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53 \algnewcommand\Output{\item[\algorithmicoutput]}
55 \newcommand{\TOLG}{\mathit{tol_{gmres}}}
56 \newcommand{\MIG}{\mathit{maxit_{gmres}}}
57 \newcommand{\TOLM}{\mathit{tol_{multi}}}
58 \newcommand{\MIM}{\mathit{maxit_{multi}}}
59 \newcommand{\TOLC}{\mathit{tol_{cgls}}}
60 \newcommand{\MIC}{\mathit{maxit_{cgls}}}
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73 \RCE{Titre a confirmer.}
74 \title{Comparative performance analysis of simulated grid-enabled numerical iterative algorithms}
75 %\itshape{\journalnamelc}\footnotemark[2]}
77 \author{ Charles Emile Ramamonjisoa and
80 Lilia Ziane Khodja and
86 Femto-ST Institute - DISC Department\\
87 Université de Franche-Comté\\
89 Email: \email{{raphael.couturier,arnaud.giersch,david.laiymani,charles.ramamonjisoa}@univ-fcomte.fr}
92 %% Lilia Ziane Khodja: Department of Aerospace \& Mechanical Engineering\\ Non Linear Computational Mechanics\\ University of Liege\\ Liege, Belgium. Email: l.zianekhodja@ulg.ac.be
95 The behavior of multicore applications is always a challenge to predict, especially with a new architecture for which no experiment has been performed. With some applications, it is difficult, if not impossible, to build accurate performance models. That is why another solution is to use a simulation tools that allows us to change many parameters of the architecture (network bandwidth, latency, number of processors) and to simulate the execution of such applications.
97 In this paper, we focus our attention on two parallel iterative algorithms: one with synchronoous iterations and another one with asynchronous iterations.
102 \keywords{Algorithm; distributed; iterative; asynchronous; simulation; simgrid; performance}
106 \section{Introduction}
108 \section{The asynchronous iteration model}
112 %%%%%%%%%%%%%%%%%%%%%%%%%
113 %%%%%%%%%%%%%%%%%%%%%%%%%
115 \section{Two-stage multisplitting methods}
117 \subsection{Synchronous and asynchronous two-stage methods for sparse linear systems}
119 In this paper we focus on two-stage multisplitting methods in their both versions synchronous and asynchronous~\cite{Frommer92,Szyld92,Bru95}. These iterative methods are based on multisplitting methods~\cite{O'leary85,White86,Alefeld97} and use two nested iterations: the outer iteration and the inner iteration. Let us consider the following sparse linear system of $n$ equations in $\mathbb{R}$
124 where $A$ is a sparse square and nonsingular matrix, $b$ is the right-hand side and $x$ is the solution of the system. Our work in this paper is restricted to the block Jacobi splitting method. This approach of multisplitting consists in partitioning the matrix $A$ into $L$ horizontal band matrices of order $\frac{n}{L}\times n$ without overlapping (i.e. sub-vectors $\{x_\ell\}_{1\leq\ell\leq L}$ are disjoint). The two-stage multisplitting methods solve the linear system~(\ref{eq:01}) iteratively as follows
126 x_\ell^{k+1} = A_{\ell\ell}^{-1}(b_\ell - \displaystyle\sum^{L}_{\substack{m=1\\m\neq\ell}}{A_{\ell m}x^k_m}),\mbox{~for~}\ell=1,\ldots,L\mbox{~and~}k=1,2,3,\ldots
129 where $x_\ell$ are sub-vectors of the solution $x$, $b_\ell$ are the sub-vectors of the right-hand side $b$, and $A_{\ell\ell}$ and $A_{\ell m}$ are diagonal and off-diagonal blocks of matrix $A$ respectively. The iterations of these methods can naturally be computed in parallel such that each processor or cluster of processors is responsible for solving one splitting as a linear sub-system
131 A_{\ell\ell} x_\ell = c_\ell,\mbox{~for~}\ell=1,\ldots,L,
134 where right-hand sides $c_\ell=b_\ell-\sum_{m\neq\ell}A_{\ell m}x_m$ are computed using the shared vectors $x_m$. In this paper, we use the well-known iterative method GMRES ({\it Generalized Minimal RESidual})~\cite{saad86} as an inner iteration to approximate the solutions of the different splittings arising from the block Jacobi multisplitting of matrix $A$. The algorithm in Figure~\ref{alg:01} shows the main key points of our block Jacobi two-stage method executed by a cluster of processors. In line~\ref{solve}, the linear sub-system~(\ref{eq:03}) is solved in parallel using GMRES method where $\MIG$ and $\TOLG$ are the maximum number of inner iterations and the tolerance threshold for GMRES respectively. The convergence of the two-stage multisplitting methods, based on synchronous or asynchronous iterations, is studied by many authors for example~\cite{Bru95,bahi07}.
