm]{Cluster x Nodes N1 x N2.jpg}
-\caption{Cluster x Nodes N1 x N2\label{overflow}}
+\includegraphics[width=60mm]{cluster_x_nodes_n1_x_n2.pdf}
+\caption{Cluster x Nodes N1 x N2}
+%\label{overflow}}
 \end{figure}
+%\end{wrapfigure}
 
 The experiments compare the behavior of the algorithms running first on 
 speed inter- cluster network (N1) and a less performant network (N2). 
@@ -291,8 +381,9 @@ Table 3 : Network latency impact
 
 \begin{figure} [ht!]
 \centering
-\includegraphics[width=60mm]{Network latency impact on execution time.jpg}
-\caption{Network latency impact on execution time\label{overflow}}
+\includegraphics[width=60mm]{network_latency_impact_on_execution_time.pdf}
+\caption{Network latency impact on execution time}
+%\label{overflow}}
 \end{figure}
 
 
@@ -322,8 +413,9 @@ Table 4 : Network bandwidth impact
 
 \begin{figure} [ht!]
 \centering
-\includegraphics[width=60mm]{Network bandwith impact on execution time.jpg}
-\caption{Network bandwith impact on execution time\label{overflow}}
+\includegraphics[width=60mm]{network_bandwith_impact_on_execution_time.pdf}
+\caption{Network bandwith impact on execution time}
+%\label{overflow}
 \end{figure}
 
 
@@ -350,8 +442,9 @@ Table 5 : Input matrix size impact
 
 \begin{figure} [ht!]
 \centering
-\includegraphics[width=60mm]{Pb size impact on execution time.jpg}
-\caption{Pb size impact on execution time\label{overflow}}
+\includegraphics[width=60mm]{pb_size_impact_on_execution_time.pdf}
+\caption{Pb size impact on execution time}
+%\label{overflow}}
 \end{figure}
 
 In this experimentation, the input matrix size has been set from 
@@ -384,8 +477,9 @@ Table 6 : CPU Power impact
 
 \begin{figure} [ht!]
 \centering
-\includegraphics[width=60mm]{CPU Power impact on execution time.jpg}
-\caption{CPU Power impact on execution time\label{overflow}}
+\includegraphics[width=60mm]{cpu_power_impact_on_execution_time.pdf}
+\caption{CPU Power impact on execution time}
+%\label{overflow}}
 \end{figure}
 
 Using the SIMGRID simulator flexibility, we have tried to determine the 
@@ -461,27 +555,27 @@ internet.
   \centering
   \caption{Relative gain of the multisplitting algorithm compared with 
 the classical GMRES}
-  \label{tab.cluster.2x50}
+  \label{"Table 7"}
 
   \begin{mytable}{6}
     \hline
-    bw
-    & 5         & 5         & 5         & 5         & 5         & 50 \\
+    bandwidth (Mbit/s)
+    & 5         & 5         & 5         & 5         & 5 \\
     \hline
-    lat
-    & 0.02      & 0.02      & 0.02      & 0.02      & 0.02      & 0.02 \\
+    latency (ms)
+    & 20      & 20      & 20      & 20      & 20 \\
     \hline
-    power
-    & 1         & 1         & 1         & 1.5       & 1.5       & 1.5 \\
+    power (GFlops)
+    & 1         & 1         & 1         & 1.5       & 1.5 \\
     \hline
-    size
-    & 62        & 62        & 62        & 100       & 100       & 110 \\
+    size (N)
+    & 62        & 62        & 62        & 100       & 100 \\
     \hline
-    Prec/Eprec
-    & \np{E-5}  & \np{E-8}  & \np{E-9}  & \np{E-11} & \np{E-11} & \np{E-11} \\
+    Precision
+    & \np{E-5}  & \np{E-8}  & \np{E-9}  & \np{E-11} & \np{E-11} \\
     \hline
-    speedup
-    & 0.396     & 0.392     & 0.396     & 0.391     & 0.393     & 0.395 \\
+    Relative gain
+    & 2.52     & 2.55     & 2.52     & 2.57     & 2.54 \\
     \hline
   \end{mytable}
 
@@ -489,23 +583,23 @@ the classical GMRES}
 
   \begin{mytable}{6}
     \hline
-    bw
-    & 50        & 50        & 50        & 50        & 10        & 10 \\
+    bandwidth (Mbit/s)
+    & 50        & 50        & 50        & 50        & 50 \\
     \hline
-    lat
-    & 0.02      & 0.02      & 0.02      & 0.02      & 0.03      & 0.01 \\
+    latency (ms)
+    & 20      & 20      & 20      & 20      & 20 \\
     \hline
-    power
-    & 1.5       & 1.5       & 1.5       & 1.5       & 1         & 1.5 \\
+    power (GFlops)
+    & 1.5         & 1.5         & 1         & 1.5       & 1.5 \\
     \hline
-    size
-    & 120       & 130       & 140       & 150       & 171       & 171 \\
+    size (N)
+    & 110       & 120       & 130       & 140       & 150 \\
     \hline
-    Prec/Eprec
-    & \np{E-11} & \np{E-11} & \np{E-11} & \np{E-11} & \np{E-5}  & \np{E-5} \\
+    Precision
+    & \np{E-11} & \np{E-11} & \np{E-11} & \np{E-11} & \np{E-11}\\
     \hline
-    speedup
-    & 0.398     & 0.388     & 0.393     & 0.394     & 0.63      & 0.778 \\
+    Relative gain
+    & 2.53     & 2.51     & 2.58     & 2.55     & 2.54 \\
     \hline
   \end{mytable}
 \end{table}
@@ -520,12 +614,8 @@ CONCLUSION
 The authors would like to thank\dots{}
 
 
-% trigger a \newpage just before the given reference
-% number - used to balance the columns on the last page
-% adjust value as needed - may need to be readjusted if
-% the document is modified later
-\bibliographystyle{IEEEtran}
-\bibliography{hpccBib}
+\bibliographystyle{wileyj}
+\bibliography{biblio}
 
 \end{document}
 
