Define and use new command for JC's comments.

[mpi-energy.git] / IEEEtran / bare_jrnl.tex

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%% bare_jrnl.tex\r
%% V1.3\r
%% 2007/01/11\r
%% by Michael Shell\r
%% see http://www.michaelshell.org/\r
%% for current contact information.\r
%%\r
%% This is a skeleton file demonstrating the use of IEEEtran.cls\r
%% (requires IEEEtran.cls version 1.7 or later) with an IEEE journal paper.\r
%%\r
%% Support sites:\r
%% http://www.michaelshell.org/tex/ieeetran/\r
%% http://www.ctan.org/tex-archive/macros/latex/contrib/IEEEtran/\r
%% and\r
%% http://www.ieee.org/\r
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% *** Authors should verify (and, if needed, correct) their LaTeX system  ***\r
% *** with the testflow diagnostic prior to trusting their LaTeX platform ***\r
% *** with production work. IEEE's font choices can trigger bugs that do  ***\r
% *** not appear when using other class files.                            ***\r
% The testflow support page is at:\r
% http://www.michaelshell.org/tex/testflow/\r
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%%*************************************************************************\r
%% Legal Notice:\r
%% This code is offered as-is without any warranty either expressed or\r
%% implied; without even the implied warranty of MERCHANTABILITY or\r
%% FITNESS FOR A PARTICULAR PURPOSE! \r
%% User assumes all risk.\r
%% In no event shall IEEE or any contributor to this code be liable for\r
%% any damages or losses, including, but not limited to, incidental,\r
%% consequential, or any other damages, resulting from the use or misuse\r
%% of any information contained here.\r
%%\r
%% All comments are the opinions of their respective authors and are not\r
%% necessarily endorsed by the IEEE.\r
%%\r
%% This work is distributed under the LaTeX Project Public License (LPPL)\r
%% ( http://www.latex-project.org/ ) version 1.3, and may be freely used,\r
%% distributed and modified. A copy of the LPPL, version 1.3, is included\r
%% in the base LaTeX documentation of all distributions of LaTeX released\r
%% 2003/12/01 or later.\r
%% Retain all contribution notices and credits.\r
%% ** Modified files should be clearly indicated as such, including  **\r
%% ** renaming them and changing author support contact information. **\r
%%\r
%% File list of work: IEEEtran.cls, IEEEtran_HOWTO.pdf, bare_adv.tex,\r
%%                    bare_conf.tex, bare_jrnl.tex, bare_jrnl_compsoc.tex\r
%%*************************************************************************\r
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% cite.sty is already installed on most LaTeX systems. Be sure and use\r
% version 4.0 (2003-05-27) and later if using hyperref.sty. cite.sty does\r
% not currently provide for hyperlinked citations.\r
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% required if you want graphics, photos, etc. graphicx.sty is already\r
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% latex, and pdflatex in dvi mode, support graphics in encapsulated\r
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% that all non-photo figures use a vector format (.eps, .pdf, .mps) and\r
% not a bitmapped formats (.jpeg, .png). IEEE frowns on bitmapped formats\r
% which can result in "jaggedy"/blurry rendering of lines and letters as\r
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% only type 1 fonts will utilized at all point sizes. Without this option,\r
% it is possible that some math symbols, particularly those within\r
% footnotes, will be rendered in bitmap form which will result in a\r
% document that can not be IEEE Xplore compliant!\r
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% thus preventing page breaks from occurring within multiline equations. Use:\r
%\interdisplaylinepenalty=2500\r
% after loading amsmath to restore such page breaks as IEEEtran.cls normally\r
% does. amsmath.sty is already installed on most LaTeX systems. The latest\r
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% You can use the algorithmic environment in-text or within a figure\r
% environment to provide for a floating algorithm. Do NOT use the algorithm\r
% floating environment provided by algorithm.sty (by the same authors) or\r
% algorithm2e.sty (by Christophe Fiorio) as IEEE does not use dedicated\r
% algorithm float types and packages that provide these will not provide\r
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% easy to put subfigures in your figures. e.g., "Figure 1a and 1b". For IEEE\r
% work, it is a good idea to load it with the tight package option to reduce\r