137 %\begin{algorithm}[t]
138 %\caption{Block Jacobi two-stage multisplitting method}
139 \begin{algorithmic}[1]
140 \Input $A_\ell$ (sparse matrix), $b_\ell$ (right-hand side)
141 \Output $x_\ell$ (solution vector)\vspace{0.2cm}
142 \State Set the initial guess $x^0$
143 \For {$k=1,2,3,\ldots$ until convergence}
144 \State $c_\ell=b_\ell-\sum_{m\neq\ell}A_{\ell m}x_m^{k-1}$
145 \State $x^k_\ell=Solve_{gmres}(A_{\ell\ell},c_\ell,x^{k-1}_\ell,\MIG,\TOLG)$\label{solve}
146 \State Send $x_\ell^k$ to neighboring clusters\label{send}
147 \State Receive $\{x_m^k\}_{m\neq\ell}$ from neighboring clusters\label{recv}
150 \caption{Block Jacobi two-stage multisplitting method}
155 In this paper, we propose two algorithms of two-stage multisplitting methods. The first algorithm is based on asynchronous model which allows the communications to be overlapped by computations and reduces the idle times resulting from the synchronizations. So in the asynchronous mode, our two-stage algorithm uses asynchronous outer iterations and asynchronous communications between clusters. The communications (i.e. lines~\ref{send} and~\ref{recv} in Figure~\ref{alg:01}) are performed by message passing using MPI non-blocking communication routines. The convergence of the asynchronous iterations is detected when all clusters have locally converged
157 k\geq\MIM\mbox{~or~}\|x_\ell^{k+1}-x_\ell^k\|_{\infty }\leq\TOLM,
160 where $\MIM$ is the maximum number of outer iterations and $\TOLM$ is the tolerance threshold for the two-stage algorithm.
162 The second two-stage algorithm is based on synchronous outer iterations. We propose to use the Krylov iteration based on residual minimization to improve the slow convergence of the multisplitting methods. In this case, a $n\times s$ matrix $S$ is set using solutions issued from the inner iteration
164 S=[x^1,x^2,\ldots,x^s],~s\ll n.
167 At each $s$ outer iterations, the algorithm computes a new approximation $\tilde{x}=S\alpha$ which minimizes the residual
169 \min_{\alpha\in\mathbb{R}^s}{\|b-AS\alpha\|_2}.
172 The algorithm in Figure~\ref{alg:02} includes the procedure of the residual minimization and the outer iteration is restarted with a new approximation $\tilde{x}$ at every $s$ iterations. The least-squares problem~(\ref{eq:06}) is solved in parallel by all clusters using CGLS method~\cite{Hestenes52} such that $\MIC$ is the maximum number of iterations and $\TOLC$ is the tolerance threshold for this method (line~\ref{cgls} in Figure~\ref{alg:02}).
