suite

diff --git a/mabase.bib b/mabase.bib
index bb42b6ae04050711466a00e6f4ff7a2f4081ff86..59c666667e15bf7352bd90da91e37362c5d0bf04 100644 (file)
--- a/mabase.bib
+++ b/mabase.bib
@@ -4189,5 +4189,45 @@
 @comment{jabref-meta: selector_journal:}
 
 @comment{jabref-meta: selector_keywords:Chaos;Entropie Topologique;Tip
 @comment{jabref-meta: selector_journal:}
 
 @comment{jabref-meta: selector_keywords:Chaos;Entropie Topologique;Tip

-e;}
+
+
+
+
+@InProceedings{Pang:2008:cec,
+  author =     "Wai-Man Pang and Tien-Tsin Wong and Pheng-Ann Heng",
+  title =      "Generating Massive High-Quality Random Numbers using
+                {GPU}",
+  booktitle =  "2008 IEEE World Congress on Computational
+                Intelligence",
+  year =       "2008",
+  editor =     "Jun Wang",
+  address =    "Hong Kong",
+  organization = "IEEE Computational Intelligence Society",
+  publisher =  "IEEE Press",
+
+}
+
+@Article{LEcuyerS07,
+  title =      "Test{U01}: {A} {C} library for empirical testing of
+                random number generators",
+  author =     "Pierre L'Ecuyer and Richard J. Simard",
+  journal =    "ACM Trans. Math. Softw",
+  year =       "2007",
+  number =     "4",
+  volume =     "33",
+  bibdate =    "2007-11-06",
+  bibsource =  "DBLP,
+                http://dblp.uni-trier.de/db/journals/toms/toms33.html#LEcuyerS07",
+  URL =        "http://doi.acm.org/10.1145/1268776.1268777",
+}
+
+@Article{ZRKB10,
+       author =                         {A. Zhmurov, K. Rybnikov, Y. Kholodov, and V. Barsegov},
+       title =                          {Generation of Random Numbers on Graphics Processors: Forced Indentation In Silico of the Bacteriophage HK97},
+       journal =                {J. Phys. Chem. B},
+       year =                           {2011},
+       volume =         {115},
+       number =         {18},
+       pages =                  {5278--5288},
+}

 
 

diff --git a/prng_gpu.tex b/prng_gpu.tex
index 6409fafa865bd29202d42edea0f0b31266fdf8ea..39536c619accd44ebe4ff4c130b2bcfb4a56ab2e 100644 (file)
--- a/prng_gpu.tex
+++ b/prng_gpu.tex
@@ -34,7 +34,7 @@
 
 \newcommand{\alert}[1]{\begin{color}{blue}\textit{#1}\end{color}}
 
 
 \newcommand{\alert}[1]{\begin{color}{blue}\textit{#1}\end{color}}
 

-\title{Efficient Generation of Pseudo-Random Bumbers based on Chaotic Iterations
+\title{Efficient Generation of Pseudo-Random Numbers based on Chaotic Iterations

 on GPU}
 \begin{document}
 
 on GPU}
 \begin{document}
 


@@ -50,24 +50,27 @@ Guyeux\thanks{Authors in alphabetic order}}
 \section{Introduction}
 
 Random  numbers are  used in  many scientific  applications and  simulations. On
 \section{Introduction}
 
 Random  numbers are  used in  many scientific  applications and  simulations. On

-finite state  machines, like  computers, it is  not possible to  generate random
+finite  state machines,  as computers,  it is  not possible  to  generate random

 numbers but only pseudo-random numbers. In practice, a good pseudo-random number
 generator (PRNG) needs  to verify some features to be used  by scientists. It is
 important  to  be  able  to  generate  pseudo-random  numbers  efficiently,  the
 generation  needs to  be reproducible  and a  PRNG needs  to satisfy  many usual
 statistical properties. Finally, from our point a view, it is essential to prove
 numbers but only pseudo-random numbers. In practice, a good pseudo-random number
 generator (PRNG) needs  to verify some features to be used  by scientists. It is
 important  to  be  able  to  generate  pseudo-random  numbers  efficiently,  the
 generation  needs to  be reproducible  and a  PRNG needs  to satisfy  many usual
 statistical properties. Finally, from our point a view, it is essential to prove

-that a  PRNG is chaotic.  Devaney~\cite{Devaney} proposed a  common mathematical
-formulation of chaotic dynamical systems.
+that a  PRNG is chaotic.  Devaney~\cite{Devaney} proposed  a common mathematical
+formulation  of chaotic  dynamical  systems. Concerning  the statistical  tests,
+TestU01the is  the best-known public-domain statistical testing  packages. So we
+use it for all our PRNGs, especially  the {\it BigCrush} which is based on the largest
+serie of tests.