% the amount of white space around the subfigures. subfigure.sty is already\r
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% replacement for subfigure.sty. However, subfig.sty requires and\r
% automatically loads Axel Sommerfeldt's caption.sty which will override\r
% IEEEtran.cls handling of captions and this will result in nonIEEE style\r
% figure/table captions. To prevent this problem, be sure and preload\r
% caption.sty with its "caption=false" package option. This is will preserve\r
% IEEEtran.cls handing of captions. Version 1.3 (2005/06/28) and later \r
% (recommended due to many improvements over 1.2) of subfig.sty supports\r
% the caption=false option directly:\r
%\usepackage[caption=false,font=footnotesize]{subfig}\r
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% http://www.ctan.org/tex-archive/macros/latex/contrib/subfig/\r
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% in the LaTeX2e kernel, the most notable of which is that in current\r
% LaTeX2e releases, the ordering of single and double column floats is not\r
% guaranteed to be preserved. Thus, an unpatched LaTeX2e can allow a\r
% single column figure to be placed prior to an earlier double column\r
% figure. The latest version and documentation can be found at:\r
% http://www.ctan.org/tex-archive/macros/latex/base/\r
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%\usepackage{stfloats}\r
% stfloats.sty was written by Sigitas Tolusis. This package gives LaTeX2e\r
% the ability to do double column floats at the bottom of the page as well\r
% as the top. (e.g., "\begin{figure*}[!b]" is not normally possible in\r
% LaTeX2e). It also provides a command:\r
%\fnbelowfloat\r
% to enable the placement of footnotes below bottom floats (the standard\r
% LaTeX2e kernel puts them above bottom floats). This is an invasive package\r
% which rewrites many portions of the LaTeX2e float routines. It may not work\r
% with other packages that modify the LaTeX2e float routines. The latest\r
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% Documentation is contained in the stfloats.sty comments as well as in the\r
% presfull.pdf file. Do not use the stfloats baselinefloat ability as IEEE\r
% does not allow \baselineskip to stretch. Authors submitting work to the\r
% IEEE should note that IEEE rarely uses double column equations and\r
% that authors should try to avoid such use. Do not be tempted to use the\r
% cuted.sty or midfloat.sty packages (also by Sigitas Tolusis) as IEEE does\r
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%\fi\r
% endfloat.sty was written by James Darrell McCauley and Jeff Goldberg.\r
% This package may be useful when used in conjunction with IEEEtran.cls'\r
% captionsoff option. Some IEEE journals/societies require that submissions\r
% have lists of figures/tables at the end of the paper and that\r
% figures/tables without any captions are placed on a page by themselves at\r
% the end of the document. If needed, the draftcls IEEEtran class option or\r
% \CLASSINPUTbaselinestretch interface can be used to increase the line\r
% spacing as well. Be sure and use the nomarkers option of endfloat to\r
% prevent endfloat from "marking" where the figures would have been placed\r
% in the text. The two hack lines of code above are a slight modification of\r
% that suggested by in the endfloat docs (section 8.3.1) to ensure that\r
% the full captions always appear in the list of figures/tables - even if\r
% the user used the short optional argument of \caption[]{}.\r
% IEEE papers do not typically make use of \caption[]'s optional argument,\r
% so this should not be an issue. A similar trick can be used to disable\r
% captions of packages such as subfig.sty that lack options to turn off\r
% the subcaptions:\r
% For subfig.sty:\r
% \let\MYorigsubfloat\subfloat\r
% \renewcommand{\subfloat}[2][\relax]{\MYorigsubfloat[]{#2}}\r
% For subfigure.sty:\r
% \let\MYorigsubfigure\subfigure\r
% \renewcommand{\subfigure}[2][\relax]{\MYorigsubfigure[]{#2}}\r
% However, the above trick will not work if both optional arguments of\r
% the \subfloat/subfig command are used. Furthermore, there needs to be a\r
% description of each subfigure *somewhere* and endfloat does not add\r
% subfigure captions to its list of figures. Thus, the best approach is to\r
% avoid the use of subfigure captions (many IEEE journals avoid them anyway)\r
% and instead reference/explain all the subfigures within the main caption.\r
% The latest version of endfloat.sty and its documentation can obtained at:\r
% http://www.ctan.org/tex-archive/macros/latex/contrib/endfloat/\r