175 %\begin{algorithm}[t]
176 %\caption{Krylov two-stage method using block Jacobi multisplitting}
177 \begin{algorithmic}[1]
178 \Input $A_\ell$ (sparse matrix), $b_\ell$ (right-hand side)
179 \Output $x_\ell$ (solution vector)\vspace{0.2cm}
180 \State Set the initial guess $x^0$
181 \For {$k=1,2,3,\ldots$ until convergence}
182 \State $c_\ell=b_\ell-\sum_{m\neq\ell}A_{\ell m}x_m^{k-1}$
183 \State $x^k_\ell=Solve_{gmres}(A_{\ell\ell},c_\ell,x^{k-1}_\ell,\MIG,\TOLG)$
184 \State $S_{\ell,k\mod s}=x_\ell^k$
186 \State $\alpha = Solve_{cgls}(AS,b,\MIC,\TOLC)$\label{cgls}
187 \State $\tilde{x_\ell}=S_\ell\alpha$
188 \State Send $\tilde{x_\ell}$ to neighboring clusters
190 \State Send $x_\ell^k$ to neighboring clusters
192 \State Receive $\{x_m^k\}_{m\neq\ell}$ from neighboring clusters
195 \caption{Krylov two-stage method using block Jacobi multisplitting}
200 \subsection{Simulation of two-stage methods using SimGrid framework}
203 One of our objectives when simulating the application in SIMGRID is, as in real life, to get accurate results (solutions of the problem) but also ensure the test reproducibility under the same conditions.According our experience, very few modifications are required to adapt a MPI program to run in SIMGRID simulator using SMPI (Simulator MPI).The first modification is to include SMPI libraries and related header files (smpi.h). The second and important modification is to eliminate all global variables in moving them to local subroutine or using a Simgrid selector called "runtime automatic switching" (smpi/privatize\_global\_variables). Indeed, global variables can generate side effects on runtime between the threads running in the same process, generated by the Simgrid to simulate the grid environment.The last modification on the MPI program pointed out for some cases, the review of the sequence of the MPI\_Isend, MPI\_Irecv and MPI\_Waitall instructions which might cause an infinite loop.
206 \paragraph{SIMGRID Simulator parameters}
209 \item HOSTFILE: Hosts description file.
210 \item PLATFORM: File describing the platform architecture : clusters (CPU power,
211 \dots{}), intra cluster network description, inter cluster network (bandwidth bw,
212 lat latency, \dots{}).
213 \item ARCHI : Grid computational description (Number of clusters, Number of
214 nodes/processors for each cluster).
218 In addition, the following arguments are given to the programs at runtime:
221 \item Maximum number of inner and outer iterations;
222 \item Inner and outer precisions;
223 \item Matrix size (NX, NY and NZ);
224 \item Matrix diagonal value = 6.0;
225 \item Execution Mode: synchronous or asynchronous.
228 At last, note that the two solver algorithms have been executed with the Simgrid selector --cfg=smpi/running\_power which determine the computational power (here 19GFlops) of the simulator host machine.
230 %%%%%%%%%%%%%%%%%%%%%%%%%
231 %%%%%%%%%%%%%%%%%%%%%%%%%
233 \section{Experimental, Results and Comments}
236 \subsection{Setup study and Methodology}
238 To conduct our study, we have put in place the following methodology
239 which can be reused with any grid-enabled applications.
241 \textbf{Step 1} : Choose with the end users the class of algorithms or
242 the application to be tested. Numerical parallel iterative algorithms
243 have been chosen for the study in the paper.
245 \textbf{Step 2} : Collect the software materials needed for the
246 experimentation. In our case, we have three variants algorithms for the
247 resolution of three 3D-Poisson problem: (1) using the classical GMRES alias Algo-1 in this
248 paper, (2) using the multisplitting method alias Algo-2 and (3) an
249 enhanced version of the multisplitting method as Algo-3. In addition,
250 SIMGRID simulator has been chosen to simulate the behaviors of the
251 distributed applications. SIMGRID is running on the Mesocentre
252 datacenter in Franche-Comte University but also in a virtual
255 \textbf{Step 3} : Fix the criteria which will be used for the future
256 results comparison and analysis. In the scope of this study, we retain
257 in one hand the algorithm execution mode (synchronous and asynchronous)
258 and in the other hand the execution time and the number of iterations of
259 the application before obtaining the convergence.
261 \textbf{Step 4 }: Setup up the different grid testbeds environment
262 which will be simulated in the simulator tool to run the program. The
263 following architecture has been configured in Simgrid : 2x16 - that is a
264 grid containing 2 clusters with 16 hosts (processors/cores) each -, 4x8,
265 4x16, 8x8 and 2x50. The network has been designed to operate with a
266 bandwidth equals to 10Gbits (resp. 1Gbits/s) and a latency of 8E-6
267 microseconds (resp. 5E-5) for the intra-clusters links (resp.
268 inter-clusters backbone links).
270 \textbf{Step 5}: Process an extensive and comprehensive testings
271 within these configurations in varying the key parameters, especially
272 the CPU power capacity, the network parameters and also the size of the
273 input matrix. Note that some parameters should be invariant to allow the
274 comparison like some program input arguments.