 
 In a  previous work~\cite{bgw09:ip}  we have proposed  a new familly  of chaotic
 PRNG  based on  chaotic iterations  (IC).   In this  paper we  propose a  faster
 version which is also proven to be chaotic with the Devaney formulation.
 
 Although graphics  processing units (GPU)  was initially designed  to accelerate
 
 In a  previous work~\cite{bgw09:ip}  we have proposed  a new familly  of chaotic
 PRNG  based on  chaotic iterations  (IC).   In this  paper we  propose a  faster
 version which is also proven to be chaotic with the Devaney formulation.
 
 Although graphics  processing units (GPU)  was initially designed  to accelerate

-the manipulation  of image, they are  nowadays commonly used  in many scientific
+the manipulation of  images, they are nowadays commonly  used in many scientific

 applications. Therefore,  it is important  to be able to  generate pseudo-random
 applications. Therefore,  it is important  to be able to  generate pseudo-random

-numbers in  a GPU when a  scientific application runs in  a GPU. That  is why we
-also provie an efficient PRNG for GPU respecting based on IC.
+numbers inside a GPU when a scientific application runs in a GPU. That is why we
+also provide an efficient PRNG for GPU respecting based on IC.

 
 
 
 
 
 


@@ -76,10 +79,21 @@ Interet des itérations chaotiques pour générer des nombre alea\\
 Interet de générer des nombres alea sur GPU
 
 
 Interet de générer des nombres alea sur GPU
 
 

-\section{Related works}
+\section{Related works on GPU based PRNGs}

 
 

-In this section we review some GPU based PRNGs.
-\alert{RC, un petit state-of-the-art sur les PRNGs sur GPU ?}
+In the litterature many authors have work on defining GPU based PRNGs. We do not
+want to be exhaustive and we just give the most significant works from our point
+of view.
+
+In \cite{Pang:2008:cec},  the authors define  a PRNG based on  cellular automata
+which  does   not  require  high  precision  integer   arithmetics  nor  bitwise
+operations. There is no mention of statistical tests nor proof that this PRNG is
+chaotic. Concerning  the speed  of generation, they  can generate  about 3200000
+random numbers per seconds on a GeForce 7800 GTX GPU (which is quite old now).
+
+In \cite{ZRKB10}, the authors propose  different versions of efficient GPU PRNGs
+based on  Lagged Fibonacci,  Hybrid Taus  or Hybrid Taus.  They have  used these
+PRNGs for Langevin simulations of biomolecules fully implemented on GPU.

 
 \section{Basic Recalls}
 \label{section:BASIC RECALLS}
 
 \section{Basic Recalls}
 \label{section:BASIC RECALLS}


@@ -751,17 +765,16 @@ unsigned int CIprng() {
 
 
 In listing~\ref{algo:seqCIprng}  a sequential version of  our chaotic iterations
 
 
 In listing~\ref{algo:seqCIprng}  a sequential version of  our chaotic iterations

-based   PRNG    is   presented.   The    xor   operator   is    represented   by
-\textasciicircum.  This   function  uses  three  classical   64-bits  PRNG:  the
-\texttt{xorshift},  the   \texttt{xor128}  and  the   \texttt{xorwow}.   In  the
-following,  we call  them  xor-like  PRNGSs.  These  three  PRNGs are  presented
-in~\cite{Marsaglia2003}.  As each  xor-like PRNG used works with  64-bits and as
-our PRNG works  with 32-bits, the use of \texttt{(unsigned  int)} selects the 32
-least significant bits whereas  \texttt{(unsigned int)(t3$>>$32)} selects the 32
-most  significants bits  of the  variable \texttt{t}.   So to  produce  a random
-number realizes  6 xor operations with  6 32-bits numbers produced  by 3 64-bits
-PRNG.  This version successes the  BigCrush of the TestU01 battery [P.  L’ecuyer
-  and R. Simard. Testu01].
+based PRNG is  presented.  The xor operator is  represented by \textasciicircum.
+This  function uses  three classical  64-bits PRNG:  the  \texttt{xorshift}, the
+\texttt{xor128}  and  the  \texttt{xorwow}.   In  the following,  we  call  them
+xor-like PRNGSs.   These three PRNGs are  presented in~\cite{Marsaglia2003}.  As
+each xor-like PRNG  used works with 64-bits and as our  PRNG works with 32-bits,
+the use of \texttt{(unsigned int)} selects the 32 least significant bits whereas
+\texttt{(unsigned int)(t3$>>$32)}  selects the 32 most significants  bits of the
+variable \texttt{t}.   So to produce a  random number realizes  6 xor operations
+with 6 32-bits  numbers produced by 3 64-bits PRNG.   This version successes the
+BigCrush of the TestU01 battery~\cite{LEcuyerS07}.

 
 \section{Efficient prng based on chaotic iterations on GPU}
 
 
 \section{Efficient prng based on chaotic iterations on GPU}