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% The IEEEtran \ifCLASSOPTIONcaptionsoff conditional can also be used\r
% later in the document, say, to conditionally put the References on a \r
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% *** PDF, URL AND HYPERLINK PACKAGES ***\r
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% *** Do not adjust lengths that control margins, column widths, etc. ***\r
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% (Unless specifically asked to do so by the journal or conference you plan\r
% to submit to, of course. )\r
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\begin{document}\r
%\r
% paper title\r
% can use linebreaks \\ within to get better formatting as desired\r
\title{Bare Demo of IEEEtran.cls for Journals}\r
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% author names and IEEE memberships\r
% note positions of commas and nonbreaking spaces ( ~ ) LaTeX will not break\r
% a structure at a ~ so this keeps an author's name from being broken across\r
% two lines.\r
% use \thanks{} to gain access to the first footnote area\r
% a separate \thanks must be used for each paragraph as LaTeX2e's \thanks\r
% was not built to handle multiple paragraphs\r
%\r
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\author{Michael~Shell,~\IEEEmembership{Member,~IEEE,}\r
        John~Doe,~\IEEEmembership{Fellow,~OSA,}\r
        and~Jane~Doe,~\IEEEmembership{Life~Fellow,~IEEE}% <-this % stops a space\r
\thanks{M. Shell is with the Department\r
of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta,\r
GA, 30332 USA e-mail: (see http://www.michaelshell.org/contact.html).}% <-this % stops a space\r
\thanks{J. Doe and J. Doe are with Anonymous University.}% <-this % stops a space\r
\thanks{Manuscript received April 19, 2005; revised January 11, 2007.}}\r
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% note the % following the last \IEEEmembership and also \thanks - \r
% these prevent an unwanted space from occurring between the last author name\r
% and the end of the author line. i.e., if you had this:\r
% \r
% \author{....lastname \thanks{...} \thanks{...} }\r
%                     ^------------^------------^----Do not want these spaces!\r
%\r
% a space would be appended to the last name and could cause every name on that\r
% line to be shifted left slightly. This is one of those "LaTeX things". For\r
% instance, "\textbf{A} \textbf{B}" will typeset as "A B" not "AB". To get\r
% "AB" then you have to do: "\textbf{A}\textbf{B}"\r
% \thanks is no different in this regard, so shield the last } of each \thanks\r
% that ends a line with a % and do not let a space in before the next \thanks.\r
% Spaces after \IEEEmembership other than the last one are OK (and needed) as\r
% you are supposed to have spaces between the names. For what it is worth,\r
% this is a minor point as most people would not even notice if the said evil\r
% space somehow managed to creep in.\r
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% The paper headers\r
\markboth{Journal of \LaTeX\ Class Files,~Vol.~6, No.~1, January~2007}%\r
{Shell \MakeLowercase{\textit{et al.}}: Bare Demo of IEEEtran.cls for Journals}\r
% The only time the second header will appear is for the odd numbered pages\r
% after the title page when using the twoside option.\r
% \r
% *** Note that you probably will NOT want to include the author's ***\r
% *** name in the headers of peer review papers.                   ***\r
% You can use \ifCLASSOPTIONpeerreview for conditional compilation here if\r
% you desire.\r
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% If you want to put a publisher's ID mark on the page you can do it like\r
% this:\r
%\IEEEpubid{0000--0000/00\$00.00~\copyright~2007 IEEE}\r
% Remember, if you use this you must call \IEEEpubidadjcol in the second\r
% column for its text to clear the IEEEpubid mark.\r
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% use for special paper notices\r
%\IEEEspecialpapernotice{(Invited Paper)}\r
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% make the title area\r
\maketitle\r
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\begin{abstract}\r
%\boldmath\r
The abstract goes here.\r
\end{abstract}\r
% IEEEtran.cls defaults to using nonbold math in the Abstract.\r
% This preserves the distinction between vectors and scalars. However,\r
% if the journal you are submitting to favors bold math in the abstract,\r
% then you can use LaTeX's standard command \boldmath at the very start\r
% of the abstract to achieve this. Many IEEE journals frown on math\r
% in the abstract anyway.\r