276 {Step 6} : Collect and analyze the output results.
278 \subsection{Factors impacting distributed applications performance in
281 From our previous experience on running distributed application in a
282 computational grid, many factors are identified to have an impact on the
283 program behavior and performance on this specific environment. Mainly,
284 first of all, the architecture of the grid itself can obviously
285 influence the performance results of the program. The performance gain
286 might be important theoretically when the number of clusters and/or the
287 number of nodes (processors/cores) in each individual cluster increase.
289 Another important factor impacting the overall performance of the
290 application is the network configuration. Two main network parameters
291 can modify drastically the program output results : (i) the network
292 bandwidth (bw=bits/s) also known as "the data-carrying capacity"
293 of the network is defined as the maximum of data that can pass
294 from one point to another in a unit of time. (ii) the network latency
295 (lat : microsecond) defined as the delay from the start time to send the
296 data from a source and the final time the destination have finished to
297 receive it. Upon the network characteristics, another impacting factor
298 is the application dependent volume of data exchanged between the nodes
299 in the cluster and between distant clusters. Large volume of data can be
300 transferred in transit between the clusters and nodes during the code
303 In a grid environment, it is common to distinguish in one hand, the
304 "\,intra-network" which refers to the links between nodes within a
305 cluster and in the other hand, the "\,inter-network" which is the
306 backbone link between clusters. By design, these two networks perform
307 with different speed. The intra-network generally works like a high
308 speed local network with a high bandwith and very low latency. In
309 opposite, the inter-network connects clusters sometime via heterogeneous
310 networks components thru internet with a lower speed. The network
311 between distant clusters might be a bottleneck for the global
312 performance of the application.
314 \subsection{Comparing GMRES and Multisplitting algorithms in
317 In the scope of this paper, our first objective is to demonstrate the
318 Algo-2 (Multisplitting method) shows a better performance in grid
319 architecture compared with Algo-1 (Classical GMRES) both running in
320 \textbf{\textit{synchronous mode}}. Better algorithm performance
321 should mean a less number of iterations output and a less execution time
322 before reaching the convergence. For a systematic study, the experiments
323 should figure out that, for various grid parameters values, the
324 simulator will confirm the targeted outcomes, particularly for poor and
325 slow networks, focusing on the impact on the communication performance
326 on the chosen class of algorithm.
328 The following paragraphs present the test conditions, the output results
332 \textit{3.a Executing the algorithms on various computational grid
333 architecture scaling up the input matrix size}
338 \begin{tabular}{r c }
340 Grid & 2x16, 4x8, 4x16 and 8x8\\ %\hline
341 Network & N2 : bw=1Gbs-lat=5E-05 \\ %\hline
342 Input matrix size & N$_{x}$ =150 x 150 x 150 and\\ %\hline
343 - & N$_{x}$ =170 x 170 x 170 \\ \hline
345 Table 1 : Clusters x Nodes with NX=150 or NX=170 \\
351 %\RCE{J'ai voulu mettre les tableaux des données mais je pense que c'est inutile et ça va surcharger}
354 The results in figure 1 show the non-variation of the number of
355 iterations of classical GMRES for a given input matrix size; it is not
356 the case for the multisplitting method.
358 %\begin{wrapfigure}{l}{100mm}
361 \includegraphics[width=100mm]{cluster_x_nodes_nx_150_and_nx_170.pdf}
362 \caption{Cluster x Nodes NX=150 and NX=170}
367 Unless the 8x8 cluster, the time
368 execution difference between the two algorithms is important when
369 comparing between different grid architectures, even with the same number of
370 processors (like 2x16 and 4x8 = 32 processors for example). The
371 experiment concludes the low sensitivity of the multisplitting method
372 (compared with the classical GMRES) when scaling up to higher input
375 \textit{\\3.b Running on various computational grid architecture\\}
379 \begin{tabular}{r c }
381 Grid & 2x16, 4x8\\ %\hline
382 Network & N1 : bw=10Gbs-lat=8E-06 \\ %\hline
383 - & N2 : bw=1Gbs-lat=5E-05 \\
384 Input matrix size & N$_{x}$ =150 x 150 x 150\\ \hline \\
386 Table 2 : Clusters x Nodes - Networks N1 x N2 \\
392 %\begin{wrapfigure}{l}{100mm}
395 \includegraphics[width=100mm]{cluster_x_nodes_n1_x_n2.pdf}
396 \caption{Cluster x Nodes N1 x N2}
401 The experiments compare the behavior of the algorithms running first on
402 speed inter- cluster network (N1) and a less performant network (N2).
403 The figure 2 shows that end users will gain to reduce the execution time
404 for both algorithms in using a grid architecture like 4x16 or 8x8: the
405 performance was increased in a factor of 2. The results depict also that
406 when the network speed drops down, the difference between the execution
407 times can reach more than 25\%.
409 \textit{\\3.c Network latency impacts on performance\\}
413 \begin{tabular}{r c }
415 Grid & 2x16\\ %\hline
416 Network & N1 : bw=1Gbs \\ %\hline
417 Input matrix size & N$_{x}$ =150 x 150 x 150\\ \hline\\
420 Table 3 : Network latency impact \\
428 \includegraphics[width=100mm]{network_latency_impact_on_execution_time.pdf}
429 \caption{Network latency impact on execution time}
434 According the results in table and figure 3, degradation of the network
435 latency from 8.10$^{-6}$ to 6.10$^{-5}$ implies an absolute time
436 increase more than 75\% (resp. 82\%) of the execution for the classical
437 GMRES (resp. multisplitting) algorithm. In addition, it appears that the
438 multisplitting method tolerates more the network latency variation with
439 a less rate increase. Consequently, in the worst case (lat=6.10$^{-5
440 }$), the execution time for GMRES is almost the double of the time for
441 the multisplitting, even though, the performance was on the same order
442 of magnitude with a latency of 8.10$^{-6}$.
444 \textit{\\3.d Network bandwidth impacts on performance\\}
448 \begin{tabular}{r c }
450 Grid & 2x16\\ %\hline
451 Network & N1 : bw=1Gbs - lat=5E-05 \\ %\hline
452 Input matrix size & N$_{x}$ =150 x 150 x 150\\ \hline
455 Table 4 : Network bandwidth impact \\
462 \includegraphics[width=100mm]{network_bandwith_impact_on_execution_time.pdf}
463 \caption{Network bandwith impact on execution time}
469 The results of increasing the network bandwidth depict the improvement
470 of the performance by reducing the execution time for both of the two
471 algorithms. However, and again in this case, the multisplitting method
472 presents a better performance in the considered bandwidth interval with
473 a gain of 40\% which is only around 24\% for classical GMRES.
475 \textit{\\3.e Input matrix size impacts on performance\\}
479 \begin{tabular}{r c }
482 Network & N2 : bw=1Gbs - lat=5E-05 \\ %\hline
483 Input matrix size & N$_{x}$ = From 40 to 200\\ \hline
485 Table 5 : Input matrix size impact\\
492 \includegraphics[width=100mm]{pb_size_impact_on_execution_time.pdf}
493 \caption{Pb size impact on execution time}
497 In this experimentation, the input matrix size has been set from
498 Nx=Ny=Nz=40 to 200 side elements that is from 40$^{3}$ = 64.000 to
499 200$^{3}$ = 8.000.000 points. Obviously, as shown in the figure 5,
500 the execution time for the algorithms convergence increases with the
501 input matrix size. But the interesting result here direct on (i) the
502 drastic increase (300 times) of the number of iterations needed before
503 the convergence for the classical GMRES algorithm when the matrix size
504 go beyond Nx=150; (ii) the classical GMRES execution time also almost
505 the double from Nx=140 compared with the convergence time of the
506 multisplitting method. These findings may help a lot end users to setup
507 the best and the optimal targeted environment for the application
508 deployment when focusing on the problem size scale up. Note that the
509 same test has been done with the grid 2x16 getting the same conclusion.
511 \textit{\\3.f CPU Power impact on performance\\}
515 \begin{tabular}{r c }
517 Grid & 2x16\\ %\hline
518 Network & N2 : bw=1Gbs - lat=5E-05 \\ %\hline
519 Input matrix size & N$_{x}$ = 150 x 150 x 150\\ \hline
521 Table 6 : CPU Power impact \\
528 \includegraphics[width=100mm]{cpu_power_impact_on_execution_time.pdf}
529 \caption{CPU Power impact on execution time}
533 Using the SIMGRID simulator flexibility, we have tried to determine the
534 impact on the algorithms performance in varying the CPU power of the
535 clusters nodes from 1 to 19 GFlops. The outputs depicted in the figure 6
536 confirm the performance gain, around 95\% for both of the two methods,
537 after adding more powerful CPU. Note that the execution time axis in the
538 figure is in logarithmic scale.