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% Note that keywords are not normally used for peerreview papers.\r
\begin{IEEEkeywords}\r
IEEEtran, journal, \LaTeX, paper, template.\r
\end{IEEEkeywords}\r
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% For peer review papers, you can put extra information on the cover\r
% page as needed:\r
% \ifCLASSOPTIONpeerreview\r
% \begin{center} \bfseries EDICS Category: 3-BBND \end{center}\r
% \fi\r
%\r
% For peerreview papers, this IEEEtran command inserts a page break and\r
% creates the second title. It will be ignored for other modes.\r
\IEEEpeerreviewmaketitle\r
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\section{Introduction}\r
% The very first letter is a 2 line initial drop letter followed\r
% by the rest of the first word in caps.\r
% \r
% form to use if the first word consists of a single letter:\r
% \IEEEPARstart{A}{demo} file is ....\r
% \r
% form to use if you need the single drop letter followed by\r
% normal text (unknown if ever used by IEEE):\r
% \IEEEPARstart{A}{}demo file is ....\r
% \r
% Some journals put the first two words in caps:\r
% \IEEEPARstart{T}{his demo} file is ....\r
% \r
% Here we have the typical use of a "T" for an initial drop letter\r
% and "HIS" in caps to complete the first word.\r
\IEEEPARstart{T}{his} demo file is intended to serve as a ``starter file''\r
for IEEE journal papers produced under \LaTeX\ using\r
IEEEtran.cls version 1.7 and later.\r
% You must have at least 2 lines in the paragraph with the drop letter\r
% (should never be an issue)\r
I wish you the best of success.\r
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\hfill mds\r
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\hfill January 11, 2007\r
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\subsection{Subsection Heading Here}\r
Subsection text here.\r
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% needed in second column of first page if using \IEEEpubid\r
%\IEEEpubidadjcol\r
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\subsubsection{Subsubsection Heading Here}\r
Subsubsection text here.\r
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% An example of a floating figure using the graphicx package.\r
% Note that \label must occur AFTER (or within) \caption.\r
% For figures, \caption should occur after the \includegraphics.\r
% Note that IEEEtran v1.7 and later has special internal code that\r
% is designed to preserve the operation of \label within \caption\r
% even when the captionsoff option is in effect. However, because\r
% of issues like this, it may be the safest practice to put all your\r
% \label just after \caption rather than within \caption{}.\r
%\r
% Reminder: the "draftcls" or "draftclsnofoot", not "draft", class\r
% option should be used if it is desired that the figures are to be\r
% displayed while in draft mode.\r
%\r
%\begin{figure}[!t]\r
%\centering\r
%\includegraphics[width=2.5in]{myfigure}\r
% where an .eps filename suffix will be assumed under latex, \r
% and a .pdf suffix will be assumed for pdflatex; or what has been declared\r
% via \DeclareGraphicsExtensions.\r
%\caption{Simulation Results}\r
%\label{fig_sim}\r
%\end{figure}\r
\r
% Note that IEEE typically puts floats only at the top, even when this\r
% results in a large percentage of a column being occupied by floats.\r
\r
\r
% An example of a double column floating figure using two subfigures.\r
% (The subfig.sty package must be loaded for this to work.)\r
% The subfigure \label commands are set within each subfloat command, the\r
% \label for the overall figure must come after \caption.\r
% \hfil must be used as a separator to get equal spacing.\r
% The subfigure.sty package works much the same way, except \subfigure is\r
% used instead of \subfloat.\r
%\r
%\begin{figure*}[!t]\r
%\centerline{\subfloat[Case I]\includegraphics[width=2.5in]{subfigcase1}%\r
%\label{fig_first_case}}\r
%\hfil\r
%\subfloat[Case II]{\includegraphics[width=2.5in]{subfigcase2}%\r
%\label{fig_second_case}}}\r
%\caption{Simulation results}\r
%\label{fig_sim}\r
%\end{figure*}\r
%\r
% Note that often IEEE papers with subfigures do not employ subfigure\r
% captions (using the optional argument to \subfloat), but instead will\r
% reference/describe all of them (a), (b), etc., within the main caption.\r
\r
\r
% An example of a floating table. Note that, for IEEE style tables, the \r
% \caption command should come BEFORE the table. Table text will default to\r
% \footnotesize as IEEE normally uses this smaller font for tables.\r
% The \label must come after \caption as always.\r
%\r
%\begin{table}[!t]\r
%% increase table row spacing, adjust to taste\r