540 \subsection{Comparing GMRES in native synchronous mode and
541 Multisplitting algorithms in asynchronous mode}
543 The previous paragraphs put in evidence the interests to simulate the
544 behavior of the application before any deployment in a real environment.
545 We have focused the study on analyzing the performance in varying the
546 key factors impacting the results. In the same line, the study compares
547 the performance of the two proposed methods in \textbf{synchronous mode
548 }. In this section, with the same previous methodology, the goal is to
549 demonstrate the efficiency of the multisplitting method in \textbf{
550 asynchronous mode} compare with the classical GMRES staying in the
553 Note that the interest of using the asynchronous mode for data exchange
554 is mainly, in opposite of the synchronous mode, the non-wait aspects of
555 the current computation after a communication operation like sending
556 some data between nodes. Each processor can continue their local
557 calculation without waiting for the end of the communication. Thus, the
558 asynchronous may theoretically reduce the overall execution time and can
559 improve the algorithm performance.
561 As stated supra, SIMGRID simulator tool has been used to prove the
562 efficiency of the multisplitting in asynchronous mode and to find the
563 best combination of the grid resources (CPU, Network, input matrix size,
564 \ldots ) to get the highest "\,relative gain" in comparison with the
565 classical GMRES time.
568 The test conditions are summarized in the table below : \\
572 \begin{tabular}{r c }
574 Grid & 2x50 totaling 100 processors\\ %\hline
575 Processors & 1 GFlops to 1.5 GFlops\\
576 Intra-Network & bw=1.25 Gbits - lat=5E-05 \\ %\hline
577 Inter-Network & bw=5 Mbits - lat=2E-02\\
578 Input matrix size & N$_{x}$ = From 62 to 150\\ %\hline
579 Residual error precision: 10$^{-5}$ to 10$^{-9}$\\ \hline \\
583 Again, comprehensive and extensive tests have been conducted varying the
584 CPU power and the network parameters (bandwidth and latency) in the
585 simulator tool with different problem size. The relative gains greater
586 than 1 between the two algorithms have been captured after each step of
587 the test. Table I below has recorded the best grid configurations
588 allowing a multiplitting method time more than 2.5 times lower than
589 classical GMRES execution and convergence time. The finding thru this
590 experimentation is the tolerance of the multisplitting method under a
591 low speed network that we encounter usually with distant clusters thru the
594 % use the same column width for the following three tables
595 \newlength{\mytablew}\settowidth{\mytablew}{\footnotesize\np{E-11}}
596 \newenvironment{mytable}[1]{% #1: number of columns for data
597 \renewcommand{\arraystretch}{1.3}%
598 \begin{tabular}{|>{\bfseries}r%
599 |*{#1}{>{\centering\arraybackslash}p{\mytablew}|}}}{%
604 \caption{Relative gain of the multisplitting algorithm compared with
611 & 5 & 5 & 5 & 5 & 5 \\
614 & 20 & 20 & 20 & 20 & 20 \\
617 & 1 & 1 & 1 & 1.5 & 1.5 \\
620 & 62 & 62 & 62 & 100 & 100 \\
623 & \np{E-5} & \np{E-8} & \np{E-9} & \np{E-11} & \np{E-11} \\
626 & 2.52 & 2.55 & 2.52 & 2.57 & 2.54 \\
635 & 50 & 50 & 50 & 50 & 50 \\
638 & 20 & 20 & 20 & 20 & 20 \\
641 & 1.5 & 1.5 & 1 & 1.5 & 1.5 \\
644 & 110 & 120 & 130 & 140 & 150 \\
647 & \np{E-11} & \np{E-11} & \np{E-11} & \np{E-11} & \np{E-11}\\
650 & 2.53 & 2.51 & 2.58 & 2.55 & 2.54 \\
659 \section*{Acknowledgment}
662 The authors would like to thank\dots{}
665 \bibliographystyle{wileyj}
666 \bibliography{biblio}
674 %%% ispell-local-dictionary: "american"