%\renewcommand{\arraystretch}{1.3}\r
% if using array.sty, it might be a good idea to tweak the value of\r
% \extrarowheight as needed to properly center the text within the cells\r
%\caption{An Example of a Table}\r
%\label{table_example}\r
%\centering\r
%% Some packages, such as MDW tools, offer better commands for making tables\r
%% than the plain LaTeX2e tabular which is used here.\r
%\begin{tabular}{|c||c|}\r
%\hline\r
%One & Two\\\r
%\hline\r
%Three & Four\\\r
%\hline\r
%\end{tabular}\r
%\end{table}\r
\r
\r
% Note that IEEE does not put floats in the very first column - or typically\r
% anywhere on the first page for that matter. Also, in-text middle ("here")\r
% positioning is not used. Most IEEE journals use top floats exclusively.\r
% Note that, LaTeX2e, unlike IEEE journals, places footnotes above bottom\r
% floats. This can be corrected via the \fnbelowfloat command of the\r
% stfloats package.\r
\r
\r
\r
\section{Conclusion}\r
The conclusion goes here.\r
\r
\r
\r
\r
\r
% if have a single appendix:\r
%\appendix[Proof of the Zonklar Equations]\r
% or\r
%\appendix  % for no appendix heading\r
% do not use \section anymore after \appendix, only \section*\r
% is possibly needed\r
\r
% use appendices with more than one appendix\r
% then use \section to start each appendix\r
% you must declare a \section before using any\r
% \subsection or using \label (\appendices by itself\r
% starts a section numbered zero.)\r
%\r
\r
\r
\appendices\r
\section{Proof of the First Zonklar Equation}\r
Appendix one text goes here.\r
\r
% you can choose not to have a title for an appendix\r
% if you want by leaving the argument blank\r
\section{}\r
Appendix two text goes here.\r
\r
\r
% use section* for acknowledgement\r
\section*{Acknowledgment}\r
\r
\r
The authors would like to thank...\r
\r
\r
% Can use something like this to put references on a page\r
% by themselves when using endfloat and the captionsoff option.\r
\ifCLASSOPTIONcaptionsoff\r
  \newpage\r
\fi\r
\r
\r
\r
% trigger a \newpage just before the given reference\r
% number - used to balance the columns on the last page\r
% adjust value as needed - may need to be readjusted if\r
% the document is modified later\r
%\IEEEtriggeratref{8}\r
% The "triggered" command can be changed if desired:\r
%\IEEEtriggercmd{\enlargethispage{-5in}}\r
\r
% references section\r
\r
% can use a bibliography generated by BibTeX as a .bbl file\r
% BibTeX documentation can be easily obtained at:\r
% http://www.ctan.org/tex-archive/biblio/bibtex/contrib/doc/\r
% The IEEEtran BibTeX style support page is at:\r
% http://www.michaelshell.org/tex/ieeetran/bibtex/\r
%\bibliographystyle{IEEEtran}\r
% argument is your BibTeX string definitions and bibliography database(s)\r
%\bibliography{IEEEabrv,../bib/paper}\r
%\r
% <OR> manually copy in the resultant .bbl file\r
% set second argument of \begin to the number of references\r
% (used to reserve space for the reference number labels box)\r
\begin{thebibliography}{1}\r
\r
\bibitem{IEEEhowto:kopka}\r
H.~Kopka and P.~W. Daly, \emph{A Guide to \LaTeX}, 3rd~ed.\hskip 1em plus\r
  0.5em minus 0.4em\relax Harlow, England: Addison-Wesley, 1999.\r
\r
\end{thebibliography}\r
\r
% biography section\r
% \r
% If you have an EPS/PDF photo (graphicx package needed) extra braces are\r
% needed around the contents of the optional argument to biography to prevent\r
% the LaTeX parser from getting confused when it sees the complicated\r
% \includegraphics command within an optional argument. (You could create\r
% your own custom macro containing the \includegraphics command to make things\r
% simpler here.)\r
%\begin{biography}[{\includegraphics[width=1in,height=1.25in,clip,keepaspectratio]{mshell}}]{Michael Shell}\r
% or if you just want to reserve a space for a photo:\r
\r
\begin{IEEEbiography}{Michael Shell}\r
Biography text here.\r
\end{IEEEbiography}\r
\r
% if you will not have a photo at all:\r
\begin{IEEEbiographynophoto}{John Doe}\r
Biography text here.\r
\end{IEEEbiographynophoto}\r
\r
% insert where needed to balance the two columns on the last page with\r
% biographies\r
%\newpage\r
\r
\begin{IEEEbiographynophoto}{Jane Doe}\r
Biography text here.\r
\end{IEEEbiographynophoto}\r
\r
% You can push biographies down or up by placing\r
% a \vfill before or after them. The appropriate\r
% use of \vfill depends on what kind of text is\r
% on the last page and whether or not the columns\r
% are being equalized.\r
\r
%\vfill\r
\r
% Can be used to pull up biographies so that the bottom of the last one\r
% is flush with the other column.\r
%\enlargethispage{-5in}\r
\r
\r
\r
% that's all folks\r
\end{document}\r
\r
\r